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Cow genome map

           
Conread name:
           
rche14_m4.y1
        

               
Conread position:
               
1-113
               

               
Cow position:
               
chr1:71253541-71253421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr1:52039650-52039789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 112
               

               
Conread position:
               
1-156
               

               
Cow position:
               
chr1:13637651-13637487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
33, 103
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chr1:50329507-50329679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
36, 145
               

               
Conread position:
               
1-169
               

               
Cow position:
               
chr1:43389036-43388863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
34, 110
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr1:58754782-58754605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
33, 125
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr1:62034816-62034642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 57
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr1:79003988-79004175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
35, 65
               

               
Conread position:
               
1-178
               

               
Cow position:
               
chr1:79146805-79146614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
35, 119
               

               
Conread position:
               
1-179
               

               
Cow position:
               
chr1:89448912-89449099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
35, 113
               

               
Conread position:
               
1-183
               

               
Cow position:
               
chr1:3965848-3966034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
36, 145
               

               
Conread position:
               
1-183
               

               
Cow position:
               
chr1:25383680-25383874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
35, 129
               

               
Conread position:
               
1-183
               

               
Cow position:
               
chr1:27959538-27959342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
1-183
               

               
Cow position:
               
chr1:48105419-48105219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-183
               

               
Cow position:
               
chr1:55705234-55705042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
34, 117
               

               
Conread position:
               
1-183
               

               
Cow position:
               
chr1:56618638-56618451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
32, 123
               

               
Conread position:
               
1-183
               

               
Cow position:
               
chr1:99605175-99604987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 112
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr1:261467-261255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr1:40212320-40212139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
135, 35
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr1:45575945-45576129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
31, 105
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr1:46143449-46143258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
32, 108
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr1:48618232-48618038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
37, 112
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr1:62997811-62998006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
34, 178
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr1:101439470-101439275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
32, 24
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr1:54206802-54206602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
28, 91
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr1:37321986-37321793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
35, 109
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr1:41056690-41056896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
35, 178
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr1:82537942-82538144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
34, 111
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr1:84811927-84811724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
35, 104
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:68688595-68688797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
33, 103
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:97303237-97303035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
38, 110
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:68817785-68817586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
20, 111
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:79135296-79135498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
35, 24
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:87197832-87198048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
35, 119
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr1:7965865-7966067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr1:78096939-78097146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
29, 127
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr1:78857317-78857106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr1:79630890-79630700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
169, 7
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr1:83092887-83093081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
135, 101
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr1:97755532-97755720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
135, 35
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr1:89158685-89158486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
34, 13
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr1:90621494-90621285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
35, 141
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr1:24133048-24132839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
34, 115
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr1:81290519-81290726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
33, 102
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr1:86110725-86110522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
29, 96
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr1:89381287-89381495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
33, 122
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr1:93590574-93590370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
33, 114
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr1:82936585-82936383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
28, 104
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr1:48206519-48206315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
34, 18
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr1:98912020-98912233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
33, 204
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr1:77232566-77232340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 170
               

               
Conread position:
               
2-118
               

               
Cow position:
               
chr1:84779625-84779507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 94
               

               
Conread position:
               
2-166
               

               
Cow position:
               
chr1:89158112-89157942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
34, 113
               

               
Conread position:
               
2-179
               

               
Cow position:
               
chr1:24530514-24530699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
28, 112
               

               
Conread position:
               
2-179
               

               
Cow position:
               
chr1:97833723-97833898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 99
               

               
Conread position:
               
2-186
               

               
Cow position:
               
chr1:3942202-3942008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
34, 87
               

               
Conread position:
               
2-197
               

               
Cow position:
               
chr1:85339400-85339593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
33, 108
               

               
Conread position:
               
3-113
               

               
Cow position:
               
chr1:53640729-53640847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
3-134
               

               
Cow position:
               
chr1:19962067-19962204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
32, 122
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr1:99031954-99031776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
108, 84
               

               
Conread position:
               
3-183
               

               
Cow position:
               
chr1:33080785-33080606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
99, 31
               

               
Conread position:
               
3-186
               

               
Cow position:
               
chr1:102529843-102529645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
27, 62
               

               
Conread position:
               
3-187
               

               
Cow position:
               
chr1:35671556-35671745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
32, 109
               

               
Conread position:
               
3-198
               

               
Cow position:
               
chr1:88913334-88913539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
27, 127
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr1:83222009-83222216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
32, 22
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr1:87220474-87220672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
31, 102
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr1:70483320-70483106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
27, 116
               

               
Conread position:
               
3-208
               

               
Cow position:
               
chr1:45315622-45315402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 213
               

               
Conread position:
               
3-212
               

               
Cow position:
               
chr1:29671210-29670992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
31, 167
               

               
Conread position:
               
4-183
               

               
Cow position:
               
chr1:59518937-59519116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
27, 87
               

               
Conread position:
               
5-183
               

               
Cow position:
               
chr1:41697074-41697259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
32, 96
               

               
Conread position:
               
10-187
               

               
Cow position:
               
chr1:98742047-98742225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
30, 109
               

               
Conread position:
               
13-187
               

               
Cow position:
               
chr1:3679494-3679317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
35, 63
               

               
Conread position:
               
13-187
               

               
Cow position:
               
chr1:50585841-50585667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
79, 105
               

               
Conread position:
               
13-195
               

               
Cow position:
               
chr1:61564817-61564998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
104, 23
               

               
Conread position:
               
14-183
               

               
Cow position:
               
chr1:80870418-80870586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
106, 18
               

               
Conread position:
               
16-184
               

               
Cow position:
               
chr1:69678292-69678117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
20-183
               

               
Cow position:
               
chr1:39095528-39095690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
14, 100
               

               
Conread position:
               
21-192
               

               
Cow position:
               
chr1:55357250-55357075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
79, 12
               

               
Conread position:
               
23-173
               

               
Cow position:
               
chr1:26929954-26929799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
23-198
               

               
Cow position:
               
chr1:73398031-73397849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
25-183
               

               
Cow position:
               
chr1:15102930-15103089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
25-195
               

               
Cow position:
               
chr1:1489360-1489188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
25-197
               

               
Cow position:
               
chr1:50906634-50906463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
8, 93
               

               
Conread position:
               
26-200
               

               
Cow position:
               
chr1:61741918-61741746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
76, 7
               

               
Conread position:
               
28-183
               

               
Cow position:
               
chr1:58420251-58420403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
109, 81
               

               
Conread position:
               
28-205
               

               
Cow position:
               
chr1:716538-716354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
11, 23
               

               
Conread position:
               
28-206
               

               
Cow position:
               
chr1:65160178-65160356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
80, 31
               

               
Conread position:
               
31-187
               

               
Cow position:
               
chr1:70538664-70538815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
105, 68
               

               
Conread position:
               
31-206
               

               
Cow position:
               
chr1:10942041-10941868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
57, 37
               

               
Conread position:
               
31-206
               

               
Cow position:
               
chr1:10964345-10964518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
57, 37
               

               
Conread position:
               
32-198
               

               
Cow position:
               
chr1:83246479-83246645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
79, 152
               

               
Conread position:
               
32-200
               

               
Cow position:
               
chr1:3151351-3151519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
58, 45
               

               
Conread position:
               
33-184
               

               
Cow position:
               
chr1:6790826-6790980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
34-128
               

               
Cow position:
               
chr1:89341924-89341832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
34-167
               

               
Cow position:
               
chr1:31256170-31256041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
102, 65
               

               
Conread position:
               
34-168
               

               
Cow position:
               
chr1:98030979-98031105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
102, 41
               

               
Conread position:
               
34-170
               

               
Cow position:
               
chr1:71078904-71078770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
102, 54
               

               
Conread position:
               
34-171
               

               
Cow position:
               
chr1:1799086-1799225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
58, 86
               

               
Conread position:
               
34-179
               

               
Cow position:
               
chr1:759362-759211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
34-179
               

               
Cow position:
               
chr1:28563513-28563360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
34-179
               

               
Cow position:
               
chr1:53520967-53521106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
30, 72
               

               
Conread position:
               
34-179
               

               
Cow position:
               
chr1:73721416-73721565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
39, 54
               

               
Conread position:
               
34-179
               

               
Cow position:
               
chr1:95049810-95049664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
60, 119
               

               
Conread position:
               
34-179
               

               
Cow position:
               
chr1:95618698-95618842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
100, 83
               

               
Conread position:
               
34-182
               

               
Cow position:
               
chr1:62964322-62964472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
59, 86
               

               
Conread position:
               
34-183
               

               
Cow position:
               
chr1:54156679-54156529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
53, 86
               

               
Conread position:
               
34-183
               

               
Cow position:
               
chr1:77685925-77685773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
34-184
               

               
Cow position:
               
chr1:57395451-57395299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
34-184
               

               
Cow position:
               
chr1:77739778-77739930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
75, 45
               

               
Conread position:
               
34-186
               

               
Cow position:
               
chr1:6166296-6166440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
103, 46
               

               
Conread position:
               
34-186
               

               
Cow position:
               
chr1:64302187-64302042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
102, 63
               

               
Conread position:
               
34-187
               

               
Cow position:
               
chr1:628022-628177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
75, 59
               

               
Conread position:
               
34-187
               

               
Cow position:
               
chr1:7740003-7740152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
102, 69
               

               
Conread position:
               
34-187
               

               
Cow position:
               
chr1:15333947-15334098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
102, 75
               

               
Conread position:
               
34-187
               

               
Cow position:
               
chr1:15547526-15547674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
102, 66
               

               
Conread position:
               
34-187
               

               
Cow position:
               
chr1:53474212-53474357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
103, 17
               

               
Conread position:
               
34-187
               

               
Cow position:
               
chr1:56913473-56913323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
103, 46
               

               
Conread position:
               
34-187
               

               
Cow position:
               
chr1:73551454-73551294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
18, 154
               

               
Conread position:
               
34-187
               

               
Cow position:
               
chr1:78794175-78794027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
102, 69
               

               
Conread position:
               
34-188
               

               
Cow position:
               
chr1:63530614-63530769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
59, 85
               

               
Conread position:
               
34-192
               

               
Cow position:
               
chr1:22192825-22192982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
74, 85
               

               
Conread position:
               
34-192
               

               
Cow position:
               
chr1:78811094-78811252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
61, 69
               

               
Conread position:
               
34-194
               

               
Cow position:
               
chr1:852226-852391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
34-194
               

               
Cow position:
               
chr1:6230004-6230158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
34-194
               

               
Cow position:
               
chr1:42592230-42592070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
83, 15
               

               
Conread position:
               
34-194
               

               
Cow position:
               
chr1:46245684-46245518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
70, 23
               

               
Conread position:
               
34-195
               

               
Cow position:
               
chr1:54569754-54569922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
34-195
               

               
Cow position:
               
chr1:96558793-96558629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
34-196
               

               
Cow position:
               
chr1:97321998-97321827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
34-197
               

               
Cow position:
               
chr1:3034143-3033989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
103, 48
               

               
Conread position:
               
34-197
               

               
Cow position:
               
chr1:3535126-3535285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
73, 45
               

               
Conread position:
               
34-197
               

               
Cow position:
               
chr1:86113344-86113175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 42
               

               
Conread position:
               
34-197
               

               
Cow position:
               
chr1:100852765-100852919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
34-198
               

               
Cow position:
               
chr1:22231704-22231873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 43
               

               
Conread position:
               
34-198
               

               
Cow position:
               
chr1:50930923-50930756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
102, 70
               

               
Conread position:
               
34-198
               

               
Cow position:
               
chr1:68730056-68730224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
34-199
               

               
Cow position:
               
chr1:77810703-77810542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
102, 69
               

               
Conread position:
               
34-200
               

               
Cow position:
               
chr1:11708962-11708799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
103, 47
               

               
Conread position:
               
34-200
               

               
Cow position:
               
chr1:39684088-39683923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
77, 29
               

               
Conread position:
               
34-200
               

               
Cow position:
               
chr1:52435328-52435500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
47, 34
               

               
Conread position:
               
34-200
               

               
Cow position:
               
chr1:67529111-67529276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
103, 155
               

               
Conread position:
               
34-200
               

               
Cow position:
               
chr1:76474501-76474337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
82, 44
               

               
Conread position:
               
34-201
               

               
Cow position:
               
chr1:67654264-67654103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
102, 64
               

               
Conread position:
               
34-201
               

               
Cow position:
               
chr1:102753915-102754072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
102, 59
               

               
Conread position:
               
34-204
               

               
Cow position:
               
chr1:43379306-43379137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
102, 148
               

               
Conread position:
               
34-204
               

               
Cow position:
               
chr1:55110548-55110727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
68, 162
               

               
Conread position:
               
34-204
               

               
Cow position:
               
chr1:81858844-81858677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
102, 65
               

               
Conread position:
               
34-205
               

               
Cow position:
               
chr1:71946028-71945853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
64, 118
               

               
Conread position:
               
34-212
               

               
Cow position:
               
chr1:16060948-16060773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
103, 59
               

               
Conread position:
               
34-279
               

               
Cow position:
               
chr1:69500404-69500165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
87, 43
               

               
Conread position:
               
35-160
               

               
Cow position:
               
chr1:53398032-53398155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
101, 65
               

               
Conread position:
               
35-163
               

               
Cow position:
               
chr1:99642312-99642184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
102, 59
               

               
Conread position:
               
35-169
               

               
Cow position:
               
chr1:95499439-95499305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
62, 83
               

               
Conread position:
               
35-170
               

               
Cow position:
               
chr1:9437232-9437094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
99, 46
               

               
Conread position:
               
35-170
               

               
Cow position:
               
chr1:22394618-22394481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
35-170
               

               
Cow position:
               
chr1:83025107-83024973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
36, 59
               

               
Conread position:
               
35-171
               

               
Cow position:
               
chr1:6941525-6941659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
101, 68
               

               
Conread position:
               
35-171
               

               
Cow position:
               
chr1:6958938-6959072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
101, 68
               

               
Conread position:
               
35-171
               

               
Cow position:
               
chr1:61134469-61134608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
35-171
               

               
Cow position:
               
chr1:78793945-78793810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
102, 64
               

               
Conread position:
               
35-172
               

               
Cow position:
               
chr1:23633873-23633733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
53, 44
               

               
Conread position:
               
35-172
               

               
Cow position:
               
chr1:91743405-91743269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
101, 69
               

               
Conread position:
               
35-172
               

               
Cow position:
               
chr1:97090383-97090511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
35-175
               

               
Cow position:
               
chr1:95072389-95072540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
35-175
               

               
Cow position:
               
chr1:101789036-101788900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
101, 67
               

               
Conread position:
               
35-176
               

               
Cow position:
               
chr1:73719518-73719669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
35-177
               

               
Cow position:
               
chr1:79170096-79169954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
72, 120
               

               
Conread position:
               
35-178
               

               
Cow position:
               
chr1:33206823-33206674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
35-178
               

               
Cow position:
               
chr1:53651044-53651179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
96, 12
               

               
Conread position:
               
35-178
               

               
Cow position:
               
chr1:71636266-71636128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
101, 38
               

               
Conread position:
               
35-179
               

               
Cow position:
               
chr1:16767031-16766885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
35-179
               

               
Cow position:
               
chr1:30983440-30983291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
35-179
               

               
Cow position:
               
chr1:45555423-45555566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
105, 44
               

               
Conread position:
               
35-179
               

               
Cow position:
               
chr1:82337723-82337579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
102, 83
               

               
Conread position:
               
35-179
               

               
Cow position:
               
chr1:92363606-92363469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
102, 42
               

               
Conread position:
               
35-179
               

               
Cow position:
               
chr1:97540692-97540840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
27, 35
               

               
Conread position:
               
35-179
               

               
Cow position:
               
chr1:99609425-99609568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
102, 76
               

               
Conread position:
               
35-179
               

               
Cow position:
               
chr1:100474291-100474440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
35-179
               

               
Cow position:
               
chr1:100512952-100513098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
85, 38
               

               
Conread position:
               
35-182
               

               
Cow position:
               
chr1:47886423-47886278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
77, 68
               

               
Conread position:
               
35-182
               

               
Cow position:
               
chr1:51860504-51860360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
101, 73
               

               
Conread position:
               
35-183
               

               
Cow position:
               
chr1:7452966-7453119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
64, 15
               

               
Conread position:
               
35-183
               

               
Cow position:
               
chr1:10470483-10470627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
101, 64
               

               
Conread position:
               
35-183
               

               
Cow position:
               
chr1:46354382-46354235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
101, 69
               

               
Conread position:
               
35-183
               

               
Cow position:
               
chr1:55230033-55230178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
102, 73
               

               
Conread position:
               
35-183
               

               
Cow position:
               
chr1:64572572-64572719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
101, 58
               

               
Conread position:
               
35-183
               

               
Cow position:
               
chr1:71790091-71789943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
76, 31
               

               
Conread position:
               
35-183
               

               
Cow position:
               
chr1:73545854-73545703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
55, 42
               

               
Conread position:
               
35-183
               

               
Cow position:
               
chr1:85622586-85622737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
35-183
               

               
Cow position:
               
chr1:87149758-87149611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
101, 68
               

               
Conread position:
               
35-183
               

               
Cow position:
               
chr1:88359935-88360090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
35-183
               

               
Cow position:
               
chr1:89146818-89146667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
35-183
               

               
Cow position:
               
chr1:89835774-89835915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
101, 59
               

               
Conread position:
               
35-183
               

               
Cow position:
               
chr1:95654362-95654208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
56, 91
               

               
Conread position:
               
35-183
               

               
Cow position:
               
chr1:100800711-100800564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
102, 59
               

               
Conread position:
               
35-184
               

               
Cow position:
               
chr1:12464607-12464459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
59, 74
               

               
Conread position:
               
35-184
               

               
Cow position:
               
chr1:30949049-30949188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
101, 14
               

               
Conread position:
               
35-184
               

               
Cow position:
               
chr1:35162467-35162611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
35-184
               

               
Cow position:
               
chr1:38706797-38706647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
74, 63
               

               
Conread position:
               
35-184
               

               
Cow position:
               
chr1:53456868-53457018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
101, 5
               

               
Conread position:
               
35-184
               

               
Cow position:
               
chr1:79718864-79719014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
74, 14
               

               
Conread position:
               
35-184
               

               
Cow position:
               
chr1:94823335-94823183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
35-184
               

               
Cow position:
               
chr1:102306088-102305941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
101, 12
               

               
Conread position:
               
35-185
               

               
Cow position:
               
chr1:19384399-19384251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
101, 82
               

               
Conread position:
               
35-185
               

               
Cow position:
               
chr1:42291982-42292124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
35-185
               

               
Cow position:
               
chr1:93235873-93235727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
102, 33
               

               
Conread position:
               
35-185
               

               
Cow position:
               
chr1:95976390-95976539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
36, 90
               

               
Conread position:
               
35-186
               

               
Cow position:
               
chr1:33998813-33998957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
102, 58
               

               
Conread position:
               
35-186
               

               
Cow position:
               
chr1:43505586-43505732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
101, 68
               

               
Conread position:
               
35-186
               

               
Cow position:
               
chr1:68855222-68855375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
56, 75
               

               
Conread position:
               
35-186
               

               
Cow position:
               
chr1:75744919-75745068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
55, 84
               

               
Conread position:
               
35-186
               

               
Cow position:
               
chr1:101280681-101280530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
101, 138
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:1606079-1605922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:3923743-3923595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
101, 68
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:4582607-4582761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
67, 120
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:7748270-7748425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
68, 120
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:7752436-7752589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
68, 118
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:10633103-10633249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
101, 59
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:10778620-10778763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
101, 66
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:11172428-11172577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
103, 22
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:19599304-19599151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
81, 44
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:20104323-20104475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
57, 70
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:24777936-24777775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
65, 16
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:37726363-37726204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:40077851-40078001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
146, 64
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:42541655-42541800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
101, 65
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:42796934-42797087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
73, 128
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:43855352-43855497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
102, 63
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:56225842-56225991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
101, 58
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:61391732-61391587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
107, 38
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:63460935-63461087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
101, 57
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:69250491-69250641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
77, 44
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:71119578-71119731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
76, 29
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:75227263-75227116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
112, 68
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:76518479-76518633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
58, 38
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:81481325-81481177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
101, 68
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:92197510-92197663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
57, 121
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:99637197-99637042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
27, 34
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:100573570-100573419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
101, 69
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:102648335-102648489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
35-188
               

               
Cow position:
               
chr1:43311715-43311562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
25, 132
               

               
Conread position:
               
35-188
               

               
Cow position:
               
chr1:49980766-49980918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
101, 82
               

               
Conread position:
               
35-188
               

               
Cow position:
               
chr1:57575707-57575554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
101, 64
               

               
Conread position:
               
35-188
               

               
Cow position:
               
chr1:89388401-89388553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
101, 68
               

               
Conread position:
               
35-189
               

               
Cow position:
               
chr1:54645484-54645636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
65, 103
               

               
Conread position:
               
35-190
               

               
Cow position:
               
chr1:72813673-72813830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
72, 103
               

               
Conread position:
               
35-190
               

               
Cow position:
               
chr1:102523584-102523429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
66, 147
               

               
Conread position:
               
35-191
               

               
Cow position:
               
chr1:71664840-71664681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
35-192
               

               
Cow position:
               
chr1:874711-874879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
35-192
               

               
Cow position:
               
chr1:66752572-66752418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
102, 68
               

               
Conread position:
               
35-192
               

               
Cow position:
               
chr1:78066480-78066329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
101, 67
               

               
Conread position:
               
35-192
               

               
Cow position:
               
chr1:82513296-82513138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
59, 46
               

               
Conread position:
               
35-194
               

               
Cow position:
               
chr1:5872722-5872558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
35-194
               

               
Cow position:
               
chr1:18936780-18936619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
69, 44
               

               
Conread position:
               
35-194
               

               
Cow position:
               
chr1:20537262-20537420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
101, 74
               

               
Conread position:
               
35-194
               

               
Cow position:
               
chr1:74929654-74929492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
55, 42
               

               
Conread position:
               
35-194
               

               
Cow position:
               
chr1:92188014-92188177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
35-194
               

               
Cow position:
               
chr1:95835741-95835577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
35-194
               

               
Cow position:
               
chr1:101866440-101866281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
135, 44
               

               
Conread position:
               
35-195
               

               
Cow position:
               
chr1:31274933-31274773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
78, 149
               

               
Conread position:
               
35-195
               

               
Cow position:
               
chr1:42774967-42775122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
58, 75
               

               
Conread position:
               
35-195
               

               
Cow position:
               
chr1:43352599-43352439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
68, 149
               

               
Conread position:
               
35-195
               

               
Cow position:
               
chr1:52912840-52912675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
85, 14
               

               
Conread position:
               
35-195
               

               
Cow position:
               
chr1:55753159-55753002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
100, 68
               

               
Conread position:
               
35-195
               

               
Cow position:
               
chr1:62519420-62519584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
26, 31
               

               
Conread position:
               
35-195
               

               
Cow position:
               
chr1:68710335-68710499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
52, 152
               

               
Conread position:
               
35-195
               

               
Cow position:
               
chr1:69411640-69411481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
68, 148
               

               
Conread position:
               
35-195
               

               
Cow position:
               
chr1:76613078-76612915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
35-195
               

               
Cow position:
               
chr1:79178685-79178849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
35-196
               

               
Cow position:
               
chr1:1981056-1980893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
50, 78
               

               
Conread position:
               
35-196
               

               
Cow position:
               
chr1:3130492-3130333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
72, 44
               

               
Conread position:
               
35-196
               

               
Cow position:
               
chr1:4294401-4294565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 44
               

               
Conread position:
               
35-196
               

               
Cow position:
               
chr1:21955316-21955154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
74, 42
               

               
Conread position:
               
35-196
               

               
Cow position:
               
chr1:38544198-38544027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
35-196
               

               
Cow position:
               
chr1:44507030-44507185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
102, 55
               

               
Conread position:
               
35-196
               

               
Cow position:
               
chr1:55685921-55685761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
58, 78
               

               
Conread position:
               
35-196
               

               
Cow position:
               
chr1:61012370-61012524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
101, 47
               

               
Conread position:
               
35-196
               

               
Cow position:
               
chr1:64516835-64516680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
101, 46
               

               
Conread position:
               
35-196
               

               
Cow position:
               
chr1:70416703-70416544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
102, 67
               

               
Conread position:
               
35-196
               

               
Cow position:
               
chr1:79640231-79640072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
102, 82
               

               
Conread position:
               
35-196
               

               
Cow position:
               
chr1:97986392-97986226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
35-197
               

               
Cow position:
               
chr1:524865-525024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
102, 56
               

               
Conread position:
               
35-197
               

               
Cow position:
               
chr1:731916-731754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
65, 123
               

               
Conread position:
               
35-197
               

               
Cow position:
               
chr1:5479603-5479443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
53, 42
               

               
Conread position:
               
35-197
               

               
Cow position:
               
chr1:22828513-22828357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
101, 68
               

               
Conread position:
               
35-197
               

               
Cow position:
               
chr1:52662116-52661960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
92, 64
               

               
Conread position:
               
35-197
               

               
Cow position:
               
chr1:60045042-60045202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
72, 44
               

               
Conread position:
               
35-197
               

               
Cow position:
               
chr1:61005506-61005339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
66, 160
               

               
Conread position:
               
35-197
               

               
Cow position:
               
chr1:69442461-69442294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
55, 42
               

               
Conread position:
               
35-197
               

               
Cow position:
               
chr1:69911160-69911331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
66, 155
               

               
Conread position:
               
35-197
               

               
Cow position:
               
chr1:71295235-71295085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
35-197
               

               
Cow position:
               
chr1:78079776-78079942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
43, 72
               

               
Conread position:
               
35-197
               

               
Cow position:
               
chr1:81364317-81364480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
74, 113
               

               
Conread position:
               
35-197
               

               
Cow position:
               
chr1:89509864-89509713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
100, 59
               

               
Conread position:
               
35-197
               

               
Cow position:
               
chr1:90192473-90192636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
53, 44
               

               
Conread position:
               
35-197
               

               
Cow position:
               
chr1:90267777-90267940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
64, 150
               

               
Conread position:
               
35-197
               

               
Cow position:
               
chr1:96964373-96964538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr1:15875717-15875876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
101, 82
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr1:25955952-25956116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr1:26934215-26934048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
84, 52
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr1:31801862-31801698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
47, 42
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr1:49297708-49297869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
64, 83
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr1:59675660-59675817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
149, 12
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr1:60403823-60403987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
73, 149
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr1:64804045-64803877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
63, 160
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr1:71665875-71665714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
74, 37
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr1:80423675-80423512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
36, 84
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr1:81615711-81615868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
85, 104
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr1:95152928-95153096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
35-199
               

               
Cow position:
               
chr1:484410-484242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
35-199
               

               
Cow position:
               
chr1:4362000-4361833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
55, 42
               

               
Conread position:
               
35-199
               

               
Cow position:
               
chr1:4391214-4391045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
35-199
               

               
Cow position:
               
chr1:6381829-6382000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
73, 25
               

               
Conread position:
               
35-199
               

               
Cow position:
               
chr1:8287573-8287410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
63, 31
               

               
Conread position:
               
35-199
               

               
Cow position:
               
chr1:19515562-19515398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
63, 105
               

               
Conread position:
               
35-199
               

               
Cow position:
               
chr1:32035653-32035492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
101, 67
               

               
Conread position:
               
35-199
               

               
Cow position:
               
chr1:34771446-34771277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
66, 124
               

               
Conread position:
               
35-199
               

               
Cow position:
               
chr1:49825007-49824845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
101, 82
               

               
Conread position:
               
35-199
               

               
Cow position:
               
chr1:50853965-50854132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
62, 151
               

               
Conread position:
               
35-199
               

               
Cow position:
               
chr1:54258624-54258788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
73, 14
               

               
Conread position:
               
35-199
               

               
Cow position:
               
chr1:56225526-56225687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
57, 83
               

               
Conread position:
               
35-199
               

               
Cow position:
               
chr1:61884970-61885133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
105, 56
               

               
Conread position:
               
35-199
               

               
Cow position:
               
chr1:74084134-74083968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
81, 154
               

               
Conread position:
               
35-199
               

               
Cow position:
               
chr1:80385430-80385265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
85, 56
               

               
Conread position:
               
35-199
               

               
Cow position:
               
chr1:84787327-84787481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
102, 64
               

               
Conread position:
               
35-199
               

               
Cow position:
               
chr1:87888442-87888610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
40, 60
               

               
Conread position:
               
35-199
               

               
Cow position:
               
chr1:90879679-90879522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
105, 27
               

               
Conread position:
               
35-199
               

               
Cow position:
               
chr1:102423850-102424017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
49, 44
               

               
Conread position:
               
35-199
               

               
Cow position:
               
chr1:102768234-102768397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
101, 118
               

               
Conread position:
               
35-200
               

               
Cow position:
               
chr1:5010779-5010610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
55, 42
               

               
Conread position:
               
35-200
               

               
Cow position:
               
chr1:9637086-9637254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
73, 31
               

               
Conread position:
               
35-200
               

               
Cow position:
               
chr1:17056048-17056209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
102, 45
               

               
Conread position:
               
35-200
               

               
Cow position:
               
chr1:25022018-25021856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
101, 68
               

               
Conread position:
               
35-200
               

               
Cow position:
               
chr1:36688321-36688159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
82, 40
               

               
Conread position:
               
35-200
               

               
Cow position:
               
chr1:36998242-36998404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
102, 64
               

               
Conread position:
               
35-200
               

               
Cow position:
               
chr1:37470557-37470712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
101, 68
               

               
Conread position:
               
35-200
               

               
Cow position:
               
chr1:42175784-42175948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
101, 147
               

               
Conread position:
               
35-200
               

               
Cow position:
               
chr1:43296662-43296490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
35-200
               

               
Cow position:
               
chr1:48447523-48447691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
70, 18
               

               
Conread position:
               
35-200
               

               
Cow position:
               
chr1:72422351-72422182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
68, 7
               

               
Conread position:
               
35-200
               

               
Cow position:
               
chr1:82917418-82917260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
152, 101
               

               
Conread position:
               
35-200
               

               
Cow position:
               
chr1:83677267-83677103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
74, 38
               

               
Conread position:
               
35-200
               

               
Cow position:
               
chr1:102785011-102785163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
102, 21
               

               
Conread position:
               
35-201
               

               
Cow position:
               
chr1:1802224-1802394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
35-201
               

               
Cow position:
               
chr1:41022476-41022639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
101, 68
               

               
Conread position:
               
35-201
               

               
Cow position:
               
chr1:41953945-41953777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
81, 149
               

               
Conread position:
               
35-201
               

               
Cow position:
               
chr1:101507417-101507571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
109, 38
               

               
Conread position:
               
35-202
               

               
Cow position:
               
chr1:53402838-53403011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
35-202
               

               
Cow position:
               
chr1:56719397-56719567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
102, 45
               

               
Conread position:
               
35-202
               

               
Cow position:
               
chr1:100727730-100727569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
40, 27
               

               
Conread position:
               
35-203
               

               
Cow position:
               
chr1:26984066-26984237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
35-203
               

               
Cow position:
               
chr1:48301394-48301227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
65, 83
               

               
Conread position:
               
35-203
               

               
Cow position:
               
chr1:70044410-70044571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
102, 65
               

               
Conread position:
               
35-203
               

               
Cow position:
               
chr1:95156907-95156741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
105, 82
               

               
Conread position:
               
35-204
               

               
Cow position:
               
chr1:30028175-30028005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
66, 84
               

               
Conread position:
               
35-204
               

               
Cow position:
               
chr1:51968594-51968749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
101, 65
               

               
Conread position:
               
35-204
               

               
Cow position:
               
chr1:64811292-64811465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
57, 72
               

               
Conread position:
               
35-204
               

               
Cow position:
               
chr1:67674546-67674381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
48, 38
               

               
Conread position:
               
35-204
               

               
Cow position:
               
chr1:71350670-71350498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
35-204
               

               
Cow position:
               
chr1:72011756-72011595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
101, 59
               

               
Conread position:
               
35-204
               

               
Cow position:
               
chr1:81477812-81477637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
35-204
               

               
Cow position:
               
chr1:100823094-100823266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
35-204
               

               
Cow position:
               
chr1:102730705-102730528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
35-205
               

               
Cow position:
               
chr1:62469117-62469284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
57, 70
               

               
Conread position:
               
35-205
               

               
Cow position:
               
chr1:63994498-63994330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
66, 84
               

               
Conread position:
               
35-205
               

               
Cow position:
               
chr1:97144409-97144241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
102, 66
               

               
Conread position:
               
35-207
               

               
Cow position:
               
chr1:32217297-32217470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
6, 69
               

               
Conread position:
               
35-208
               

               
Cow position:
               
chr1:6394614-6394789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
47, 38
               

               
Conread position:
               
35-208
               

               
Cow position:
               
chr1:48695492-48695318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
76, 44
               

               
Conread position:
               
35-208
               

               
Cow position:
               
chr1:52139571-52139401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
55, 42
               

               
Conread position:
               
35-211
               

               
Cow position:
               
chr1:22823962-22824145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
35-219
               

               
Cow position:
               
chr1:64458022-64458214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
35-244
               

               
Cow position:
               
chr1:20871502-20871289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
70, 158
               

               
Conread position:
               
35-252
               

               
Cow position:
               
chr1:101883337-101883118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
73, 179
               

               
Conread position:
               
35-279
               

               
Cow position:
               
chr1:90904699-90904458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
101, 69
               

               
Conread position:
               
36-153
               

               
Cow position:
               
chr1:49433206-49433086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
36-169
               

               
Cow position:
               
chr1:17196569-17196434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
36-174
               

               
Cow position:
               
chr1:23372917-23373057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
71, 58
               

               
Conread position:
               
36-184
               

               
Cow position:
               
chr1:6731238-6731385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
100, 81
               

               
Conread position:
               
36-184
               

               
Cow position:
               
chr1:101714175-101714322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
100, 81
               

               
Conread position:
               
36-186
               

               
Cow position:
               
chr1:4329845-4329700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
100, 57
               

               
Conread position:
               
36-187
               

               
Cow position:
               
chr1:20667684-20667541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
107, 46
               

               
Conread position:
               
36-190
               

               
Cow position:
               
chr1:65318633-65318789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
67, 44
               

               
Conread position:
               
36-192
               

               
Cow position:
               
chr1:83072499-83072654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
100, 139
               

               
Conread position:
               
36-194
               

               
Cow position:
               
chr1:90820420-90820264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
99, 6
               

               
Conread position:
               
36-195
               

               
Cow position:
               
chr1:20202361-20202516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
36-195
               

               
Cow position:
               
chr1:30189210-30189374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
36-196
               

               
Cow position:
               
chr1:98380239-98380078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
81, 43
               

               
Conread position:
               
36-197
               

               
Cow position:
               
chr1:98467856-98468024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
36-198
               

               
Cow position:
               
chr1:1496474-1496307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
36-198
               

               
Cow position:
               
chr1:5751371-5751531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 91
               

               
Conread position:
               
36-198
               

               
Cow position:
               
chr1:6788087-6787922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
75, 26
               

               
Conread position:
               
36-198
               

               
Cow position:
               
chr1:23101733-23101895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
100, 67
               

               
Conread position:
               
36-198
               

               
Cow position:
               
chr1:33720159-33720323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
68, 152
               

               
Conread position:
               
36-198
               

               
Cow position:
               
chr1:84104003-84103836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
36-198
               

               
Cow position:
               
chr1:93499679-93499839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
113, 43
               

               
Conread position:
               
36-199
               

               
Cow position:
               
chr1:26895753-26895588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
100, 81
               

               
Conread position:
               
36-199
               

               
Cow position:
               
chr1:77986361-77986195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
60, 41
               

               
Conread position:
               
36-200
               

               
Cow position:
               
chr1:54267880-54267716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
100, 13
               

               
Conread position:
               
36-200
               

               
Cow position:
               
chr1:72068777-72068610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
40, 137
               

               
Conread position:
               
36-201
               

               
Cow position:
               
chr1:84594946-84595116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
36-203
               

               
Cow position:
               
chr1:29474289-29474125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
72, 37
               

               
Conread position:
               
36-203
               

               
Cow position:
               
chr1:86340410-86340232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
36-204
               

               
Cow position:
               
chr1:29935329-29935166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
110, 52
               

               
Conread position:
               
36-208
               

               
Cow position:
               
chr1:59551495-59551669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
37-111
               

               
Cow position:
               
chr1:84255826-84255900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
75
               

               
Alignm identity:
               
71
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
37-169
               

               
Cow position:
               
chr1:101525866-101525729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
37-172
               

               
Cow position:
               
chr1:49082802-49082940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
37-172
               

               
Cow position:
               
chr1:100762136-100762268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
100, 66
               

               
Conread position:
               
37-173
               

               
Cow position:
               
chr1:61011240-61011370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
106, 73
               

               
Conread position:
               
37-174
               

               
Cow position:
               
chr1:67743677-67743542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
57, 67
               

               
Conread position:
               
37-177
               

               
Cow position:
               
chr1:10716555-10716704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
37-186
               

               
Cow position:
               
chr1:1956275-1956130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
99, 24
               

               
Conread position:
               
37-186
               

               
Cow position:
               
chr1:20950773-20950925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
37-186
               

               
Cow position:
               
chr1:56748871-56749023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
37-187
               

               
Cow position:
               
chr1:8674-8828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
37-187
               

               
Cow position:
               
chr1:500234-500386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
37-187
               

               
Cow position:
               
chr1:41138085-41137939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
99, 60
               

               
Conread position:
               
37-187
               

               
Cow position:
               
chr1:91066093-91065948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
99, 62
               

               
Conread position:
               
37-188
               

               
Cow position:
               
chr1:22730793-22730943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
64, 54
               

               
Conread position:
               
37-190
               

               
Cow position:
               
chr1:3815626-3815469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
37-197
               

               
Cow position:
               
chr1:1915968-1915810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
72, 36
               

               
Conread position:
               
37-197
               

               
Cow position:
               
chr1:42887218-42887065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
99, 66
               

               
Conread position:
               
37-197
               

               
Cow position:
               
chr1:70175479-70175323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
100, 56
               

               
Conread position:
               
37-197
               

               
Cow position:
               
chr1:81568969-81568811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
99, 80
               

               
Conread position:
               
37-198
               

               
Cow position:
               
chr1:5597152-5596992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
99, 67
               

               
Conread position:
               
37-198
               

               
Cow position:
               
chr1:32014255-32014413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
99, 66
               

               
Conread position:
               
37-198
               

               
Cow position:
               
chr1:51445945-51446104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
100, 46
               

               
Conread position:
               
37-198
               

               
Cow position:
               
chr1:69378540-69378378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
80, 42
               

               
Conread position:
               
37-198
               

               
Cow position:
               
chr1:98563439-98563604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
75, 11
               

               
Conread position:
               
37-198
               

               
Cow position:
               
chr1:98583812-98583965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
99, 66
               

               
Conread position:
               
37-198
               

               
Cow position:
               
chr1:100552034-100552186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
99, 64
               

               
Conread position:
               
37-205
               

               
Cow position:
               
chr1:242616-242777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
100, 65
               

               
Conread position:
               
37-205
               

               
Cow position:
               
chr1:75250169-75250336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
70, 151
               

               
Conread position:
               
37-206
               

               
Cow position:
               
chr1:55428897-55428724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
38-179
               

               
Cow position:
               
chr1:41027134-41027273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
53, 67
               

               
Conread position:
               
38-179
               

               
Cow position:
               
chr1:74305022-74304878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
38-183
               

               
Cow position:
               
chr1:98557059-98556913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
38-184
               

               
Cow position:
               
chr1:98060122-98060265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
98, 65
               

               
Conread position:
               
38-187
               

               
Cow position:
               
chr1:3323931-3324083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
57, 35
               

               
Conread position:
               
38-198
               

               
Cow position:
               
chr1:92524074-92524236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
47, 39
               

               
Conread position:
               
38-199
               

               
Cow position:
               
chr1:40303611-40303772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
98, 70
               

               
Conread position:
               
38-200
               

               
Cow position:
               
chr1:196945-196788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
63, 45
               

               
Conread position:
               
38-200
               

               
Cow position:
               
chr1:2523022-2523187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
61, 83
               

               
Conread position:
               
38-200
               

               
Cow position:
               
chr1:91023407-91023246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
98, 110
               

               
Conread position:
               
38-201
               

               
Cow position:
               
chr1:100152338-100152506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
71, 9
               

               
Conread position:
               
38-206
               

               
Cow position:
               
chr1:23968998-23968835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
98, 55
               

               
Conread position:
               
39-194
               

               
Cow position:
               
chr1:70476690-70476537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
99, 40
               

               
Conread position:
               
39-199
               

               
Cow position:
               
chr1:94713104-94712940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
78, 52
               

               
Conread position:
               
40-179
               

               
Cow position:
               
chr1:86057013-86056877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
97, 69
               

               
Conread position:
               
40-219
               

               
Cow position:
               
chr1:44814608-44814423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
62, 168
               

               
Conread position:
               
41-196
               

               
Cow position:
               
chr1:53370146-53370303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
63, 112
               

               
Conread position:
               
41-197
               

               
Cow position:
               
chr1:73644444-73644289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
95, 76
               

               
Conread position:
               
44-183
               

               
Cow position:
               
chr1:22729122-22729259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
92, 59
               

               
Conread position:
               
44-186
               

               
Cow position:
               
chr1:8133989-8134134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
65, 35
               

               
Conread position:
               
44-187
               

               
Cow position:
               
chr1:2935222-2935374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
44-187
               

               
Cow position:
               
chr1:11770170-11770033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 22
               

               
Conread position:
               
44-188
               

               
Cow position:
               
chr1:77099058-77098917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
93, 54
               

               
Conread position:
               
44-199
               

               
Cow position:
               
chr1:64705965-64706119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
40, 35
               

               
Conread position:
               
45-187
               

               
Cow position:
               
chr1:92578766-92578625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
92, 54
               

               
Conread position:
               
46-194
               

               
Cow position:
               
chr1:45233059-45233197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
91, 41
               

               
Conread position:
               
46-199
               

               
Cow position:
               
chr1:24542502-24542347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
46, 57
               

               
Conread position:
               
48-188
               

               
Cow position:
               
chr1:61560431-61560284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
48-197
               

               
Cow position:
               
chr1:43340564-43340412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
48-201
               

               
Cow position:
               
chr1:34767357-34767518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
51-211
               

               
Cow position:
               
chr1:45262644-45262486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
43, 17
               

               
Conread position:
               
52-187
               

               
Cow position:
               
chr1:56107263-56107129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
84, 52
               

               
Conread position:
               
54-186
               

               
Cow position:
               
chr1:8778259-8778130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
82, 54
               

               
Conread position:
               
55-218
               

               
Cow position:
               
chr1:709828-709664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
63, 101
               

               
Conread position:
               
56-195
               

               
Cow position:
               
chr1:77704866-77704725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
53, 132
               

               
Conread position:
               
56-198
               

               
Cow position:
               
chr1:99221555-99221414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
81, 62
               

               
Conread position:
               
57-198
               

               
Cow position:
               
chr1:43052422-43052282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
79, 47
               

               
Conread position:
               
58-197
               

               
Cow position:
               
chr1:95966403-95966256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
60-187
               

               
Cow position:
               
chr1:93960078-93959953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
76, 90
               

               
Conread position:
               
63-196
               

               
Cow position:
               
chr1:14067359-14067224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
63-200
               

               
Cow position:
               
chr1:46294506-46294378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
77, 24
               

               
Conread position:
               
64-201
               

               
Cow position:
               
chr1:51292231-51292362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
73, 39
               

               
Conread position:
               
65-182
               

               
Cow position:
               
chr1:100791142-100791026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
71, 52
               

               
Conread position:
               
67-205
               

               
Cow position:
               
chr1:20205429-20205574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
68-200
               

               
Cow position:
               
chr1:83066741-83066607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
28, 51
               

               
Conread position:
               
69-195
               

               
Cow position:
               
chr1:87989100-87988977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
67, 84
               

               
Conread position:
               
81-208
               

               
Cow position:
               
chr1:5599012-5599142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 105
               

               
Conread position:
               
82-200
               

               
Cow position:
               
chr1:81391023-81391143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
21, 106
               

               
Conread position:
               
83-198
               

               
Cow position:
               
chr1:92782794-92782678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 34
               
Show alignments to all cow chromosomes.