Cow genome map
| Conread name: | rche15_o20.y1 |
| Conread position: | 1-153 |
| Cow position: | chr1:87946166-87946312 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-159 |
| Cow position: | chr1:78131093-78131248 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-160 |
| Cow position: | chr1:5304004-5304163 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 50, 140 |
| Conread position: | 1-160 |
| Cow position: | chr1:92612765-92612605 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-383 |
| Cow position: | chr1:92260247-92259852 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 8 |
| Conread position: | 2-160 |
| Cow position: | chr1:4045274-4045121 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 125, 23 |
| Conread position: | 2-403 |
| Cow position: | chr1:7834043-7834422 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 3-155 |
| Cow position: | chr1:47472117-47472264 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 3-155 |
| Cow position: | chr1:54440677-54440525 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-160 |
| Cow position: | chr1:68531020-68530863 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-160 |
| Cow position: | chr1:102516081-102515929 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 5-159 |
| Cow position: | chr1:12040844-12040692 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 5-159 |
| Cow position: | chr1:102532208-102532065 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-160 |
| Cow position: | chr1:82516315-82516163 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 5-165 |
| Cow position: | chr1:81234367-81234207 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-190 |
| Cow position: | chr1:100819521-100819705 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 5-306 |
| Cow position: | chr1:96658396-96658099 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 21 |
| Conread position: | 5-413 |
| Cow position: | chr1:51445065-51445484 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 310 |
| Conread position: | 14-411 |
| Cow position: | chr1:89002153-89002533 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 389, 157 |
| Conread position: | 15-161 |
| Cow position: | chr1:91763438-91763295 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 35-155 |
| Cow position: | chr1:98246778-98246658 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 111, 52 |
| Conread position: | 35-159 |
| Cow position: | chr1:79626558-79626682 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-306 |
| Cow position: | chr1:98081367-98081111 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 77, 87 |
| Conread position: | 35-414 |
| Cow position: | chr1:67884532-67884888 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 128 |
| Conread position: | 54-384 |
| Cow position: | chr1:3970663-3970345 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 34 |
| Conread position: | 57-251 |
| Cow position: | chr1:63997340-63997535 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 153 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 60-392 |
| Cow position: | chr1:15218839-15218496 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 89, 214 |
| Conread position: | 65-411 |
| Cow position: | chr1:89489751-89490096 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 67-349 |
| Cow position: | chr1:656426-656139 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 138-413 |
| Cow position: | chr1:101893079-101893353 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 68 |
| Conread position: | 176-381 |
| Cow position: | chr1:78131293-78131497 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 111, 127 |
| Conread position: | 176-395 |
| Cow position: | chr1:5216149-5215932 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 173 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 96, 126 |
| Conread position: | 176-395 |
| Cow position: | chr1:101661479-101661271 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 164, 115 |
| Conread position: | 190-418 |
| Cow position: | chr1:100819960-100820189 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 115 |
| Conread position: | 203-384 |
| Cow position: | chr1:81234200-81234024 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 137, 5 |
| Conread position: | 273-414 |
| Cow position: | chr1:89496227-89496368 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 67, 32 |
| Conread position: | 273-416 |
| Cow position: | chr1:98080654-98080509 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 71, 34 |
| Conread position: | 281-414 |
| Cow position: | chr1:15313236-15313106 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 282-414 |
| Cow position: | chr1:96658093-96657961 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 60, 25 |
Show alignments to all cow chromosomes.