Cow genome map
| Conread name: | rche20_m9.y1 |
| Conread position: | 1-317 |
| Cow position: | chr1:50593353-50593031 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 1-359 |
| Cow position: | chr1:79100199-79100533 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 113, 18 |
| Conread position: | 1-395 |
| Cow position: | chr1:66913921-66913535 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 83, 25 |
| Conread position: | 1-401 |
| Cow position: | chr1:97141355-97141745 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 107, 150 |
| Conread position: | 2-315 |
| Cow position: | chr1:40589456-40589143 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 67, 91 |
| Conread position: | 2-443 |
| Cow position: | chr1:92283845-92283420 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 301 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 12, 147 |
| Conread position: | 3-320 |
| Cow position: | chr1:30363108-30362793 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 220 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 107, 130 |
| Conread position: | 4-285 |
| Cow position: | chr1:92874093-92873819 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 152, 36 |
| Conread position: | 4-319 |
| Cow position: | chr1:39721640-39721949 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 58, 115 |
| Conread position: | 4-320 |
| Cow position: | chr1:55017425-55017738 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 143, 23 |
| Conread position: | 4-322 |
| Cow position: | chr1:38712374-38712051 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 12, 245 |
| Conread position: | 4-322 |
| Cow position: | chr1:42080103-42079798 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 58 |
| Conread position: | 4-328 |
| Cow position: | chr1:33716621-33716296 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 109, 130 |
| Conread position: | 4-331 |
| Cow position: | chr1:83059981-83060311 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 110, 281 |
| Conread position: | 4-337 |
| Cow position: | chr1:79296465-79296127 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 104, 68 |
| Conread position: | 4-396 |
| Cow position: | chr1:5420154-5420542 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 27 |
| Conread position: | 4-439 |
| Cow position: | chr1:50371400-50371842 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 308 |
| Conread position: | 5-314 |
| Cow position: | chr1:11002963-11002643 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 53, 147 |
| Conread position: | 5-333 |
| Cow position: | chr1:79646263-79646594 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 106, 266 |
| Conread position: | 5-336 |
| Cow position: | chr1:56652678-56653008 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 139, 306 |
| Conread position: | 5-339 |
| Cow position: | chr1:55269217-55269555 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 109, 154 |
| Conread position: | 5-387 |
| Cow position: | chr1:87519105-87519486 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 84 |
| Conread position: | 6-321 |
| Cow position: | chr1:61097159-61096842 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 6-336 |
| Cow position: | chr1:46347618-46347304 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 108, 39 |
| Conread position: | 7-319 |
| Cow position: | chr1:45209245-45208927 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 159, 65 |
| Conread position: | 7-397 |
| Cow position: | chr1:89208-88822 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 48 |
| Conread position: | 8-395 |
| Cow position: | chr1:50420409-50420794 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 259 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 105, 21 |
| Conread position: | 10-256 |
| Cow position: | chr1:100029853-100029605 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 33, 98 |
| Conread position: | 10-397 |
| Cow position: | chr1:26742618-26742987 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 263 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 65, 12 |
| Conread position: | 10-397 |
| Cow position: | chr1:57669497-57669862 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 48, 122 |
| Conread position: | 14-365 |
| Cow position: | chr1:41974223-41974563 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 182, 29 |
| Conread position: | 15-336 |
| Cow position: | chr1:47163365-47163046 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 128, 83 |
| Conread position: | 75-387 |
| Cow position: | chr1:25911520-25911211 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 21, 116 |
| Conread position: | 107-336 |
| Cow position: | chr1:25740710-25740937 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 50, 25 |
| Conread position: | 118-396 |
| Cow position: | chr1:46038605-46038880 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 40, 11 |
| Conread position: | 149-419 |
| Cow position: | chr1:74517973-74517711 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 6, 32 |
| Conread position: | 170-390 |
| Cow position: | chr1:73643488-73643270 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 184, 117 |
| Conread position: | 198-397 |
| Cow position: | chr1:9563400-9563203 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 154, 109 |
Show alignments to all cow chromosomes.