Cow genome map
| Conread name: | rche20_m9.y1 |
| Conread position: | 4-302 |
| Cow position: | chr3:52513990-52513699 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 106, 27 |
| Conread position: | 4-304 |
| Cow position: | chr3:16883794-16884081 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 107, 57 |
| Conread position: | 4-310 |
| Cow position: | chr3:63176880-63176579 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 50, 27 |
| Conread position: | 4-312 |
| Cow position: | chr3:42982721-42983028 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 153, 123 |
| Conread position: | 4-313 |
| Cow position: | chr3:63159585-63159278 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 139, 67 |
| Conread position: | 4-320 |
| Cow position: | chr3:64654205-64653887 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 111, 12 |
| Conread position: | 4-321 |
| Cow position: | chr3:75038303-75038622 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 4-322 |
| Cow position: | chr3:2851697-2852027 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 49, 232 |
| Conread position: | 4-323 |
| Cow position: | chr3:39921408-39921729 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 218 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 111, 120 |
| Conread position: | 4-331 |
| Cow position: | chr3:30615405-30615733 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 113, 80 |
| Conread position: | 4-391 |
| Cow position: | chr3:81006976-81006604 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 268 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 153, 15 |
| Conread position: | 4-396 |
| Cow position: | chr3:47715810-47715444 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 80 |
| Conread position: | 4-397 |
| Cow position: | chr3:81591192-81591572 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 272 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 153, 15 |
| Conread position: | 5-320 |
| Cow position: | chr3:72863511-72863832 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 106, 273 |
| Conread position: | 5-336 |
| Cow position: | chr3:8002533-8002860 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 115, 168 |
| Conread position: | 5-397 |
| Cow position: | chr3:81087059-81087430 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 153, 22 |
| Conread position: | 6-337 |
| Cow position: | chr3:16716301-16716629 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 104, 128 |
| Conread position: | 7-342 |
| Cow position: | chr3:65961419-65961089 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 39, 126 |
| Conread position: | 7-397 |
| Cow position: | chr3:46125756-46126139 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 275 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 50, 68 |
| Conread position: | 8-397 |
| Cow position: | chr3:25471526-25471144 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 278 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 135, 73 |
| Conread position: | 9-323 |
| Cow position: | chr3:74083683-74083375 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 102, 124 |
| Conread position: | 9-367 |
| Cow position: | chr3:8585883-8586241 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 25 |
| Conread position: | 11-414 |
| Cow position: | chr3:56153818-56153425 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 27, 122 |
| Conread position: | 15-283 |
| Cow position: | chr3:18196073-18195819 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 20-324 |
| Cow position: | chr3:597621-597323 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 140, 82 |
| Conread position: | 26-336 |
| Cow position: | chr3:20578317-20578622 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 102 |
| Conread position: | 26-391 |
| Cow position: | chr3:29802326-29801961 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 84, 73 |
| Conread position: | 30-319 |
| Cow position: | chr3:16635484-16635197 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 81, 32 |
| Conread position: | 35-397 |
| Cow position: | chr3:56919575-56919214 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 21, 107 |
| Conread position: | 40-323 |
| Cow position: | chr3:56103239-56102956 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 72, 44 |
| Conread position: | 46-358 |
| Cow position: | chr3:61887512-61887204 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 68, 17 |
| Conread position: | 47-316 |
| Cow position: | chr3:6956996-6957258 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 28, 53 |
| Conread position: | 48-316 |
| Cow position: | chr3:31524185-31523925 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 10, 49 |
| Conread position: | 55-321 |
| Cow position: | chr3:64426816-64427080 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 6, 32 |
| Conread position: | 77-336 |
| Cow position: | chr3:54680387-54680641 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 142, 61 |
| Conread position: | 84-316 |
| Cow position: | chr3:4811523-4811292 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 118-313 |
| Cow position: | chr3:73406861-73406673 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 14 |
| Conread position: | 135-390 |
| Cow position: | chr3:59752-60006 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 15, 103 |
| Conread position: | 154-316 |
| Cow position: | chr3:73945353-73945515 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 184-354 |
| Cow position: | chr3:56963082-56963247 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 187-454 |
| Cow position: | chr3:23750569-23750313 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 167, 121 |
| Conread position: | 220-335 |
| Cow position: | chr3:58012991-58012877 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 107, 0 |
Show alignments to all cow chromosomes.