Cow genome map
| Conread name: | rche20_m9.y1 |
| Conread position: | 1-311 |
| Cow position: | chrX:17097860-17098173 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 37 |
| Conread position: | 1-312 |
| Cow position: | chrX:27385512-27385810 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 9 |
| Conread position: | 1-316 |
| Cow position: | chrX:18598790-18599101 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 64, 85 |
| Conread position: | 1-323 |
| Cow position: | chrX:23341569-23341893 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 222 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 112, 147 |
| Conread position: | 1-336 |
| Cow position: | chrX:24225201-24225527 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 126, 91 |
| Conread position: | 4-292 |
| Cow position: | chrX:16553212-16552937 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 153, 94 |
| Conread position: | 4-316 |
| Cow position: | chrX:37403816-37404128 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 111, 136 |
| Conread position: | 4-320 |
| Cow position: | chrX:17054989-17054668 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 114, 265 |
| Conread position: | 4-320 |
| Cow position: | chrX:21686039-21685719 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 4-320 |
| Cow position: | chrX:35533271-35532955 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 111, 40 |
| Conread position: | 4-321 |
| Cow position: | chrX:16040261-16040578 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 156, 119 |
| Conread position: | 4-321 |
| Cow position: | chrX:18462555-18462871 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 111, 184 |
| Conread position: | 4-321 |
| Cow position: | chrX:18488294-18488613 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 4-321 |
| Cow position: | chrX:18769329-18769021 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 107, 78 |
| Conread position: | 4-321 |
| Cow position: | chrX:27616223-27615913 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 156, 80 |
| Conread position: | 4-322 |
| Cow position: | chrX:29083498-29083165 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 4-323 |
| Cow position: | chrX:27590614-27590932 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 153, 80 |
| Conread position: | 4-324 |
| Cow position: | chrX:12102545-12102866 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 222 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 108, 201 |
| Conread position: | 4-324 |
| Cow position: | chrX:47000233-47000555 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 109, 58 |
| Conread position: | 4-331 |
| Cow position: | chrX:12360308-12359977 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 4-334 |
| Cow position: | chrX:34206495-34206176 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 52, 102 |
| Conread position: | 4-335 |
| Cow position: | chrX:24129735-24129396 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 239 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 29, 154 |
| Conread position: | 4-336 |
| Cow position: | chrX:508734-509054 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 107, 45 |
| Conread position: | 4-357 |
| Cow position: | chrX:10409664-10410018 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 248 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 71, 38 |
| Conread position: | 4-396 |
| Cow position: | chrX:21206277-21206662 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 268 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 57, 105 |
| Conread position: | 5-313 |
| Cow position: | chrX:23927766-23928065 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 102, 33 |
| Conread position: | 5-323 |
| Cow position: | chrX:23986669-23986348 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 110, 129 |
| Conread position: | 5-331 |
| Cow position: | chrX:38569898-38569574 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 24 |
| Conread position: | 5-360 |
| Cow position: | chrX:25144499-25144169 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 109, 36 |
| Conread position: | 6-323 |
| Cow position: | chrX:24006411-24006733 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 105, 217 |
| Conread position: | 7-286 |
| Cow position: | chrX:2790654-2790373 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 107, 142 |
| Conread position: | 7-316 |
| Cow position: | chrX:23268795-23269096 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 22, 69 |
| Conread position: | 7-336 |
| Cow position: | chrX:8807126-8807447 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 9-334 |
| Cow position: | chrX:6026286-6026606 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 22 |
| Conread position: | 10-311 |
| Cow position: | chrX:7181877-7181577 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 28, 104 |
| Conread position: | 12-429 |
| Cow position: | chrX:31933489-31933906 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 283 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 46, 113 |
| Conread position: | 20-301 |
| Cow position: | chrX:21769776-21770069 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 28-397 |
| Cow position: | chrX:44428359-44428713 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 86, 56 |
| Conread position: | 77-397 |
| Cow position: | chrX:39903158-39903463 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 33, 47 |
| Conread position: | 78-295 |
| Cow position: | chrX:3627831-3627616 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 36, 56 |
| Conread position: | 108-354 |
| Cow position: | chrX:18153165-18153403 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 7, 31 |
| Conread position: | 237-397 |
| Cow position: | chrX:20758063-20758224 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 81, 98 |
Show alignments to all cow chromosomes.