Cow genome map
| Conread name: | rche24_n1.y1 |
| Conread position: | 1-460 |
| Cow position: | chr11:36744813-36744351 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 8 |
| Conread position: | 1-464 |
| Cow position: | chr11:15982989-15983457 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 127 |
| Conread position: | 1-464 |
| Cow position: | chr11:20921382-20920912 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 16 |
| Conread position: | 1-464 |
| Cow position: | chr11:75919788-75920246 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 7 |
| Conread position: | 3-464 |
| Cow position: | chr11:32450237-32450700 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 10 |
| Conread position: | 7-460 |
| Cow position: | chr11:63660207-63659752 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 16 |
| Conread position: | 7-464 |
| Cow position: | chr11:37477740-37477286 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 16 |
| Conread position: | 12-464 |
| Cow position: | chr11:67449873-67450331 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 7 |
| Conread position: | 17-193 |
| Cow position: | chr11:33195235-33195062 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 15, 36 |
| Conread position: | 18-316 |
| Cow position: | chr11:31414857-31414560 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 125, 37 |
| Conread position: | 22-253 |
| Cow position: | chr11:40777347-40777113 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 82, 37 |
| Conread position: | 25-464 |
| Cow position: | chr11:28230362-28229920 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 34 |
| Conread position: | 27-187 |
| Cow position: | chr11:9220622-9220466 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 28-464 |
| Cow position: | chr11:71329033-71329477 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 90 |
| Conread position: | 29-464 |
| Cow position: | chr11:4028159-4027730 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 30 |
| Conread position: | 30-464 |
| Cow position: | chr11:10210568-10210129 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 15 |
| Conread position: | 31-461 |
| Cow position: | chr11:42428729-42429163 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 39 |
| Conread position: | 31-464 |
| Cow position: | chr11:28063083-28063514 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 28 |
| Conread position: | 33-464 |
| Cow position: | chr11:8262300-8261870 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 22 |
| Conread position: | 37-452 |
| Cow position: | chr11:8887750-8887335 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 22 |
| Conread position: | 37-462 |
| Cow position: | chr11:8244122-8244538 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 22 |
| Conread position: | 38-314 |
| Cow position: | chr11:11126318-11126592 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 104, 76 |
| Conread position: | 38-418 |
| Cow position: | chr11:37492244-37491868 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 13 |
| Conread position: | 38-432 |
| Cow position: | chr11:77729126-77728732 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 13 |
| Conread position: | 38-462 |
| Cow position: | chr11:10846845-10847276 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 13 |
| Conread position: | 38-464 |
| Cow position: | chr11:9659994-9659571 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 13 |
| Conread position: | 38-464 |
| Cow position: | chr11:17108286-17107853 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 13 |
| Conread position: | 38-464 |
| Cow position: | chr11:19064850-19064416 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 13 |
| Conread position: | 38-464 |
| Cow position: | chr11:34020309-34020722 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 21 |
| Conread position: | 38-464 |
| Cow position: | chr11:44496186-44495762 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 13 |
| Conread position: | 38-464 |
| Cow position: | chr11:44861125-44860696 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 13 |
| Conread position: | 38-464 |
| Cow position: | chr11:54209027-54209450 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 13 |
| Conread position: | 38-464 |
| Cow position: | chr11:57628647-57628213 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 13 |
| Conread position: | 38-464 |
| Cow position: | chr11:67847167-67846738 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 13 |
| Conread position: | 38-464 |
| Cow position: | chr11:85394409-85393978 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 13 |
| Conread position: | 39-458 |
| Cow position: | chr11:4041660-4041245 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 12 |
| Conread position: | 39-464 |
| Cow position: | chr11:15998300-15998726 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 20 |
| Conread position: | 40-411 |
| Cow position: | chr11:32071516-32071877 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 103, 22 |
| Conread position: | 41-308 |
| Cow position: | chr11:7687324-7687590 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 199 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 111, 26 |
| Conread position: | 42-275 |
| Cow position: | chr11:7073072-7072835 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 7, 78 |
| Conread position: | 42-309 |
| Cow position: | chr11:76375065-76374807 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 181, 9 |
| Conread position: | 42-464 |
| Cow position: | chr11:25526983-25527391 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 72 |
| Conread position: | 43-373 |
| Cow position: | chr11:9736548-9736216 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 76 |
| Conread position: | 43-448 |
| Cow position: | chr11:35228613-35228225 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 208, 59 |
| Conread position: | 43-464 |
| Cow position: | chr11:9158016-9157593 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 8 |
| Conread position: | 44-432 |
| Cow position: | chr11:44895612-44895226 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 254 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 109, 75 |
| Conread position: | 45-464 |
| Cow position: | chr11:12351655-12351232 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 14 |
| Conread position: | 46-464 |
| Cow position: | chr11:1496659-1496241 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 13 |
| Conread position: | 48-464 |
| Cow position: | chr11:3492420-3492844 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 71 |
| Conread position: | 53-432 |
| Cow position: | chr11:30125831-30125453 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 59-287 |
| Cow position: | chr11:17280815-17280593 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 59-366 |
| Cow position: | chr11:77235181-77235495 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 59 |
| Conread position: | 59-464 |
| Cow position: | chr11:21466496-21466910 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 59 |
| Conread position: | 59-464 |
| Cow position: | chr11:52418811-52419221 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 59 |
| Conread position: | 77-432 |
| Cow position: | chr11:7113039-7113390 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 40 |
| Conread position: | 77-464 |
| Cow position: | chr11:30304687-30305064 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 40 |
| Conread position: | 88-464 |
| Cow position: | chr11:9607126-9606744 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 30 |
| Conread position: | 132-432 |
| Cow position: | chr11:45110855-45111156 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 107 |
| Conread position: | 144-464 |
| Cow position: | chr11:8282586-8282909 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 93 |
| Conread position: | 172-465 |
| Cow position: | chr11:10089871-10090167 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 65 |
| Conread position: | 196-464 |
| Cow position: | chr11:66726025-66726297 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 103 |
| Conread position: | 204-366 |
| Cow position: | chr11:46962849-46962692 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 20, 84 |
| Conread position: | 222-449 |
| Cow position: | chr11:65161972-65161745 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 206, 60 |
| Conread position: | 225-464 |
| Cow position: | chr11:37065534-37065288 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 81 |
| Conread position: | 258-463 |
| Cow position: | chr11:40776920-40776710 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 166 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 176, 52 |
| Conread position: | 299-464 |
| Cow position: | chr11:3240310-3240480 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 346-464 |
| Cow position: | chr11:17280585-17280461 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 87, 0 |
Show alignments to all cow chromosomes.