Cow genome map

Conread name: rche24_n1.y1

Conread position: 1-459
Cow position: chr15:20357957-20357513 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 299
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 13, 52

Conread position: 1-460
Cow position: chr15:1519838-1519377 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 47

Conread position: 1-460
Cow position: chr15:22204806-22204340 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 16

Conread position: 1-464
Cow position: chr15:4733171-4733635 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 31

Conread position: 1-464
Cow position: chr15:36970231-36970701 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 12

Conread position: 3-292
Cow position: chr15:32709852-32710145 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 199
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 13, 27

Conread position: 3-344
Cow position: chr15:490848-490510 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 237
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 61, 115

Conread position: 7-314
Cow position: chr15:50144819-50145123 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 46

Conread position: 7-462
Cow position: chr15:40104787-40105239 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 12

Conread position: 8-463
Cow position: chr15:690104-690565 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 59

Conread position: 9-393
Cow position: chr15:11598801-11598414 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 103

Conread position: 10-432
Cow position: chr15:45886119-45886528 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 53

Conread position: 12-307
Cow position: chr15:685480-685785 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 216
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 22, 73

Conread position: 12-464
Cow position: chr15:20748734-20749192 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 41

Conread position: 13-462
Cow position: chr15:1763412-1763865 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 41

Conread position: 13-464
Cow position: chr15:23157508-23157055 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 46

Conread position: 16-464
Cow position: chr15:50124616-50124162 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 103

Conread position: 18-244
Cow position: chr15:21448382-21448613 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 158
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 25, 102

Conread position: 18-458
Cow position: chr15:28490825-28490370 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 104

Conread position: 18-461
Cow position: chr15:17080872-17080427 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 109

Conread position: 22-463
Cow position: chr15:8000913-8000456 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 37

Conread position: 24-317
Cow position: chr15:370326-370031 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 212
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 104, 21

Conread position: 24-462
Cow position: chr15:324274-324715 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 95

Conread position: 24-464
Cow position: chr15:2648328-2647879 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 36

Conread position: 24-464
Cow position: chr15:4195793-4196240 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 29

Conread position: 25-426
Cow position: chr15:55531-55934 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 26

Conread position: 25-464
Cow position: chr15:443938-444386 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 93

Conread position: 25-464
Cow position: chr15:2011414-2011859 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 78

Conread position: 25-464
Cow position: chr15:7233642-7234078 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 26

Conread position: 25-464
Cow position: chr15:13428372-13428816 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 26

Conread position: 25-464
Cow position: chr15:18268657-18268210 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 26

Conread position: 25-464
Cow position: chr15:22920455-22920902 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 93

Conread position: 28-432
Cow position: chr15:44828149-44828547 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 31

Conread position: 28-462
Cow position: chr15:4630576-4630141 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 42

Conread position: 28-464
Cow position: chr15:51215928-51216365 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 31

Conread position: 29-394
Cow position: chr15:2593473-2593114 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 25

Conread position: 32-464
Cow position: chr15:4681560-4682009 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 20

Conread position: 33-427
Cow position: chr15:3038183-3037780 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 83

Conread position: 33-450
Cow position: chr15:3843483-3843064 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 283
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 114, 85

Conread position: 33-464
Cow position: chr15:4764549-4764982 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 87

Conread position: 34-465
Cow position: chr15:4670761-4671206 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 61

Conread position: 35-322
Cow position: chr15:10787751-10787466 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 19

Conread position: 35-464
Cow position: chr15:32722837-32722410 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 296
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 130, 16

Conread position: 35-465
Cow position: chr15:4795020-4795456 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 18

Conread position: 36-338
Cow position: chr15:6371498-6371205 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 15

Conread position: 36-464
Cow position: chr15:35648876-35648454 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 83

Conread position: 37-464
Cow position: chr15:6277917-6277483 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 84

Conread position: 37-464
Cow position: chr15:7544223-7544658 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 16

Conread position: 37-464
Cow position: chr15:35734803-35735232 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 14

Conread position: 38-187
Cow position: chr15:2923858-2924011 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 109, 80

Conread position: 38-338
Cow position: chr15:7933321-7933610 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 13

Conread position: 38-346
Cow position: chr15:7894856-7894557 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 79

Conread position: 38-462
Cow position: chr15:8098829-8099261 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 21

Conread position: 38-462
Cow position: chr15:41365526-41365955 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 13

Conread position: 38-463
Cow position: chr15:35747639-35748069 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 21

Conread position: 38-464
Cow position: chr15:1771845-1772275 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 13

Conread position: 38-464
Cow position: chr15:1781598-1782031 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 74

Conread position: 38-464
Cow position: chr15:7259971-7260401 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 12

Conread position: 38-464
Cow position: chr15:21878010-21877580 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 15

Conread position: 38-464
Cow position: chr15:21960856-21961284 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 13

Conread position: 38-464
Cow position: chr15:24294434-24294868 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 21

Conread position: 38-464
Cow position: chr15:36641972-36642391 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 17

Conread position: 39-464
Cow position: chr15:24793401-24793824 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 11

Conread position: 39-464
Cow position: chr15:42321071-42320644 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 20

Conread position: 40-462
Cow position: chr15:21816402-21815970 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 21

Conread position: 40-464
Cow position: chr15:4384620-4385044 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 21

Conread position: 40-464
Cow position: chr15:17272026-17271620 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 22

Conread position: 40-464
Cow position: chr15:51800086-51800501 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 11

Conread position: 41-272
Cow position: chr15:6594478-6594246 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 167
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 106, 10

Conread position: 42-366
Cow position: chr15:327757-328083 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 236
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 96, 17

Conread position: 42-464
Cow position: chr15:6078082-6078517 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 25

Conread position: 43-464
Cow position: chr15:6472562-6472141 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 8

Conread position: 44-451
Cow position: chr15:1662731-1663130 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 269
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 24, 10

Conread position: 45-464
Cow position: chr15:36648263-36648684 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 72

Conread position: 46-462
Cow position: chr15:17291806-17292213 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 72

Conread position: 46-464
Cow position: chr15:32680193-32679778 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 13

Conread position: 47-287
Cow position: chr15:5070898-5070660 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 167
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 8, 31

Conread position: 49-432
Cow position: chr15:49676381-49676752 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 5

Conread position: 59-463
Cow position: chr15:4170328-4169923 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 58

Conread position: 60-464
Cow position: chr15:53338403-53338805 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 31

Conread position: 62-461
Cow position: chr15:12614432-12614841 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 48

Conread position: 62-464
Cow position: chr15:16506983-16507386 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 264
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 160, 53

Conread position: 88-464
Cow position: chr15:7523112-7522716 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 29

Conread position: 88-464
Cow position: chr15:36627254-36626894 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 268
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 135, 14

Conread position: 106-356
Cow position: chr15:13871175-13871428 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 189
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 41, 12

Conread position: 121-463
Cow position: chr15:29009267-29009615 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 178

Conread position: 131-423
Cow position: chr15:9428401-9428704 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 206
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 11, 117

Conread position: 131-464
Cow position: chr15:3010414-3010074 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 106

Conread position: 132-464
Cow position: chr15:32733346-32733013 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 221
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 87, 10

Conread position: 134-464
Cow position: chr15:4811763-4812097 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 240
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 18, 131

Conread position: 144-291
Cow position: chr15:29288034-29287891 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 70, 0

Conread position: 183-462
Cow position: chr15:16542162-16542444 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 204
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 153, 31

Conread position: 196-464
Cow position: chr15:25789464-25789192 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 110

Conread position: 268-464
Cow position: chr15:24715806-24716001 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 79, 41

Conread position: 336-464
Cow position: chr15:6370135-6370002 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 98, 52

Show alignments to all cow chromosomes.