Cow genome map
| Conread name: | rche24_n1.y1 |
| Conread position: | 1-317 |
| Cow position: | chr16:44965013-44965329 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 61, 119 |
| Conread position: | 1-430 |
| Cow position: | chr16:32605788-32606218 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 1-464 |
| Cow position: | chr16:4303509-4303048 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 1-464 |
| Cow position: | chr16:5918446-5918912 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 13-449 |
| Cow position: | chr16:1430203-1430628 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 29 |
| Conread position: | 13-464 |
| Cow position: | chr16:25440590-25441047 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 105 |
| Conread position: | 13-464 |
| Cow position: | chr16:25458499-25458042 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 105 |
| Conread position: | 25-255 |
| Cow position: | chr16:10376287-10376058 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 117, 26 |
| Conread position: | 25-464 |
| Cow position: | chr16:5660844-5661279 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 26 |
| Conread position: | 28-221 |
| Cow position: | chr16:9777119-9777313 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 119, 31 |
| Conread position: | 28-464 |
| Cow position: | chr16:2411982-2411540 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 31 |
| Conread position: | 28-464 |
| Cow position: | chr16:8817117-8816675 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 31 |
| Conread position: | 28-464 |
| Cow position: | chr16:23982299-23982740 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 31 |
| Conread position: | 30-464 |
| Cow position: | chr16:25157229-25156793 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 88 |
| Conread position: | 31-307 |
| Cow position: | chr16:16687856-16688138 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 205 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 29, 88 |
| Conread position: | 31-464 |
| Cow position: | chr16:25084610-25085050 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 29 |
| Conread position: | 33-449 |
| Cow position: | chr16:9929549-9929949 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 26 |
| Conread position: | 33-464 |
| Cow position: | chr16:49257573-49257154 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 399, 60 |
| Conread position: | 34-444 |
| Cow position: | chr16:36282391-36282804 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 17 |
| Conread position: | 34-464 |
| Cow position: | chr16:40887270-40886831 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 25 |
| Conread position: | 35-405 |
| Cow position: | chr16:25152775-25153127 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 43 |
| Conread position: | 37-432 |
| Cow position: | chr16:18688128-18687734 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 16 |
| Conread position: | 38-241 |
| Cow position: | chr16:19713851-19713646 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 104, 13 |
| Conread position: | 38-305 |
| Cow position: | chr16:49236116-49235850 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 105, 16 |
| Conread position: | 38-342 |
| Cow position: | chr16:7905640-7905946 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 13 |
| Conread position: | 38-415 |
| Cow position: | chr16:29676308-29675936 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 21 |
| Conread position: | 38-432 |
| Cow position: | chr16:2728316-2727910 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 13 |
| Conread position: | 38-451 |
| Cow position: | chr16:6942619-6943040 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 21 |
| Conread position: | 38-459 |
| Cow position: | chr16:2484140-2483718 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 38-464 |
| Cow position: | chr16:1568453-1568025 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 13 |
| Conread position: | 38-464 |
| Cow position: | chr16:6549524-6549095 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 13 |
| Conread position: | 38-464 |
| Cow position: | chr16:20255310-20254882 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 13 |
| Conread position: | 38-464 |
| Cow position: | chr16:28171363-28170934 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 80 |
| Conread position: | 39-464 |
| Cow position: | chr16:42740426-42739994 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 15 |
| Conread position: | 40-363 |
| Cow position: | chr16:23670593-23670274 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 175, 77 |
| Conread position: | 40-410 |
| Cow position: | chr16:32935140-32935528 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 183, 11 |
| Conread position: | 40-464 |
| Cow position: | chr16:36232606-36232181 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 11 |
| Conread position: | 43-461 |
| Cow position: | chr16:31751-32166 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 27 |
| Conread position: | 44-282 |
| Cow position: | chr16:6966478-6966709 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 49, 15 |
| Conread position: | 44-430 |
| Cow position: | chr16:5888487-5888855 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 274 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 103, 63 |
| Conread position: | 45-432 |
| Cow position: | chr16:47562693-47563072 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 73 |
| Conread position: | 45-463 |
| Cow position: | chr16:51685447-51685865 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 289 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 10, 26 |
| Conread position: | 45-464 |
| Cow position: | chr16:11052175-11052591 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 72 |
| Conread position: | 53-464 |
| Cow position: | chr16:42051341-42050958 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 59-430 |
| Cow position: | chr16:11111917-11111554 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 87, 37 |
| Conread position: | 62-432 |
| Cow position: | chr16:54647346-54647708 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 253 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 78, 55 |
| Conread position: | 70-464 |
| Cow position: | chr16:16276477-16276078 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 45 |
| Conread position: | 77-464 |
| Cow position: | chr16:36362313-36361934 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 36 |
| Conread position: | 88-464 |
| Cow position: | chr16:56551174-56551554 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 29 |
| Conread position: | 90-444 |
| Cow position: | chr16:10808214-10808562 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 27 |
| Conread position: | 96-270 |
| Cow position: | chr16:56320891-56321069 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 51, 22 |
| Conread position: | 98-463 |
| Cow position: | chr16:39820694-39821060 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 19 |
| Conread position: | 130-464 |
| Cow position: | chr16:335391-335720 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 132-464 |
| Cow position: | chr16:34529417-34529750 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 148 |
Show alignments to all cow chromosomes.