Cow genome map
| Conread name: | rche24_n1.y1 |
| Conread position: | 1-270 |
| Cow position: | chr18:37585918-37585648 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 1-464 |
| Cow position: | chr18:22602232-22602702 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 1-464 |
| Cow position: | chr18:33953822-33953354 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 3-319 |
| Cow position: | chr18:51660164-51660481 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 20 |
| Conread position: | 7-464 |
| Cow position: | chr18:19352140-19352600 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 16 |
| Conread position: | 9-464 |
| Cow position: | chr18:2887272-2886806 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 59 |
| Conread position: | 10-413 |
| Cow position: | chr18:44621518-44621917 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 13 |
| Conread position: | 12-464 |
| Cow position: | chr18:43147166-43146711 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 33 |
| Conread position: | 24-465 |
| Cow position: | chr18:6869489-6869043 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 97 |
| Conread position: | 28-370 |
| Cow position: | chr18:27986801-27987142 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 31 |
| Conread position: | 28-464 |
| Cow position: | chr18:14415751-14416191 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 31 |
| Conread position: | 28-464 |
| Cow position: | chr18:28974126-28973688 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 31 |
| Conread position: | 28-464 |
| Cow position: | chr18:40478155-40478598 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 25 |
| Conread position: | 30-464 |
| Cow position: | chr18:16660232-16659803 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 31-463 |
| Cow position: | chr18:44601317-44601733 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 136, 35 |
| Conread position: | 33-464 |
| Cow position: | chr18:51257758-51258198 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 84 |
| Conread position: | 33-464 |
| Cow position: | chr18:54172067-54171645 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 29 |
| Conread position: | 34-464 |
| Cow position: | chr18:35335264-35335694 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 84 |
| Conread position: | 35-464 |
| Cow position: | chr18:32293553-32293982 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 16 |
| Conread position: | 36-464 |
| Cow position: | chr18:23944592-23944160 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 23 |
| Conread position: | 38-274 |
| Cow position: | chr18:51464690-51464457 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 185, 13 |
| Conread position: | 38-419 |
| Cow position: | chr18:17992780-17992401 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 13 |
| Conread position: | 38-457 |
| Cow position: | chr18:33335653-33336075 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 21 |
| Conread position: | 38-464 |
| Cow position: | chr18:1520911-1521343 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 21 |
| Conread position: | 38-464 |
| Cow position: | chr18:16078484-16078932 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 13 |
| Conread position: | 38-464 |
| Cow position: | chr18:33268622-33269040 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 21 |
| Conread position: | 38-464 |
| Cow position: | chr18:33358649-33359080 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 13 |
| Conread position: | 38-464 |
| Cow position: | chr18:36508114-36508547 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 13 |
| Conread position: | 38-464 |
| Cow position: | chr18:37504846-37505279 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 13 |
| Conread position: | 38-464 |
| Cow position: | chr18:47741799-47742233 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 13 |
| Conread position: | 38-464 |
| Cow position: | chr18:48221659-48222094 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 13 |
| Conread position: | 38-464 |
| Cow position: | chr18:51310363-51310800 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 78 |
| Conread position: | 38-464 |
| Cow position: | chr18:55089144-55088710 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 13 |
| Conread position: | 38-465 |
| Cow position: | chr18:39748363-39748794 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 13 |
| Conread position: | 39-431 |
| Cow position: | chr18:29900106-29900481 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 104, 75 |
| Conread position: | 39-464 |
| Cow position: | chr18:16533766-16534193 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 40-451 |
| Cow position: | chr18:45958477-45958880 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 98, 22 |
| Conread position: | 41-330 |
| Cow position: | chr18:48301562-48301273 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 101, 21 |
| Conread position: | 43-463 |
| Cow position: | chr18:16393857-16393434 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 77 |
| Conread position: | 43-464 |
| Cow position: | chr18:37599742-37599327 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 74 |
| Conread position: | 45-274 |
| Cow position: | chr18:19540086-19539855 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 94, 21 |
| Conread position: | 45-464 |
| Cow position: | chr18:47719780-47719369 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 74 |
| Conread position: | 46-464 |
| Cow position: | chr18:43200854-43201269 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 16 |
| Conread position: | 49-464 |
| Cow position: | chr18:2019893-2019470 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 69 |
| Conread position: | 59-432 |
| Cow position: | chr18:9186962-9186591 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 58 |
| Conread position: | 77-464 |
| Cow position: | chr18:53785660-53786054 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 40 |
| Conread position: | 80-464 |
| Cow position: | chr18:51689449-51689839 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 38 |
| Conread position: | 85-464 |
| Cow position: | chr18:29236646-29237023 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 7 |
| Conread position: | 132-300 |
| Cow position: | chr18:22869631-22869801 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 132-432 |
| Cow position: | chr18:54044825-54044531 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 106 |
| Conread position: | 132-464 |
| Cow position: | chr18:51341562-51341901 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 174 |
Show alignments to all cow chromosomes.