Cow genome map

Conread name: rche24_n1.y1

Conread position: 1-377
Cow position: chr2:5519798-5519419 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 16

Conread position: 1-464
Cow position: chr2:26920888-26921357 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 16

Conread position: 1-464
Cow position: chr2:51991338-51990869 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 16

Conread position: 1-464
Cow position: chr2:57142495-57142025 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 16

Conread position: 3-464
Cow position: chr2:2413606-2413135 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 27

Conread position: 3-464
Cow position: chr2:47039217-47038751 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 27

Conread position: 8-464
Cow position: chr2:59414484-59414019 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 111

Conread position: 9-464
Cow position: chr2:20903926-20903489 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 46

Conread position: 12-465
Cow position: chr2:2357250-2356812 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 33

Conread position: 13-464
Cow position: chr2:5871122-5870687 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 32

Conread position: 13-464
Cow position: chr2:80516277-80516732 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 330
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 211, 32

Conread position: 17-432
Cow position: chr2:49603937-49604339 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 284
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 25, 43

Conread position: 17-464
Cow position: chr2:39420799-39421239 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 37

Conread position: 22-458
Cow position: chr2:15580766-15580330 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 296
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 96, 33

Conread position: 25-248
Cow position: chr2:54736838-54737064 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 159
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 122, 26

Conread position: 25-459
Cow position: chr2:9907128-9907569 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 26

Conread position: 25-460
Cow position: chr2:44090514-44090957 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 26

Conread position: 25-464
Cow position: chr2:213016-212558 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 296

Conread position: 25-464
Cow position: chr2:25031260-25030814 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 26

Conread position: 25-464
Cow position: chr2:26865331-26864894 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 95

Conread position: 28-264
Cow position: chr2:24921565-24921802 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 176
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 119, 31

Conread position: 28-321
Cow position: chr2:45214037-45213743 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 31

Conread position: 30-454
Cow position: chr2:32654571-32654986 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 30

Conread position: 30-464
Cow position: chr2:85356548-85356110 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 30

Conread position: 32-341
Cow position: chr2:5481412-5481109 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 19

Conread position: 32-464
Cow position: chr2:14560419-14560847 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 19

Conread position: 32-464
Cow position: chr2:44345936-44346377 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 28

Conread position: 33-367
Cow position: chr2:1491200-1490870 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 84

Conread position: 33-462
Cow position: chr2:72922607-72922172 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 84

Conread position: 34-463
Cow position: chr2:28621600-28621167 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 43

Conread position: 35-378
Cow position: chr2:32388794-32389127 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 16

Conread position: 35-464
Cow position: chr2:32458782-32458348 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 16

Conread position: 35-464
Cow position: chr2:54649572-54649161 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 308
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 114, 27

Conread position: 36-270
Cow position: chr2:37790920-37790690 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 163
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 173, 23

Conread position: 36-379
Cow position: chr2:47604568-47604239 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 243
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 187, 23

Conread position: 36-461
Cow position: chr2:6877721-6878136 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 23

Conread position: 37-370
Cow position: chr2:25888976-25888644 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 16

Conread position: 37-464
Cow position: chr2:49471474-49471908 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 16

Conread position: 37-464
Cow position: chr2:78741363-78741791 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 22

Conread position: 37-464
Cow position: chr2:82166845-82167270 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 22

Conread position: 38-258
Cow position: chr2:27817004-27817227 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 160
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 108, 21

Conread position: 38-269
Cow position: chr2:36031829-36031609 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 164
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 45, 0

Conread position: 38-377
Cow position: chr2:67421615-67421276 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 80

Conread position: 38-399
Cow position: chr2:12224921-12224556 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 13

Conread position: 38-424
Cow position: chr2:1647389-1647779 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 258
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 28, 16

Conread position: 38-430
Cow position: chr2:11703388-11703764 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 255
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 184, 24

Conread position: 38-464
Cow position: chr2:176303-175867 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 21

Conread position: 38-464
Cow position: chr2:422295-422728 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 25

Conread position: 38-464
Cow position: chr2:2185029-2184595 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 21

Conread position: 38-464
Cow position: chr2:3325339-3324903 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 21

Conread position: 38-464
Cow position: chr2:10844108-10843689 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 13

Conread position: 38-464
Cow position: chr2:16077069-16076634 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 79

Conread position: 38-464
Cow position: chr2:16288483-16288887 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 13

Conread position: 38-464
Cow position: chr2:41656316-41656744 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 21

Conread position: 38-464
Cow position: chr2:41685741-41686177 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 13

Conread position: 38-464
Cow position: chr2:44992052-44991620 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 13

Conread position: 38-464
Cow position: chr2:52152624-52152202 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 13

Conread position: 38-464
Cow position: chr2:52615699-52616134 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 13

Conread position: 38-464
Cow position: chr2:52655701-52656127 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 13

Conread position: 38-464
Cow position: chr2:57334432-57334858 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 13

Conread position: 39-464
Cow position: chr2:2380357-2380772 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 12

Conread position: 40-275
Cow position: chr2:51305674-51305440 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 179
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 183, 11

Conread position: 40-419
Cow position: chr2:782506-782142 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 11

Conread position: 40-432
Cow position: chr2:4235408-4235785 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 265
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 112, 11

Conread position: 40-459
Cow position: chr2:3729963-3730382 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 77

Conread position: 40-464
Cow position: chr2:202421-201998 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 11

Conread position: 40-464
Cow position: chr2:5905617-5905200 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 27

Conread position: 40-464
Cow position: chr2:42334039-42333630 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 294
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 85, 77

Conread position: 41-464
Cow position: chr2:1673416-1673006 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 18

Conread position: 41-464
Cow position: chr2:41171918-41172339 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 24

Conread position: 42-432
Cow position: chr2:769159-768772 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 77

Conread position: 43-415
Cow position: chr2:10733603-10733235 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 12

Conread position: 43-421
Cow position: chr2:41149279-41149654 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 40

Conread position: 43-459
Cow position: chr2:78761710-78762129 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 22

Conread position: 43-464
Cow position: chr2:11969530-11969108 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 13

Conread position: 43-464
Cow position: chr2:44935847-44935426 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 75

Conread position: 45-464
Cow position: chr2:6772926-6772510 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 15

Conread position: 46-424
Cow position: chr2:52680665-52681037 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 248
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 46, 13

Conread position: 46-463
Cow position: chr2:46945909-46946328 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 386, 13

Conread position: 46-464
Cow position: chr2:2102225-2101809 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 19

Conread position: 48-273
Cow position: chr2:75251000-75251221 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 171
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 176, 11

Conread position: 53-464
Cow position: chr2:10712189-10711775 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 66

Conread position: 62-464
Cow position: chr2:34565676-34565268 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 56

Conread position: 66-464
Cow position: chr2:4405093-4404686 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 52

Conread position: 89-464
Cow position: chr2:7210983-7211361 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 28

Conread position: 90-464
Cow position: chr2:26868555-26868929 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 27

Conread position: 116-402
Cow position: chr2:40245363-40245649 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 69

Conread position: 117-432
Cow position: chr2:61130981-61130691 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 226
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 42, 25

Conread position: 117-463
Cow position: chr2:45921937-45921599 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 240
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 48, 29

Conread position: 131-464
Cow position: chr2:36979702-36980036 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 66

Conread position: 132-464
Cow position: chr2:28792569-28792912 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 176

Conread position: 141-463
Cow position: chr2:53473825-53473497 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 166

Conread position: 176-464
Cow position: chr2:15578204-15577901 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 222
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 47, 116

Conread position: 227-464
Cow position: chr2:14821931-14822162 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 190
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 138, 9

Conread position: 237-464
Cow position: chr2:39621723-39621950 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 62

Conread position: 306-464
Cow position: chr2:10612130-10611965 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 50, 0

Show alignments to all cow chromosomes.