Cow genome map
| Conread name: | rche24_n1.y1 |
| Conread position: | 1-316 |
| Cow position: | chr29:31121471-31121784 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 32, 16 |
| Conread position: | 1-457 |
| Cow position: | chr29:15895185-15894725 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 1-464 |
| Cow position: | chr29:16109398-16109859 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 22 |
| Conread position: | 7-464 |
| Cow position: | chr29:15969485-15969019 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 57 |
| Conread position: | 12-464 |
| Cow position: | chr29:15950505-15950059 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 41 |
| Conread position: | 17-464 |
| Cow position: | chr29:32315718-32316173 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 42 |
| Conread position: | 22-458 |
| Cow position: | chr29:13853334-13852898 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 10 |
| Conread position: | 24-462 |
| Cow position: | chr29:7840477-7840927 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 97 |
| Conread position: | 25-426 |
| Cow position: | chr29:31180809-31181212 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 26 |
| Conread position: | 28-464 |
| Cow position: | chr29:2841675-2841241 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 31 |
| Conread position: | 28-464 |
| Cow position: | chr29:6266802-6266369 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 31 |
| Conread position: | 28-464 |
| Cow position: | chr29:23975522-23975972 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 31 |
| Conread position: | 30-464 |
| Cow position: | chr29:2750693-2750285 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 33-464 |
| Cow position: | chr29:5957298-5957736 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 26 |
| Conread position: | 35-432 |
| Cow position: | chr29:21427358-21426964 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 24 |
| Conread position: | 35-464 |
| Cow position: | chr29:21543680-21543237 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 82 |
| Conread position: | 36-256 |
| Cow position: | chr29:9644024-9643802 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 109, 23 |
| Conread position: | 36-464 |
| Cow position: | chr29:11048981-11049410 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 23 |
| Conread position: | 38-307 |
| Cow position: | chr29:12796765-12796503 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 9, 22 |
| Conread position: | 38-418 |
| Cow position: | chr29:10848418-10848028 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 57 |
| Conread position: | 38-448 |
| Cow position: | chr29:28060967-28060548 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 21 |
| Conread position: | 38-451 |
| Cow position: | chr29:30108802-30109220 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 280 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 104, 25 |
| Conread position: | 38-464 |
| Cow position: | chr29:610913-610480 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 80 |
| Conread position: | 38-464 |
| Cow position: | chr29:2099542-2099977 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 80 |
| Conread position: | 38-464 |
| Cow position: | chr29:16769830-16770255 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 79 |
| Conread position: | 38-464 |
| Cow position: | chr29:19623545-19623115 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 16 |
| Conread position: | 38-464 |
| Cow position: | chr29:19652807-19653240 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 13 |
| Conread position: | 38-464 |
| Cow position: | chr29:26165123-26164690 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 13 |
| Conread position: | 38-464 |
| Cow position: | chr29:35296576-35297006 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 68 |
| Conread position: | 39-464 |
| Cow position: | chr29:14073239-14072815 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 287 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 108, 23 |
| Conread position: | 41-431 |
| Cow position: | chr29:39313888-39313498 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 98, 10 |
| Conread position: | 41-465 |
| Cow position: | chr29:27250634-27250209 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 77 |
| Conread position: | 43-462 |
| Cow position: | chr29:43366292-43365862 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 8 |
| Conread position: | 43-464 |
| Cow position: | chr29:27041056-27040637 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 8 |
| Conread position: | 44-465 |
| Cow position: | chr29:35196380-35196800 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 137 |
| Conread position: | 45-361 |
| Cow position: | chr29:34609241-34608927 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 17, 69 |
| Conread position: | 46-464 |
| Cow position: | chr29:104285-104699 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 73 |
| Conread position: | 53-464 |
| Cow position: | chr29:30811248-30811660 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 12 |
| Conread position: | 54-255 |
| Cow position: | chr29:42801901-42802100 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 88, 25 |
| Conread position: | 80-321 |
| Cow position: | chr29:17662661-17662910 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 60, 37 |
| Conread position: | 155-464 |
| Cow position: | chr29:19884887-19885202 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 150 |
| Conread position: | 170-464 |
| Cow position: | chr29:27981085-27980785 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 125 |
| Conread position: | 183-424 |
| Cow position: | chr29:5983334-5983094 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 53 |
| Conread position: | 205-464 |
| Cow position: | chr29:670189-669925 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 106 |
Show alignments to all cow chromosomes.