Cow genome map

Conread name: rche24_n1.y1

Conread position: 1-209
Cow position: chr3:7168185-7168393 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 146
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 150, 52

Conread position: 1-394
Cow position: chr3:72704778-72705172 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 16

Conread position: 1-419
Cow position: chr3:4285469-4285885 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 16

Conread position: 1-448
Cow position: chr3:19943639-19944086 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 95

Conread position: 1-464
Cow position: chr3:24314059-24314519 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 16

Conread position: 1-464
Cow position: chr3:32146504-32146040 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 16

Conread position: 1-464
Cow position: chr3:47082086-47081608 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 124

Conread position: 1-464
Cow position: chr3:47179623-47179153 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 16

Conread position: 1-464
Cow position: chr3:49614392-49613927 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 16

Conread position: 1-464
Cow position: chr3:57856317-57856787 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 16

Conread position: 2-463
Cow position: chr3:32842850-32842399 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 316
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 114, 52

Conread position: 2-464
Cow position: chr3:7159161-7158683 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 12

Conread position: 2-464
Cow position: chr3:66891379-66890913 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 28

Conread position: 7-464
Cow position: chr3:2917043-2917511 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 115

Conread position: 13-464
Cow position: chr3:66119248-66119705 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 49

Conread position: 15-459
Cow position: chr3:18729538-18729096 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 16

Conread position: 15-461
Cow position: chr3:17936465-17936016 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 301
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 130, 16

Conread position: 17-464
Cow position: chr3:56320906-56321366 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 34

Conread position: 18-464
Cow position: chr3:36126982-36127441 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 104

Conread position: 19-464
Cow position: chr3:6685060-6685511 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 5

Conread position: 19-464
Cow position: chr3:55230098-55229651 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 99

Conread position: 24-464
Cow position: chr3:22335494-22335938 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 37

Conread position: 25-464
Cow position: chr3:5830026-5829578 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 27

Conread position: 25-464
Cow position: chr3:32623406-32622985 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 46

Conread position: 25-464
Cow position: chr3:50914907-50915356 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 30

Conread position: 26-454
Cow position: chr3:45985464-45985046 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 275
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 78, 69

Conread position: 26-464
Cow position: chr3:46861693-46861253 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 25

Conread position: 28-432
Cow position: chr3:56340812-56340415 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 31

Conread position: 28-464
Cow position: chr3:18542800-18542358 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 31

Conread position: 28-464
Cow position: chr3:64017756-64017314 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 31

Conread position: 30-269
Cow position: chr3:52865137-52864899 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 186
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 117, 21

Conread position: 30-432
Cow position: chr3:14634491-14634100 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 22

Conread position: 30-459
Cow position: chr3:57499904-57499479 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 38

Conread position: 30-464
Cow position: chr3:3979996-3980440 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 88

Conread position: 30-464
Cow position: chr3:42580357-42579917 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 87

Conread position: 30-464
Cow position: chr3:64358556-64358120 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 22

Conread position: 31-367
Cow position: chr3:39326300-39326631 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 85

Conread position: 31-450
Cow position: chr3:3054221-3054634 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 21

Conread position: 32-205
Cow position: chr3:14440116-14439943 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 115, 21

Conread position: 33-464
Cow position: chr3:50128262-50127830 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 26

Conread position: 34-430
Cow position: chr3:80871519-80871905 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 0

Conread position: 34-464
Cow position: chr3:15989426-15988985 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 86

Conread position: 35-464
Cow position: chr3:21945789-21945359 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 49

Conread position: 35-464
Cow position: chr3:41212124-41211687 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 16

Conread position: 36-464
Cow position: chr3:2653726-2654157 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 23

Conread position: 36-464
Cow position: chr3:58947072-58947508 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 15

Conread position: 37-463
Cow position: chr3:31354641-31354216 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 82

Conread position: 37-464
Cow position: chr3:42431849-42432281 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 22

Conread position: 37-464
Cow position: chr3:64028467-64028036 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 14

Conread position: 37-465
Cow position: chr3:26949133-26949563 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 14

Conread position: 38-193
Cow position: chr3:19802041-19802197 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 106, 21

Conread position: 38-306
Cow position: chr3:49677379-49677645 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 189
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 11, 25

Conread position: 38-332
Cow position: chr3:19938530-19938825 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 214
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 109, 13

Conread position: 38-338
Cow position: chr3:40340344-40340044 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 177
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 104, 13

Conread position: 38-427
Cow position: chr3:36117279-36117683 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 13

Conread position: 38-462
Cow position: chr3:9716428-9716862 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 13

Conread position: 38-462
Cow position: chr3:37968701-37969127 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 13

Conread position: 38-463
Cow position: chr3:77474379-77474809 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 13

Conread position: 38-464
Cow position: chr3:5047567-5047134 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 24

Conread position: 38-464
Cow position: chr3:6782007-6782434 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 13

Conread position: 38-464
Cow position: chr3:17829030-17828599 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 21

Conread position: 38-464
Cow position: chr3:19878279-19878708 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 13

Conread position: 38-464
Cow position: chr3:45032358-45032791 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 13

Conread position: 38-464
Cow position: chr3:46678296-46677864 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 13

Conread position: 38-464
Cow position: chr3:64650249-64650675 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 13

Conread position: 38-464
Cow position: chr3:70084026-70083602 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 21

Conread position: 39-427
Cow position: chr3:42630630-42631021 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 80

Conread position: 39-464
Cow position: chr3:3522632-3523071 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 12

Conread position: 40-422
Cow position: chr3:63005530-63005144 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 14

Conread position: 40-464
Cow position: chr3:54865072-54864649 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 11

Conread position: 41-279
Cow position: chr3:14588303-14588544 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 178
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 102, 12

Conread position: 43-464
Cow position: chr3:31898350-31897927 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 10

Conread position: 45-464
Cow position: chr3:472163-472582 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 17

Conread position: 46-464
Cow position: chr3:207536-207111 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 71

Conread position: 47-450
Cow position: chr3:52184609-52184189 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 266
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 86, 70

Conread position: 49-432
Cow position: chr3:3805985-3806351 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 69

Conread position: 51-464
Cow position: chr3:54783174-54783594 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 285
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 58, 36

Conread position: 57-464
Cow position: chr3:2633563-2633975 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 60

Conread position: 59-464
Cow position: chr3:18463939-18463537 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 59

Conread position: 62-464
Cow position: chr3:53410560-53410963 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 55

Conread position: 62-464
Cow position: chr3:60210536-60210123 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 69

Conread position: 79-464
Cow position: chr3:66638396-66638790 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 38

Conread position: 103-320
Cow position: chr3:2909413-2909194 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 165
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 42, 14

Conread position: 132-343
Cow position: chr3:57900927-57901139 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 160
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 10, 176

Conread position: 133-463
Cow position: chr3:17775810-17776134 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 228
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 14, 109

Conread position: 140-464
Cow position: chr3:7168516-7168843 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 160

Conread position: 271-464
Cow position: chr3:14439908-14439711 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 156
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 160, 39

Show alignments to all cow chromosomes.