Cow genome map
| Conread name: | rche24_n1.y1 |
| Conread position: | 1-221 |
| Cow position: | chr5:37755659-37755438 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 33, 8 |
| Conread position: | 1-464 |
| Cow position: | chr5:18665441-18665911 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 1-464 |
| Cow position: | chr5:24576393-24576864 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 1-464 |
| Cow position: | chr5:25207264-25206791 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 32 |
| Conread position: | 1-464 |
| Cow position: | chr5:26079739-26079269 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 16 |
| Conread position: | 1-464 |
| Cow position: | chr5:26090344-26089882 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 44 |
| Conread position: | 1-464 |
| Cow position: | chr5:31706057-31706523 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 51 |
| Conread position: | 3-409 |
| Cow position: | chr5:49101119-49101506 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 267 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 31, 60 |
| Conread position: | 3-464 |
| Cow position: | chr5:4088281-4088754 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 298 |
| Conread position: | 3-464 |
| Cow position: | chr5:45182620-45182154 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 27 |
| Conread position: | 9-209 |
| Cow position: | chr5:6519369-6519575 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 33, 116 |
| Conread position: | 9-464 |
| Cow position: | chr5:46659209-46659664 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 109 |
| Conread position: | 10-430 |
| Cow position: | chr5:46005895-46005467 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 19 |
| Conread position: | 13-464 |
| Cow position: | chr5:26769308-26769759 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 48 |
| Conread position: | 18-315 |
| Cow position: | chr5:30088228-30087927 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 27, 104 |
| Conread position: | 21-464 |
| Cow position: | chr5:27652494-27652033 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 69 |
| Conread position: | 24-464 |
| Cow position: | chr5:59060125-59060567 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 94 |
| Conread position: | 25-464 |
| Cow position: | chr5:2530770-2531220 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 26 |
| Conread position: | 25-464 |
| Cow position: | chr5:3963973-3964413 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 26 |
| Conread position: | 25-464 |
| Cow position: | chr5:14379665-14380112 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 26 |
| Conread position: | 28-464 |
| Cow position: | chr5:10918304-10918747 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 31 |
| Conread position: | 29-431 |
| Cow position: | chr5:57366503-57366112 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 75 |
| Conread position: | 30-463 |
| Cow position: | chr5:49593952-49593507 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 30 |
| Conread position: | 30-464 |
| Cow position: | chr5:41530063-41529644 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 31-295 |
| Cow position: | chr5:76124043-76123776 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 11, 22 |
| Conread position: | 31-412 |
| Cow position: | chr5:23227769-23228147 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 48 |
| Conread position: | 32-367 |
| Cow position: | chr5:27569666-27570000 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 19 |
| Conread position: | 35-464 |
| Cow position: | chr5:32733732-32733303 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 24 |
| Conread position: | 35-464 |
| Cow position: | chr5:41551412-41550978 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 16 |
| Conread position: | 36-462 |
| Cow position: | chr5:24329811-24330221 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 82 |
| Conread position: | 37-460 |
| Cow position: | chr5:41359219-41358795 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 106, 81 |
| Conread position: | 37-464 |
| Cow position: | chr5:32945395-32945823 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 14 |
| Conread position: | 38-200 |
| Cow position: | chr5:52804850-52805016 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 101, 21 |
| Conread position: | 38-280 |
| Cow position: | chr5:23716429-23716189 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 105, 13 |
| Conread position: | 38-290 |
| Cow position: | chr5:35299579-35299834 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 13 |
| Conread position: | 38-316 |
| Cow position: | chr5:59144297-59144575 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 109, 21 |
| Conread position: | 38-361 |
| Cow position: | chr5:45699796-45700124 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 13 |
| Conread position: | 38-414 |
| Cow position: | chr5:10844359-10843981 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 13 |
| Conread position: | 38-427 |
| Cow position: | chr5:53714772-53715160 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 21 |
| Conread position: | 38-454 |
| Cow position: | chr5:54932702-54932279 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 21 |
| Conread position: | 38-459 |
| Cow position: | chr5:4019683-4019254 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 13 |
| Conread position: | 38-464 |
| Cow position: | chr5:10776737-10776315 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 13 |
| Conread position: | 38-464 |
| Cow position: | chr5:27909752-27909323 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 13 |
| Conread position: | 38-464 |
| Cow position: | chr5:29008877-29009304 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 13 |
| Conread position: | 38-464 |
| Cow position: | chr5:29042027-29042460 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 21 |
| Conread position: | 38-464 |
| Cow position: | chr5:32771997-32772431 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 13 |
| Conread position: | 38-464 |
| Cow position: | chr5:34202463-34202884 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 38-464 |
| Cow position: | chr5:39165282-39164851 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 77 |
| Conread position: | 38-464 |
| Cow position: | chr5:46630909-46630492 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 21 |
| Conread position: | 38-464 |
| Cow position: | chr5:48468759-48468330 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 21 |
| Conread position: | 38-464 |
| Cow position: | chr5:58195517-58195951 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 80 |
| Conread position: | 39-432 |
| Cow position: | chr5:6188087-6188472 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 264 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 11, 80 |
| Conread position: | 39-432 |
| Cow position: | chr5:61020325-61019933 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 50, 79 |
| Conread position: | 39-464 |
| Cow position: | chr5:46775601-46776029 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 79 |
| Conread position: | 40-320 |
| Cow position: | chr5:12681990-12681706 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 183, 19 |
| Conread position: | 40-464 |
| Cow position: | chr5:44459000-44459432 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 19 |
| Conread position: | 40-464 |
| Cow position: | chr5:49181797-49182218 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 79 |
| Conread position: | 41-432 |
| Cow position: | chr5:32674219-32673832 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 24 |
| Conread position: | 41-464 |
| Cow position: | chr5:46663516-46663952 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 80 |
| Conread position: | 43-464 |
| Cow position: | chr5:61273647-61273238 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 8 |
| Conread position: | 48-463 |
| Cow position: | chr5:47831578-47831163 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 22 |
| Conread position: | 53-464 |
| Cow position: | chr5:28031014-28031426 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 65 |
| Conread position: | 55-464 |
| Cow position: | chr5:9686882-9686479 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 62 |
| Conread position: | 56-461 |
| Cow position: | chr5:26507975-26508386 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 33, 63 |
| Conread position: | 59-432 |
| Cow position: | chr5:27683222-27682859 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 44 |
| Conread position: | 109-305 |
| Cow position: | chr5:23767884-23768078 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 36, 9 |
| Conread position: | 118-464 |
| Cow position: | chr5:28006803-28007149 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 24 |
| Conread position: | 131-359 |
| Cow position: | chr5:18653614-18653844 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 13, 141 |
| Conread position: | 135-464 |
| Cow position: | chr5:6589408-6589072 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 161 |
| Conread position: | 138-432 |
| Cow position: | chr5:41933199-41932911 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 7, 101 |
| Conread position: | 143-464 |
| Cow position: | chr5:41962612-41962289 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 66 |
| Conread position: | 176-464 |
| Cow position: | chr5:26069058-26068773 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 211 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 48, 122 |
| Conread position: | 279-464 |
| Cow position: | chr5:52805126-52805315 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 155, 31 |
| Conread position: | 295-464 |
| Cow position: | chr5:39247610-39247434 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 12, 124 |
Show alignments to all cow chromosomes.