Cow genome map

Conread name: rche24_n1.y1

Conread position: 1-274
Cow position: chr6:40274881-40275155 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 196
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 33, 16

Conread position: 1-429
Cow position: chr6:26671236-26670814 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 16

Conread position: 1-460
Cow position: chr6:2554329-2554793 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 16

Conread position: 1-464
Cow position: chr6:65880488-65880958 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 58

Conread position: 2-464
Cow position: chr6:58409285-58408821 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 14

Conread position: 7-464
Cow position: chr6:17598647-17598188 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 16

Conread position: 10-464
Cow position: chr6:65822495-65822035 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 12

Conread position: 12-464
Cow position: chr6:1405604-1405147 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 41

Conread position: 12-464
Cow position: chr6:44150928-44150465 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 44

Conread position: 13-292
Cow position: chr6:65007479-65007748 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 203
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 210, 39

Conread position: 13-464
Cow position: chr6:331836-331377 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 107

Conread position: 22-436
Cow position: chr6:42927029-42927440 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 29

Conread position: 24-203
Cow position: chr6:2401896-2402074 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 120, 35

Conread position: 24-464
Cow position: chr6:28062985-28063427 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 27

Conread position: 25-292
Cow position: chr6:39907794-39908064 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 202
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 100, 26

Conread position: 25-300
Cow position: chr6:45671907-45672187 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 26

Conread position: 25-449
Cow position: chr6:7141828-7141401 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 93

Conread position: 27-326
Cow position: chr6:40314549-40314849 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 217
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 35, 5

Conread position: 28-463
Cow position: chr6:701602-702045 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 31

Conread position: 28-464
Cow position: chr6:6566261-6566696 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 31

Conread position: 30-460
Cow position: chr6:33388484-33388917 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 85

Conread position: 31-315
Cow position: chr6:6476803-6476517 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 46

Conread position: 31-333
Cow position: chr6:10054264-10054567 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 83

Conread position: 31-464
Cow position: chr6:11278046-11277605 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 29

Conread position: 33-278
Cow position: chr6:63198485-63198243 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 171
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 193, 26

Conread position: 33-382
Cow position: chr6:65900258-65899918 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 236
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 191, 89

Conread position: 35-464
Cow position: chr6:65841245-65841675 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 17

Conread position: 36-461
Cow position: chr6:41552681-41553104 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 295
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 13, 83

Conread position: 38-269
Cow position: chr6:12093197-12092971 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 165
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 185, 24

Conread position: 38-427
Cow position: chr6:68362657-68362274 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 13

Conread position: 38-451
Cow position: chr6:42723262-42722849 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 21

Conread position: 38-464
Cow position: chr6:13103716-13104149 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 13

Conread position: 38-464
Cow position: chr6:13943571-13944000 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 80

Conread position: 38-464
Cow position: chr6:19453586-19454007 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 14

Conread position: 38-464
Cow position: chr6:27169234-27169668 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 21

Conread position: 38-464
Cow position: chr6:28491856-28491423 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 13

Conread position: 38-464
Cow position: chr6:34127009-34127444 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 21

Conread position: 38-464
Cow position: chr6:43617374-43617806 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 21

Conread position: 38-464
Cow position: chr6:44028708-44029134 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 13

Conread position: 38-464
Cow position: chr6:57870346-57869912 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 13

Conread position: 38-464
Cow position: chr6:68026439-68026883 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 80

Conread position: 39-309
Cow position: chr6:42564604-42564874 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 187
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 108, 14

Conread position: 39-464
Cow position: chr6:65927598-65928027 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 20

Conread position: 40-464
Cow position: chr6:38231932-38232368 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 31

Conread position: 40-464
Cow position: chr6:59919622-59919194 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 81

Conread position: 41-464
Cow position: chr6:30478760-30479190 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 10

Conread position: 42-465
Cow position: chr6:35420908-35420512 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 17

Conread position: 43-338
Cow position: chr6:65909089-65909383 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 210
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 104, 18

Conread position: 43-464
Cow position: chr6:37115797-37116230 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 76

Conread position: 43-464
Cow position: chr6:66231471-66231884 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 296
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 5, 79

Conread position: 57-458
Cow position: chr6:525920-526323 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 265
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 15, 53

Conread position: 59-415
Cow position: chr6:2885900-2886244 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 252
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 5, 56

Conread position: 62-464
Cow position: chr6:10558961-10558569 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 42

Conread position: 63-343
Cow position: chr6:42359998-42359716 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 192
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 86, 39

Conread position: 89-464
Cow position: chr6:13317776-13317398 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 29

Conread position: 105-464
Cow position: chr6:49520667-49520289 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 12

Conread position: 122-464
Cow position: chr6:33459606-33459954 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 187

Conread position: 130-464
Cow position: chr6:13276550-13276891 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 181

Conread position: 133-451
Cow position: chr6:57010104-57009788 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 217
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 87, 63

Conread position: 134-464
Cow position: chr6:16051641-16051971 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 145

Conread position: 138-419
Cow position: chr6:48368152-48368429 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 196
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 7, 100

Conread position: 138-464
Cow position: chr6:13846806-13847126 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 236
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 16, 168

Conread position: 161-286
Cow position: chr6:28588629-28588503 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 96
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 62, 0

Conread position: 179-464
Cow position: chr6:43793957-43793678 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 206
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 253, 70

Conread position: 339-464
Cow position: chr6:65910746-65910878 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 26, 0

Show alignments to all cow chromosomes.