Cow genome map
| Conread name: | rche24_n1.y1 |
| Conread position: | 1-274 |
| Cow position: | chr6:40274881-40275155 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 1-429 |
| Cow position: | chr6:26671236-26670814 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 16 |
| Conread position: | 1-460 |
| Cow position: | chr6:2554329-2554793 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 1-464 |
| Cow position: | chr6:65880488-65880958 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 58 |
| Conread position: | 2-464 |
| Cow position: | chr6:58409285-58408821 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 14 |
| Conread position: | 7-464 |
| Cow position: | chr6:17598647-17598188 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 16 |
| Conread position: | 10-464 |
| Cow position: | chr6:65822495-65822035 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 12 |
| Conread position: | 12-464 |
| Cow position: | chr6:1405604-1405147 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 41 |
| Conread position: | 12-464 |
| Cow position: | chr6:44150928-44150465 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 44 |
| Conread position: | 13-292 |
| Cow position: | chr6:65007479-65007748 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 203 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 210, 39 |
| Conread position: | 13-464 |
| Cow position: | chr6:331836-331377 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 107 |
| Conread position: | 22-436 |
| Cow position: | chr6:42927029-42927440 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 29 |
| Conread position: | 24-203 |
| Cow position: | chr6:2401896-2402074 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 120, 35 |
| Conread position: | 24-464 |
| Cow position: | chr6:28062985-28063427 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 27 |
| Conread position: | 25-292 |
| Cow position: | chr6:39907794-39908064 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 202 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 100, 26 |
| Conread position: | 25-300 |
| Cow position: | chr6:45671907-45672187 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 26 |
| Conread position: | 25-449 |
| Cow position: | chr6:7141828-7141401 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 93 |
| Conread position: | 27-326 |
| Cow position: | chr6:40314549-40314849 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 35, 5 |
| Conread position: | 28-463 |
| Cow position: | chr6:701602-702045 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 31 |
| Conread position: | 28-464 |
| Cow position: | chr6:6566261-6566696 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 31 |
| Conread position: | 30-460 |
| Cow position: | chr6:33388484-33388917 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 85 |
| Conread position: | 31-315 |
| Cow position: | chr6:6476803-6476517 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 46 |
| Conread position: | 31-333 |
| Cow position: | chr6:10054264-10054567 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 83 |
| Conread position: | 31-464 |
| Cow position: | chr6:11278046-11277605 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 29 |
| Conread position: | 33-278 |
| Cow position: | chr6:63198485-63198243 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 193, 26 |
| Conread position: | 33-382 |
| Cow position: | chr6:65900258-65899918 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 191, 89 |
| Conread position: | 35-464 |
| Cow position: | chr6:65841245-65841675 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 17 |
| Conread position: | 36-461 |
| Cow position: | chr6:41552681-41553104 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 295 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 13, 83 |
| Conread position: | 38-269 |
| Cow position: | chr6:12093197-12092971 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 185, 24 |
| Conread position: | 38-427 |
| Cow position: | chr6:68362657-68362274 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 13 |
| Conread position: | 38-451 |
| Cow position: | chr6:42723262-42722849 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 21 |
| Conread position: | 38-464 |
| Cow position: | chr6:13103716-13104149 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 13 |
| Conread position: | 38-464 |
| Cow position: | chr6:13943571-13944000 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 80 |
| Conread position: | 38-464 |
| Cow position: | chr6:19453586-19454007 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 14 |
| Conread position: | 38-464 |
| Cow position: | chr6:27169234-27169668 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 21 |
| Conread position: | 38-464 |
| Cow position: | chr6:28491856-28491423 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 13 |
| Conread position: | 38-464 |
| Cow position: | chr6:34127009-34127444 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 21 |
| Conread position: | 38-464 |
| Cow position: | chr6:43617374-43617806 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 21 |
| Conread position: | 38-464 |
| Cow position: | chr6:44028708-44029134 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 13 |
| Conread position: | 38-464 |
| Cow position: | chr6:57870346-57869912 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 13 |
| Conread position: | 38-464 |
| Cow position: | chr6:68026439-68026883 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 80 |
| Conread position: | 39-309 |
| Cow position: | chr6:42564604-42564874 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 108, 14 |
| Conread position: | 39-464 |
| Cow position: | chr6:65927598-65928027 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 20 |
| Conread position: | 40-464 |
| Cow position: | chr6:38231932-38232368 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 31 |
| Conread position: | 40-464 |
| Cow position: | chr6:59919622-59919194 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 81 |
| Conread position: | 41-464 |
| Cow position: | chr6:30478760-30479190 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 10 |
| Conread position: | 42-465 |
| Cow position: | chr6:35420908-35420512 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 17 |
| Conread position: | 43-338 |
| Cow position: | chr6:65909089-65909383 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 43-464 |
| Cow position: | chr6:37115797-37116230 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 76 |
| Conread position: | 43-464 |
| Cow position: | chr6:66231471-66231884 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 296 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 5, 79 |
| Conread position: | 57-458 |
| Cow position: | chr6:525920-526323 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 15, 53 |
| Conread position: | 59-415 |
| Cow position: | chr6:2885900-2886244 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 5, 56 |
| Conread position: | 62-464 |
| Cow position: | chr6:10558961-10558569 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 42 |
| Conread position: | 63-343 |
| Cow position: | chr6:42359998-42359716 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 86, 39 |
| Conread position: | 89-464 |
| Cow position: | chr6:13317776-13317398 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 29 |
| Conread position: | 105-464 |
| Cow position: | chr6:49520667-49520289 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 12 |
| Conread position: | 122-464 |
| Cow position: | chr6:33459606-33459954 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 187 |
| Conread position: | 130-464 |
| Cow position: | chr6:13276550-13276891 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 181 |
| Conread position: | 133-451 |
| Cow position: | chr6:57010104-57009788 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 87, 63 |
| Conread position: | 134-464 |
| Cow position: | chr6:16051641-16051971 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 145 |
| Conread position: | 138-419 |
| Cow position: | chr6:48368152-48368429 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 7, 100 |
| Conread position: | 138-464 |
| Cow position: | chr6:13846806-13847126 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 236 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 16, 168 |
| Conread position: | 161-286 |
| Cow position: | chr6:28588629-28588503 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 179-464 |
| Cow position: | chr6:43793957-43793678 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 253, 70 |
| Conread position: | 339-464 |
| Cow position: | chr6:65910746-65910878 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
Show alignments to all cow chromosomes.