Cow genome map
| Conread name: | rche24_n1.y1 |
| Conread position: | 1-274 |
| Cow position: | chr8:32439542-32439270 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 1-464 |
| Cow position: | chr8:1318947-1319413 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 58 |
| Conread position: | 1-464 |
| Cow position: | chr8:9274921-9275379 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 1-464 |
| Cow position: | chr8:11821213-11821681 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 59 |
| Conread position: | 1-464 |
| Cow position: | chr8:27578309-27578770 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 1-464 |
| Cow position: | chr8:32930411-32930878 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 33 |
| Conread position: | 2-464 |
| Cow position: | chr8:1154408-1153939 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 2-464 |
| Cow position: | chr8:8656315-8655850 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 2-464 |
| Cow position: | chr8:46091959-46091496 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 15 |
| Conread position: | 7-464 |
| Cow position: | chr8:47069897-47069437 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 17 |
| Conread position: | 12-221 |
| Cow position: | chr8:37657355-37657151 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 130, 12 |
| Conread position: | 12-464 |
| Cow position: | chr8:45189000-45189452 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 13-464 |
| Cow position: | chr8:47884941-47885402 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 30 |
| Conread position: | 16-463 |
| Cow position: | chr8:24876789-24876346 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 309 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 131, 37 |
| Conread position: | 17-464 |
| Cow position: | chr8:9735160-9735615 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 44 |
| Conread position: | 18-444 |
| Cow position: | chr8:11055789-11056203 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 32, 61 |
| Conread position: | 18-465 |
| Cow position: | chr8:25407361-25407814 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 35 |
| Conread position: | 24-464 |
| Cow position: | chr8:2885666-2886119 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 27 |
| Conread position: | 25-272 |
| Cow position: | chr8:26006847-26006595 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 38, 94 |
| Conread position: | 25-464 |
| Cow position: | chr8:8518658-8518214 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 26 |
| Conread position: | 25-464 |
| Cow position: | chr8:8557214-8556780 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 26 |
| Conread position: | 25-464 |
| Cow position: | chr8:10748300-10748743 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 94 |
| Conread position: | 27-343 |
| Cow position: | chr8:12664092-12663777 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 197, 18 |
| Conread position: | 28-315 |
| Cow position: | chr8:29440901-29440612 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 118, 31 |
| Conread position: | 28-464 |
| Cow position: | chr8:2171453-2171011 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 31 |
| Conread position: | 28-464 |
| Cow position: | chr8:4686321-4686761 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 31 |
| Conread position: | 28-464 |
| Cow position: | chr8:8229858-8229413 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 31 |
| Conread position: | 31-464 |
| Cow position: | chr8:9540561-9540125 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 23 |
| Conread position: | 31-464 |
| Cow position: | chr8:33429843-33430291 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 87 |
| Conread position: | 31-464 |
| Cow position: | chr8:38607576-38607156 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 28 |
| Conread position: | 31-464 |
| Cow position: | chr8:45448379-45448825 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 21 |
| Conread position: | 32-169 |
| Cow position: | chr8:8595965-8595826 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 110, 19 |
| Conread position: | 33-464 |
| Cow position: | chr8:24916406-24915969 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 26 |
| Conread position: | 36-430 |
| Cow position: | chr8:27378086-27378471 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 54, 17 |
| Conread position: | 36-464 |
| Cow position: | chr8:47670391-47670828 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 15 |
| Conread position: | 36-465 |
| Cow position: | chr8:8316696-8316273 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 60 |
| Conread position: | 37-404 |
| Cow position: | chr8:44077085-44076738 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 81 |
| Conread position: | 37-464 |
| Cow position: | chr8:44036834-44036411 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 30 |
| Conread position: | 38-262 |
| Cow position: | chr8:37931231-37931456 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 114, 13 |
| Conread position: | 38-432 |
| Cow position: | chr8:36636607-36636212 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 21 |
| Conread position: | 38-432 |
| Cow position: | chr8:36637722-36637327 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 21 |
| Conread position: | 38-464 |
| Cow position: | chr8:22572361-22571927 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 79 |
| Conread position: | 38-464 |
| Cow position: | chr8:23216690-23217128 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 13 |
| Conread position: | 38-464 |
| Cow position: | chr8:27983864-27983427 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 78 |
| Conread position: | 38-464 |
| Cow position: | chr8:45317187-45316757 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 13 |
| Conread position: | 39-313 |
| Cow position: | chr8:8904577-8904312 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 114, 12 |
| Conread position: | 40-321 |
| Cow position: | chr8:11757652-11757923 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 183, 11 |
| Conread position: | 40-431 |
| Cow position: | chr8:30490801-30490411 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 274 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 32, 41 |
| Conread position: | 40-464 |
| Cow position: | chr8:13735590-13736013 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 11 |
| Conread position: | 41-464 |
| Cow position: | chr8:11970624-11970223 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 10 |
| Conread position: | 42-464 |
| Cow position: | chr8:45161420-45161007 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 9 |
| Conread position: | 43-462 |
| Cow position: | chr8:53427265-53427687 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 11 |
| Conread position: | 45-194 |
| Cow position: | chr8:27925067-27925216 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 107, 17 |
| Conread position: | 45-464 |
| Cow position: | chr8:47074211-47074637 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 20 |
| Conread position: | 53-464 |
| Cow position: | chr8:61035413-61035000 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 12 |
| Conread position: | 55-462 |
| Cow position: | chr8:42165267-42164871 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 7, 65 |
| Conread position: | 69-345 |
| Cow position: | chr8:44713343-44713059 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 80, 45 |
| Conread position: | 89-464 |
| Cow position: | chr8:24420544-24420165 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 132 |
| Conread position: | 92-330 |
| Cow position: | chr8:36292158-36292397 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 25 |
| Conread position: | 118-302 |
| Cow position: | chr8:44121895-44122080 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 24, 132 |
| Conread position: | 118-368 |
| Cow position: | chr8:51668240-51668002 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 108, 14 |
| Conread position: | 131-463 |
| Cow position: | chr8:13808631-13808968 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 17, 11 |
| Conread position: | 137-464 |
| Cow position: | chr8:50934157-50934469 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 5, 71 |
| Conread position: | 154-463 |
| Cow position: | chr8:11761355-11761647 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 259, 88 |
| Conread position: | 156-425 |
| Cow position: | chr8:29581996-29582268 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 139 |
| Conread position: | 156-458 |
| Cow position: | chr8:45693571-45693267 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 219 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 59, 82 |
| Conread position: | 160-366 |
| Cow position: | chr8:8533759-8533551 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 62, 147 |
| Conread position: | 160-464 |
| Cow position: | chr8:42161662-42161358 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 228 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 64, 147 |
| Conread position: | 161-464 |
| Cow position: | chr8:61067180-61066878 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 156 |
| Conread position: | 163-321 |
| Cow position: | chr8:42759025-42759186 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 232-464 |
| Cow position: | chr8:6065637-6065400 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 78 |
| Conread position: | 242-464 |
| Cow position: | chr8:21158676-21158450 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 12, 69 |
| Conread position: | 272-464 |
| Cow position: | chr8:25542674-25542870 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 162, 9 |
| Conread position: | 305-464 |
| Cow position: | chr8:12543832-12543673 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 129, 19 |
Show alignments to all cow chromosomes.