Cow genome map
| Conread name: | rche24_n1.y1 |
| Conread position: | 1-449 |
| Cow position: | chr9:131642-131194 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 31 |
| Conread position: | 1-464 |
| Cow position: | chr9:163939-163483 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 1-464 |
| Cow position: | chr9:1076646-1076177 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 16 |
| Conread position: | 1-464 |
| Cow position: | chr9:2500744-2500274 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 52 |
| Conread position: | 1-464 |
| Cow position: | chr9:16267911-16268392 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 1-464 |
| Cow position: | chr9:25483423-25483894 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 1-464 |
| Cow position: | chr9:36724054-36724522 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 16 |
| Conread position: | 18-451 |
| Cow position: | chr9:2052011-2052451 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 299 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 20, 104 |
| Conread position: | 18-451 |
| Cow position: | chr9:2202770-2203205 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 300 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 23, 104 |
| Conread position: | 18-463 |
| Cow position: | chr9:3024664-3025123 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 306 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 111 |
| Conread position: | 18-464 |
| Cow position: | chr9:12845975-12845530 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 310 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 9, 101 |
| Conread position: | 22-293 |
| Cow position: | chr9:2065637-2065367 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 71, 22 |
| Conread position: | 24-188 |
| Cow position: | chr9:50789138-50789305 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 101, 94 |
| Conread position: | 24-464 |
| Cow position: | chr9:1252396-1251955 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 37 |
| Conread position: | 25-451 |
| Cow position: | chr9:222971-222544 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 28 |
| Conread position: | 26-438 |
| Cow position: | chr9:17064824-17064408 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 8 |
| Conread position: | 26-464 |
| Cow position: | chr9:27933670-27934111 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 27 |
| Conread position: | 27-321 |
| Cow position: | chr9:1294236-1293944 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 60, 18 |
| Conread position: | 28-220 |
| Cow position: | chr9:18510146-18509953 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 119, 31 |
| Conread position: | 28-307 |
| Cow position: | chr9:417953-417671 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 118, 31 |
| Conread position: | 28-463 |
| Cow position: | chr9:60278444-60278003 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 31 |
| Conread position: | 28-464 |
| Cow position: | chr9:1996342-1995893 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 31 |
| Conread position: | 28-464 |
| Cow position: | chr9:4532069-4532511 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 31 |
| Conread position: | 28-464 |
| Cow position: | chr9:59174579-59174140 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 31 |
| Conread position: | 28-464 |
| Cow position: | chr9:59456021-59455578 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 31 |
| Conread position: | 30-354 |
| Cow position: | chr9:1979524-1979843 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 30 |
| Conread position: | 32-362 |
| Cow position: | chr9:54360188-54360514 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 19 |
| Conread position: | 32-462 |
| Cow position: | chr9:6757150-6757591 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 20 |
| Conread position: | 33-464 |
| Cow position: | chr9:792926-792493 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 62 |
| Conread position: | 34-263 |
| Cow position: | chr9:34107134-34106905 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 118, 18 |
| Conread position: | 34-463 |
| Cow position: | chr9:35657549-35657970 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 28 |
| Conread position: | 36-437 |
| Cow position: | chr9:31020393-31020796 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 26 |
| Conread position: | 37-339 |
| Cow position: | chr9:2697348-2697042 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 217 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 41, 83 |
| Conread position: | 37-354 |
| Cow position: | chr9:13219907-13220229 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 22 |
| Conread position: | 37-430 |
| Cow position: | chr9:15984076-15984461 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 267 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 10, 17 |
| Conread position: | 38-441 |
| Cow position: | chr9:2185550-2185952 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 59 |
| Conread position: | 38-451 |
| Cow position: | chr9:34243011-34242587 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 13 |
| Conread position: | 38-460 |
| Cow position: | chr9:25755616-25755207 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 13 |
| Conread position: | 38-464 |
| Cow position: | chr9:781214-780784 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 13 |
| Conread position: | 38-464 |
| Cow position: | chr9:4672194-4672628 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 13 |
| Conread position: | 38-464 |
| Cow position: | chr9:10314967-10315386 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 76 |
| Conread position: | 38-464 |
| Cow position: | chr9:15072102-15072534 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 13 |
| Conread position: | 38-464 |
| Cow position: | chr9:31194580-31194146 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 21 |
| Conread position: | 38-464 |
| Cow position: | chr9:45872941-45873369 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 13 |
| Conread position: | 38-464 |
| Cow position: | chr9:46626212-46625779 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 21 |
| Conread position: | 40-464 |
| Cow position: | chr9:52570256-52570671 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 11 |
| Conread position: | 41-464 |
| Cow position: | chr9:28626441-28626020 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 76 |
| Conread position: | 42-463 |
| Cow position: | chr9:59443449-59443870 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 17 |
| Conread position: | 43-275 |
| Cow position: | chr9:2488379-2488145 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 102, 16 |
| Conread position: | 45-462 |
| Cow position: | chr9:37129947-37129519 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 78 |
| Conread position: | 53-464 |
| Cow position: | chr9:3155636-3156048 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 12 |
| Conread position: | 53-464 |
| Cow position: | chr9:64118429-64118845 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 9 |
| Conread position: | 55-400 |
| Cow position: | chr9:20310128-20309788 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 62 |
| Conread position: | 59-432 |
| Cow position: | chr9:45473806-45473438 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 88, 59 |
| Conread position: | 77-404 |
| Cow position: | chr9:8969298-8968968 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 40 |
| Conread position: | 79-464 |
| Cow position: | chr9:3356345-3355972 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 45 |
| Conread position: | 80-464 |
| Cow position: | chr9:9055438-9055045 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 38 |
| Conread position: | 109-464 |
| Cow position: | chr9:6111317-6110976 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 40, 12 |
| Conread position: | 117-432 |
| Cow position: | chr9:23409878-23410187 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 26, 194 |
| Conread position: | 140-464 |
| Cow position: | chr9:37064105-37063776 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 168 |
| Conread position: | 170-464 |
| Cow position: | chr9:3586076-3586390 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 230 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 302-464 |
| Cow position: | chr9:1979831-1979999 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 132, 0 |
Show alignments to all cow chromosomes.