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Cow genome map

           
Conread name:
           
rche35_a23.y1
        

               
Conread position:
               
111-368
               

               
Cow position:
               
chr5:25597802-25598045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
113-359
               

               
Cow position:
               
chr5:52778594-52778357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
15, 41
               

               
Conread position:
               
114-385
               

               
Cow position:
               
chr5:32975585-32975321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
248, 19
               

               
Conread position:
               
115-390
               

               
Cow position:
               
chr5:5760341-5760066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
179, 38
               

               
Conread position:
               
116-308
               

               
Cow position:
               
chr5:53710722-53710529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
36, 84
               

               
Conread position:
               
116-394
               

               
Cow position:
               
chr5:30092655-30092385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
65, 37
               

               
Conread position:
               
116-425
               

               
Cow position:
               
chr5:34915084-34914775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
230, 38
               

               
Conread position:
               
117-390
               

               
Cow position:
               
chr5:52137904-52138177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
76, 84
               

               
Conread position:
               
118-382
               

               
Cow position:
               
chr5:50871781-50872046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
36, 101
               

               
Conread position:
               
119-417
               

               
Cow position:
               
chr5:5201870-5202173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
5, 79
               

               
Conread position:
               
119-421
               

               
Cow position:
               
chr5:40889327-40889027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
7, 78
               

               
Conread position:
               
121-385
               

               
Cow position:
               
chr5:56613591-56613325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
22, 33
               

               
Conread position:
               
121-389
               

               
Cow position:
               
chr5:57371771-57372047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
17, 28
               

               
Conread position:
               
122-292
               

               
Cow position:
               
chr5:6528659-6528827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
129, 21
               

               
Conread position:
               
123-352
               

               
Cow position:
               
chr5:17384173-17383954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
123-359
               

               
Cow position:
               
chr5:37713681-37713445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
28, 75
               

               
Conread position:
               
125-361
               

               
Cow position:
               
chr5:61771091-61771331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
67, 28
               

               
Conread position:
               
125-387
               

               
Cow position:
               
chr5:16938044-16937800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
126-286
               

               
Cow position:
               
chr5:62142654-62142812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
126-292
               

               
Cow position:
               
chr5:28035721-28035884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
17, 66
               

               
Conread position:
               
126-293
               

               
Cow position:
               
chr5:30949937-30949772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
22, 28
               

               
Conread position:
               
126-297
               

               
Cow position:
               
chr5:41981350-41981515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
126-307
               

               
Cow position:
               
chr5:61875522-61875694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
126-312
               

               
Cow position:
               
chr5:23678722-23678541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
25, 66
               

               
Conread position:
               
126-312
               

               
Cow position:
               
chr5:54060256-54060438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
126-315
               

               
Cow position:
               
chr5:64758791-64758600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
11, 75
               

               
Conread position:
               
126-359
               

               
Cow position:
               
chr5:49501845-49501611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
170, 27
               

               
Conread position:
               
126-361
               

               
Cow position:
               
chr5:14904091-14903857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
160, 73
               

               
Conread position:
               
126-361
               

               
Cow position:
               
chr5:16214664-16214890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
25, 74
               

               
Conread position:
               
126-361
               

               
Cow position:
               
chr5:53946876-53947108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
126-378
               

               
Cow position:
               
chr5:26262696-26262455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
15, 29
               

               
Conread position:
               
126-383
               

               
Cow position:
               
chr5:2309577-2309323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
236, 22
               

               
Conread position:
               
126-385
               

               
Cow position:
               
chr5:41713276-41713519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
25, 64
               

               
Conread position:
               
126-387
               

               
Cow position:
               
chr5:3771828-3772076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
16, 28
               

               
Conread position:
               
126-387
               

               
Cow position:
               
chr5:54048374-54048112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
120, 27
               

               
Conread position:
               
126-392
               

               
Cow position:
               
chr5:58555114-58555397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
17, 72
               

               
Conread position:
               
126-431
               

               
Cow position:
               
chr5:54311315-54311639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
173, 27
               

               
Conread position:
               
127-371
               

               
Cow position:
               
chr5:63234844-63234604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
163, 26
               

               
Conread position:
               
127-374
               

               
Cow position:
               
chr5:49474566-49474333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
127-375
               

               
Cow position:
               
chr5:63627545-63627313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
156, 22
               

               
Conread position:
               
127-382
               

               
Cow position:
               
chr5:47756757-47757001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
127-386
               

               
Cow position:
               
chr5:14920950-14920693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
154, 45
               

               
Conread position:
               
127-389
               

               
Cow position:
               
chr5:61455827-61456082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
226, 64
               

               
Conread position:
               
127-390
               

               
Cow position:
               
chr5:12322825-12322573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
230, 63
               

               
Conread position:
               
127-390
               

               
Cow position:
               
chr5:41935671-41935417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
245, 26
               

               
Conread position:
               
127-401
               

               
Cow position:
               
chr5:57686759-57686498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
17, 64
               

               
Conread position:
               
127-402
               

               
Cow position:
               
chr5:28224436-28224697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
236, 17
               

               
Conread position:
               
128-359
               

               
Cow position:
               
chr5:44054072-44053839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
8, 26
               

               
Conread position:
               
129-282
               

               
Cow position:
               
chr5:23527649-23527498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
129, 26
               

               
Conread position:
               
129-385
               

               
Cow position:
               
chr5:56070839-56071091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
23, 68
               

               
Conread position:
               
130-280
               

               
Cow position:
               
chr5:45574382-45574235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
130-288
               

               
Cow position:
               
chr5:34887216-34887057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
58, 23
               

               
Conread position:
               
130-289
               

               
Cow position:
               
chr5:43992306-43992463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
130-312
               

               
Cow position:
               
chr5:55019275-55019453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
130-325
               

               
Cow position:
               
chr5:26094185-26093991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
21, 67
               

               
Conread position:
               
130-355
               

               
Cow position:
               
chr5:60741226-60741448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
19, 39
               

               
Conread position:
               
130-371
               

               
Cow position:
               
chr5:20779414-20779181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
21, 60
               

               
Conread position:
               
130-371
               

               
Cow position:
               
chr5:67932484-67932248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
159, 49
               

               
Conread position:
               
130-372
               

               
Cow position:
               
chr5:58446789-58447047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
158, 60
               

               
Conread position:
               
130-381
               

               
Cow position:
               
chr5:7044724-7044477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
14, 73
               

               
Conread position:
               
130-386
               

               
Cow position:
               
chr5:18289113-18289352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
242, 53
               

               
Conread position:
               
130-386
               

               
Cow position:
               
chr5:24996240-24995989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
31, 43
               

               
Conread position:
               
130-387
               

               
Cow position:
               
chr5:26467606-26467861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
10, 62
               

               
Conread position:
               
130-387
               

               
Cow position:
               
chr5:50575768-50576004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
245, 22
               

               
Conread position:
               
130-389
               

               
Cow position:
               
chr5:12557308-12557049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
11, 64
               

               
Conread position:
               
132-383
               

               
Cow position:
               
chr5:55966897-55966642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
19, 59
               

               
Conread position:
               
133-287
               

               
Cow position:
               
chr5:45273516-45273365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
133-307
               

               
Cow position:
               
chr5:23168841-23168669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
133-353
               

               
Cow position:
               
chr5:47704142-47703924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
31, 64
               

               
Conread position:
               
133-355
               

               
Cow position:
               
chr5:37894976-37895198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
12, 65
               

               
Conread position:
               
133-355
               

               
Cow position:
               
chr5:48829141-48829358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
133-355
               

               
Cow position:
               
chr5:57265921-57265699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
13, 65
               

               
Conread position:
               
133-358
               

               
Cow position:
               
chr5:6503897-6503670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
18, 67
               

               
Conread position:
               
133-359
               

               
Cow position:
               
chr5:30266903-30266678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
13, 64
               

               
Conread position:
               
133-359
               

               
Cow position:
               
chr5:69751401-69751178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
133-361
               

               
Cow position:
               
chr5:11540064-11539843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
133-361
               

               
Cow position:
               
chr5:17555047-17554826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
78, 56
               

               
Conread position:
               
133-361
               

               
Cow position:
               
chr5:20128038-20128263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
133-361
               

               
Cow position:
               
chr5:48867479-48867261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
133-377
               

               
Cow position:
               
chr5:30247536-30247300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
234, 20
               

               
Conread position:
               
133-377
               

               
Cow position:
               
chr5:30253726-30253964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
133-379
               

               
Cow position:
               
chr5:31475669-31475911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
239, 11
               

               
Conread position:
               
133-382
               

               
Cow position:
               
chr5:40097579-40097831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
11, 38
               

               
Conread position:
               
133-383
               

               
Cow position:
               
chr5:38833106-38833345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
17, 58
               

               
Conread position:
               
133-383
               

               
Cow position:
               
chr5:45225827-45225590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
133-385
               

               
Cow position:
               
chr5:29681084-29681328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
147, 20
               

               
Conread position:
               
133-387
               

               
Cow position:
               
chr5:61784742-61784484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
147, 54
               

               
Conread position:
               
133-388
               

               
Cow position:
               
chr5:44028318-44028072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
133-389
               

               
Cow position:
               
chr5:30232892-30233147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
12, 72
               

               
Conread position:
               
133-390
               

               
Cow position:
               
chr5:62811809-62812068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 21
               

               
Conread position:
               
133-393
               

               
Cow position:
               
chr5:60016152-60016404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
11, 57
               

               
Conread position:
               
133-395
               

               
Cow position:
               
chr5:62107506-62107238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
59, 20
               

               
Conread position:
               
133-404
               

               
Cow position:
               
chr5:60210160-60209897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
13, 65
               

               
Conread position:
               
133-427
               

               
Cow position:
               
chr5:49342064-49341754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
160, 61
               

               
Conread position:
               
133-443
               

               
Cow position:
               
chr5:20288277-20287968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
146, 20
               

               
Conread position:
               
134-261
               

               
Cow position:
               
chr5:32696837-32696712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
13, 58
               

               
Conread position:
               
134-294
               

               
Cow position:
               
chr5:47323451-47323606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
134-297
               

               
Cow position:
               
chr5:24946227-24946387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
74, 19
               

               
Conread position:
               
134-335
               

               
Cow position:
               
chr5:30805152-30805341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
134-347
               

               
Cow position:
               
chr5:61007051-61007262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
13, 20
               

               
Conread position:
               
134-354
               

               
Cow position:
               
chr5:55795980-55795768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
84, 19
               

               
Conread position:
               
134-359
               

               
Cow position:
               
chr5:64523876-64523657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
159, 19
               

               
Conread position:
               
134-361
               

               
Cow position:
               
chr5:69033234-69033014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
139, 54
               

               
Conread position:
               
134-382
               

               
Cow position:
               
chr5:57393317-57393069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
32, 10
               

               
Conread position:
               
134-383
               

               
Cow position:
               
chr5:14550596-14550352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
134-386
               

               
Cow position:
               
chr5:65343607-65343861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
9, 67
               

               
Conread position:
               
134-387
               

               
Cow position:
               
chr5:29829909-29829653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
47, 124
               

               
Conread position:
               
134-387
               

               
Cow position:
               
chr5:72903245-72903005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
236, 19
               

               
Conread position:
               
134-389
               

               
Cow position:
               
chr5:17104839-17105082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
239, 62
               

               
Conread position:
               
134-389
               

               
Cow position:
               
chr5:32394584-32394840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
6, 57
               

               
Conread position:
               
134-391
               

               
Cow position:
               
chr5:64321740-64321999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
143, 54
               

               
Conread position:
               
134-396
               

               
Cow position:
               
chr5:55783962-55783714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
232, 15
               

               
Conread position:
               
134-404
               

               
Cow position:
               
chr5:11427246-11426982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
151, 19
               

               
Conread position:
               
134-409
               

               
Cow position:
               
chr5:66581949-66582228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
81, 19
               

               
Conread position:
               
135-354
               

               
Cow position:
               
chr5:19796961-19797184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
12, 62
               

               
Conread position:
               
135-359
               

               
Cow position:
               
chr5:18062332-18062103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
156, 64
               

               
Conread position:
               
135-361
               

               
Cow position:
               
chr5:15115891-15116116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
40, 18
               

               
Conread position:
               
135-361
               

               
Cow position:
               
chr5:57994881-57994671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
135-361
               

               
Cow position:
               
chr5:59631461-59631696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
117, 67
               

               
Conread position:
               
135-376
               

               
Cow position:
               
chr5:33918718-33918475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
31, 23
               

               
Conread position:
               
135-427
               

               
Cow position:
               
chr5:57279371-57279665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
280, 59
               

               
Conread position:
               
135-428
               

               
Cow position:
               
chr5:4226335-4226630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
182, 18
               

               
Conread position:
               
136-297
               

               
Cow position:
               
chr5:54767920-54767762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
6, 18
               

               
Conread position:
               
136-297
               

               
Cow position:
               
chr5:59627089-59627247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
136-361
               

               
Cow position:
               
chr5:55756432-55756204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
57, 53
               

               
Conread position:
               
136-378
               

               
Cow position:
               
chr5:30629171-30628928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
98, 54
               

               
Conread position:
               
136-381
               

               
Cow position:
               
chr5:5257299-5257054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
177, 8
               

               
Conread position:
               
136-382
               

               
Cow position:
               
chr5:6839095-6838848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
56, 17
               

               
Conread position:
               
136-383
               

               
Cow position:
               
chr5:19278718-19278473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
154, 38
               

               
Conread position:
               
136-386
               

               
Cow position:
               
chr5:66972420-66972663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
160, 13
               

               
Conread position:
               
136-402
               

               
Cow position:
               
chr5:57074343-57074086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
127, 54
               

               
Conread position:
               
137-281
               

               
Cow position:
               
chr5:63656467-63656607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
137-316
               

               
Cow position:
               
chr5:16206163-16205989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
73, 16
               

               
Conread position:
               
137-317
               

               
Cow position:
               
chr5:9234002-9233821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 52
               

               
Conread position:
               
137-361
               

               
Cow position:
               
chr5:17063095-17062870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
59, 16
               

               
Conread position:
               
137-387
               

               
Cow position:
               
chr5:17566448-17566203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
148, 16
               

               
Conread position:
               
137-387
               

               
Cow position:
               
chr5:29060935-29060704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
230, 23
               

               
Conread position:
               
138-294
               

               
Cow position:
               
chr5:38076493-38076339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
135, 52
               

               
Conread position:
               
138-294
               

               
Cow position:
               
chr5:57150655-57150811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
127, 54
               

               
Conread position:
               
138-308
               

               
Cow position:
               
chr5:38739414-38739245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
13, 21
               

               
Conread position:
               
138-361
               

               
Cow position:
               
chr5:25020777-25020547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
23, 34
               

               
Conread position:
               
138-374
               

               
Cow position:
               
chr5:41165078-41165303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
138-377
               

               
Cow position:
               
chr5:39447545-39447301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
118, 61
               

               
Conread position:
               
138-378
               

               
Cow position:
               
chr5:71015899-71015660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
14, 180
               

               
Conread position:
               
138-384
               

               
Cow position:
               
chr5:26097285-26097518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
138-399
               

               
Cow position:
               
chr5:15364260-15364518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
136, 15
               

               
Conread position:
               
139-297
               

               
Cow position:
               
chr5:63987454-63987298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
149, 51
               

               
Conread position:
               
139-297
               

               
Cow position:
               
chr5:67212352-67212507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
139-312
               

               
Cow position:
               
chr5:26477026-26476856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
139-331
               

               
Cow position:
               
chr5:60183794-60183979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
124, 131
               

               
Conread position:
               
139-335
               

               
Cow position:
               
chr5:37646552-37646357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
169, 52
               

               
Conread position:
               
139-361
               

               
Cow position:
               
chr5:12761126-12760911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
116, 14
               

               
Conread position:
               
139-361
               

               
Cow position:
               
chr5:35229146-35228935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
139-361
               

               
Cow position:
               
chr5:38717301-38717504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
139-361
               

               
Cow position:
               
chr5:66551906-66551683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
159, 74
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr5:30276681-30276911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
208, 51
               

               
Conread position:
               
139-378
               

               
Cow position:
               
chr5:43402896-43403134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
167, 51
               

               
Conread position:
               
139-379
               

               
Cow position:
               
chr5:4267662-4267891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
222, 16
               

               
Conread position:
               
139-381
               

               
Cow position:
               
chr5:64176136-64175901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
12, 52
               

               
Conread position:
               
139-383
               

               
Cow position:
               
chr5:22242781-22242543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
57, 85
               

               
Conread position:
               
139-385
               

               
Cow position:
               
chr5:34976849-34976608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
141, 9
               

               
Conread position:
               
139-385
               

               
Cow position:
               
chr5:46541064-46540828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
139-385
               

               
Cow position:
               
chr5:55955900-55956142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
63, 14
               

               
Conread position:
               
139-390
               

               
Cow position:
               
chr5:30845105-30845343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
124, 14
               

               
Conread position:
               
139-397
               

               
Cow position:
               
chr5:39937108-39937367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
135, 14
               

               
Conread position:
               
139-403
               

               
Cow position:
               
chr5:1247258-1247516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
157, 14
               

               
Conread position:
               
139-409
               

               
Cow position:
               
chr5:34505936-34505667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
7, 58
               

               
Conread position:
               
140-285
               

               
Cow position:
               
chr5:60715370-60715233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
140-294
               

               
Cow position:
               
chr5:4710159-4710008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
140-294
               

               
Cow position:
               
chr5:41294074-41294225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
135, 31
               

               
Conread position:
               
140-298
               

               
Cow position:
               
chr5:46322806-46322655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
140-307
               

               
Cow position:
               
chr5:9369280-9369114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
15, 60
               

               
Conread position:
               
140-358
               

               
Cow position:
               
chr5:57419801-57419590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
140-359
               

               
Cow position:
               
chr5:20843402-20843191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
105, 15
               

               
Conread position:
               
140-360
               

               
Cow position:
               
chr5:45397563-45397773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
14, 52
               

               
Conread position:
               
140-378
               

               
Cow position:
               
chr5:69383247-69383481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
222, 50
               

               
Conread position:
               
140-379
               

               
Cow position:
               
chr5:16893778-16893552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
140-381
               

               
Cow position:
               
chr5:47316981-47316747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
165, 13
               

               
Conread position:
               
140-382
               

               
Cow position:
               
chr5:7057407-7057168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
149, 9
               

               
Conread position:
               
140-387
               

               
Cow position:
               
chr5:58941-58696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
11, 60
               

               
Conread position:
               
140-387
               

               
Cow position:
               
chr5:26549148-26548906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
233, 50
               

               
Conread position:
               
140-387
               

               
Cow position:
               
chr5:42845601-42845358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
96, 59
               

               
Conread position:
               
140-402
               

               
Cow position:
               
chr5:56014723-56014977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
222, 50
               

               
Conread position:
               
140-403
               

               
Cow position:
               
chr5:69337812-69338063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
233, 50
               

               
Conread position:
               
141-294
               

               
Cow position:
               
chr5:37808671-37808519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
13, 59
               

               
Conread position:
               
141-305
               

               
Cow position:
               
chr5:37190103-37189942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
139, 12
               

               
Conread position:
               
141-312
               

               
Cow position:
               
chr5:13717574-13717408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
53, 12
               

               
Conread position:
               
141-312
               

               
Cow position:
               
chr5:63427012-63426842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
152, 58
               

               
Conread position:
               
141-361
               

               
Cow position:
               
chr5:12673480-12673271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
141-370
               

               
Cow position:
               
chr5:59330747-59330521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
141-371
               

               
Cow position:
               
chr5:57156322-57156082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
47, 12
               

               
Conread position:
               
141-374
               

               
Cow position:
               
chr5:56548565-56548787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
141-374
               

               
Cow position:
               
chr5:60523726-60523948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
6, 14
               

               
Conread position:
               
141-377
               

               
Cow position:
               
chr5:74643682-74643455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
221, 40
               

               
Conread position:
               
141-378
               

               
Cow position:
               
chr5:47871046-47870829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
141-386
               

               
Cow position:
               
chr5:47601804-47602041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
5, 50
               

               
Conread position:
               
141-386
               

               
Cow position:
               
chr5:52668023-52668275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
56, 88
               

               
Conread position:
               
141-387
               

               
Cow position:
               
chr5:33560741-33560501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
221, 49
               

               
Conread position:
               
141-387
               

               
Cow position:
               
chr5:57756035-57755799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
231, 40
               

               
Conread position:
               
141-397
               

               
Cow position:
               
chr5:52852965-52853218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
221, 12
               

               
Conread position:
               
141-398
               

               
Cow position:
               
chr5:33834036-33834285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
141-399
               

               
Cow position:
               
chr5:35247117-35246863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
141-407
               

               
Cow position:
               
chr5:63240971-63241231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
142-328
               

               
Cow position:
               
chr5:34528546-34528721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
120, 11
               

               
Conread position:
               
142-333
               

               
Cow position:
               
chr5:17602205-17602024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
142-383
               

               
Cow position:
               
chr5:18574167-18574412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
6, 51
               

               
Conread position:
               
142-384
               

               
Cow position:
               
chr5:46672198-46672443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
9, 31
               

               
Conread position:
               
142-387
               

               
Cow position:
               
chr5:6520006-6520245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
71, 11
               

               
Conread position:
               
142-387
               

               
Cow position:
               
chr5:11668192-11667948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 58
               

               
Conread position:
               
142-387
               

               
Cow position:
               
chr5:59082200-59081954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
22, 11
               

               
Conread position:
               
142-397
               

               
Cow position:
               
chr5:46681729-46681475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
57, 129
               

               
Conread position:
               
142-400
               

               
Cow position:
               
chr5:2827369-2827627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
157, 12
               

               
Conread position:
               
143-286
               

               
Cow position:
               
chr5:51935185-51935325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
143-297
               

               
Cow position:
               
chr5:4031996-4031839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
11, 58
               

               
Conread position:
               
143-312
               

               
Cow position:
               
chr5:9090027-9089866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
67, 10
               

               
Conread position:
               
143-312
               

               
Cow position:
               
chr5:51490251-51490085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
11, 47
               

               
Conread position:
               
143-355
               

               
Cow position:
               
chr5:64027024-64026812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
145, 47
               

               
Conread position:
               
143-389
               

               
Cow position:
               
chr5:50101381-50101136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
219, 156
               

               
Conread position:
               
143-404
               

               
Cow position:
               
chr5:65760534-65760278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
216, 18
               

               
Conread position:
               
143-416
               

               
Cow position:
               
chr5:65679975-65679711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
196, 56
               

               
Conread position:
               
143-422
               

               
Cow position:
               
chr5:36868733-36869003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
144-281
               

               
Cow position:
               
chr5:43844667-43844532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
144-294
               

               
Cow position:
               
chr5:29771524-29771672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
144-310
               

               
Cow position:
               
chr5:27293887-27293721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
152, 9
               

               
Conread position:
               
144-312
               

               
Cow position:
               
chr5:21039981-21039818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
141, 9
               

               
Conread position:
               
144-312
               

               
Cow position:
               
chr5:45420141-45419975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
144-312
               

               
Cow position:
               
chr5:53855696-53855868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
144-312
               

               
Cow position:
               
chr5:55129340-55129505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
144-312
               

               
Cow position:
               
chr5:57489948-57489789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
144-342
               

               
Cow position:
               
chr5:61492090-61492288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
136, 9
               

               
Conread position:
               
144-348
               

               
Cow position:
               
chr5:15470930-15471117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
144-351
               

               
Cow position:
               
chr5:54350364-54350172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
144-357
               

               
Cow position:
               
chr5:50482869-50482653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
45, 9
               

               
Conread position:
               
144-359
               

               
Cow position:
               
chr5:30178508-30178295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
144-360
               

               
Cow position:
               
chr5:67679175-67679389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
144-361
               

               
Cow position:
               
chr5:270104-269889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
21, 14
               

               
Conread position:
               
144-361
               

               
Cow position:
               
chr5:16939598-16939383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
144-361
               

               
Cow position:
               
chr5:35513211-35513430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
93, 55
               

               
Conread position:
               
144-361
               

               
Cow position:
               
chr5:56060073-56059855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
99, 10
               

               
Conread position:
               
144-361
               

               
Cow position:
               
chr5:57327790-57328006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
31, 9
               

               
Conread position:
               
144-361
               

               
Cow position:
               
chr5:61414342-61414557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
144-373
               

               
Cow position:
               
chr5:12247740-12247521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
144-377
               

               
Cow position:
               
chr5:51053655-51053424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
61, 9
               

               
Conread position:
               
144-383
               

               
Cow position:
               
chr5:45405034-45405279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
48, 126
               

               
Conread position:
               
144-383
               

               
Cow position:
               
chr5:52165180-52164943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
143, 9
               

               
Conread position:
               
144-384
               

               
Cow position:
               
chr5:56860442-56860679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
7, 56
               

               
Conread position:
               
144-386
               

               
Cow position:
               
chr5:24349103-24349347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
132, 46
               

               
Conread position:
               
144-387
               

               
Cow position:
               
chr5:26133101-26132862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
134, 52
               

               
Conread position:
               
144-387
               

               
Cow position:
               
chr5:35208261-35208496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
144-387
               

               
Cow position:
               
chr5:35459297-35459063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
88, 9
               

               
Conread position:
               
144-387
               

               
Cow position:
               
chr5:57062533-57062295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
121, 55
               

               
Conread position:
               
144-388
               

               
Cow position:
               
chr5:43858423-43858178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 55
               

               
Conread position:
               
144-389
               

               
Cow position:
               
chr5:30561928-30562165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
228, 55
               

               
Conread position:
               
144-394
               

               
Cow position:
               
chr5:7012851-7012607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
130, 45
               

               
Conread position:
               
144-395
               

               
Cow position:
               
chr5:50857930-50858181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
144-395
               

               
Cow position:
               
chr5:56028543-56028302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
229, 43
               

               
Conread position:
               
144-403
               

               
Cow position:
               
chr5:29828043-29828301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 9
               

               
Conread position:
               
144-403
               

               
Cow position:
               
chr5:60515032-60514774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
135, 55
               

               
Conread position:
               
144-404
               

               
Cow position:
               
chr5:4280441-4280694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
7, 156
               

               
Conread position:
               
144-404
               

               
Cow position:
               
chr5:17835162-17834909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
138, 52
               

               
Conread position:
               
144-404
               

               
Cow position:
               
chr5:37983159-37983421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
43, 9
               

               
Conread position:
               
144-404
               

               
Cow position:
               
chr5:59395651-59395923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
7, 127
               

               
Conread position:
               
144-407
               

               
Cow position:
               
chr5:55965898-55965636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
232, 46
               

               
Conread position:
               
144-446
               

               
Cow position:
               
chr5:17999495-17999197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
219, 9
               

               
Conread position:
               
145-264
               

               
Cow position:
               
chr5:52645082-52644966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
145-340
               

               
Cow position:
               
chr5:71494819-71495010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
145-352
               

               
Cow position:
               
chr5:2469209-2469010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
145-361
               

               
Cow position:
               
chr5:70750188-70749977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
145-378
               

               
Cow position:
               
chr5:59626973-59626742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
218, 8
               

               
Conread position:
               
145-378
               

               
Cow position:
               
chr5:67634519-67634283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
122, 8
               

               
Conread position:
               
145-385
               

               
Cow position:
               
chr5:57101524-57101294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
145-399
               

               
Cow position:
               
chr5:63647477-63647229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
222, 8
               

               
Conread position:
               
145-404
               

               
Cow position:
               
chr5:35989755-35990012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
48, 8
               

               
Conread position:
               
145-430
               

               
Cow position:
               
chr5:39035778-39036061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
145, 9
               

               
Conread position:
               
146-312
               

               
Cow position:
               
chr5:56428313-56428154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
146-331
               

               
Cow position:
               
chr5:11289394-11289209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
55, 7
               

               
Conread position:
               
146-387
               

               
Cow position:
               
chr5:33273693-33273931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 52
               

               
Conread position:
               
146-413
               

               
Cow position:
               
chr5:70678645-70678383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
250, 48
               

               
Conread position:
               
147-387
               

               
Cow position:
               
chr5:12873751-12873986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
188, 6
               

               
Conread position:
               
147-409
               

               
Cow position:
               
chr5:11562724-11562467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
210, 52
               

               
Conread position:
               
147-412
               

               
Cow position:
               
chr5:28814948-28814687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
135, 49
               

               
Conread position:
               
147-424
               

               
Cow position:
               
chr5:6444153-6443876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
155, 13
               

               
Conread position:
               
148-378
               

               
Cow position:
               
chr5:36142988-36143203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
127, 13
               

               
Conread position:
               
149-297
               

               
Cow position:
               
chr5:39258509-39258653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
137, 50
               

               
Conread position:
               
149-313
               

               
Cow position:
               
chr5:28230163-28230329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
149-385
               

               
Cow position:
               
chr5:21617459-21617687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
149-398
               

               
Cow position:
               
chr5:61914564-61914815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
122, 50
               

               
Conread position:
               
149-413
               

               
Cow position:
               
chr5:50943154-50942899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
118, 15
               

               
Conread position:
               
149-427
               

               
Cow position:
               
chr5:52729018-52728741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
136, 47
               

               
Conread position:
               
149-444
               

               
Cow position:
               
chr5:57767982-57767694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
205, 32
               

               
Conread position:
               
149-452
               

               
Cow position:
               
chr5:458490-458800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
150, 42
               

               
Conread position:
               
150-242
               

               
Cow position:
               
chr5:33552421-33552331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
93
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
150-251
               

               
Cow position:
               
chr5:14742216-14742315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
150-293
               

               
Cow position:
               
chr5:72564766-72564907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
150-294
               

               
Cow position:
               
chr5:36838962-36839103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
150-297
               

               
Cow position:
               
chr5:36855206-36855353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
150-353
               

               
Cow position:
               
chr5:14473402-14473200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
123, 48
               

               
Conread position:
               
150-357
               

               
Cow position:
               
chr5:36650552-36650760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
56, 117
               

               
Conread position:
               
150-360
               

               
Cow position:
               
chr5:58737756-58737548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
150-361
               

               
Cow position:
               
chr5:37646077-37646284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
58, 144
               

               
Conread position:
               
150-361
               

               
Cow position:
               
chr5:44810237-44810028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
150-361
               

               
Cow position:
               
chr5:52723579-52723784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
150-361
               

               
Cow position:
               
chr5:56072159-56071942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
43, 124
               

               
Conread position:
               
150-374
               

               
Cow position:
               
chr5:44163367-44163152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
150-374
               

               
Cow position:
               
chr5:72045672-72045456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
150-379
               

               
Cow position:
               
chr5:65552706-65552490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
213, 13
               

               
Conread position:
               
150-385
               

               
Cow position:
               
chr5:35969535-35969777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
149, 39
               

               
Conread position:
               
150-386
               

               
Cow position:
               
chr5:5855860-5856095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
225, 49
               

               
Conread position:
               
150-387
               

               
Cow position:
               
chr5:19752309-19752537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
226, 49
               

               
Conread position:
               
150-387
               

               
Cow position:
               
chr5:52108266-52108024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
115, 43
               

               
Conread position:
               
150-387
               

               
Cow position:
               
chr5:61999555-61999316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
213, 49
               

               
Conread position:
               
150-389
               

               
Cow position:
               
chr5:50723048-50723291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
211, 46
               

               
Conread position:
               
150-401
               

               
Cow position:
               
chr5:12299913-12300160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
136, 46
               

               
Conread position:
               
150-403
               

               
Cow position:
               
chr5:25366101-25366351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 115
               

               
Conread position:
               
150-404
               

               
Cow position:
               
chr5:7409954-7410194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
150-408
               

               
Cow position:
               
chr5:1104877-1104620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
132, 46
               

               
Conread position:
               
150-408
               

               
Cow position:
               
chr5:43604143-43604395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
212, 47
               

               
Conread position:
               
150-409
               

               
Cow position:
               
chr5:61049334-61049591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 46
               

               
Conread position:
               
150-410
               

               
Cow position:
               
chr5:43371192-43370935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
212, 31
               

               
Conread position:
               
150-411
               

               
Cow position:
               
chr5:68537663-68537404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
111, 50
               

               
Conread position:
               
150-421
               

               
Cow position:
               
chr5:63187881-63187608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
42, 99
               

               
Conread position:
               
151-302
               

               
Cow position:
               
chr5:7723667-7723817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
11, 49
               

               
Conread position:
               
151-387
               

               
Cow position:
               
chr5:37255332-37255100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
152-288
               

               
Cow position:
               
chr5:34463574-34463442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
152-305
               

               
Cow position:
               
chr5:1396604-1396754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
152-360
               

               
Cow position:
               
chr5:38040558-38040360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
152-375
               

               
Cow position:
               
chr5:60948137-60948359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
210, 47
               

               
Conread position:
               
153-273
               

               
Cow position:
               
chr5:55350907-55350787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
153-286
               

               
Cow position:
               
chr5:58856108-58856238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
153-288
               

               
Cow position:
               
chr5:57230333-57230200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
153-293
               

               
Cow position:
               
chr5:59873077-59872937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
40, 36
               

               
Conread position:
               
153-360
               

               
Cow position:
               
chr5:22608648-22608847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
121, 26
               

               
Conread position:
               
153-361
               

               
Cow position:
               
chr5:34347723-34347524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
153-368
               

               
Cow position:
               
chr5:3743327-3743541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
146, 43
               

               
Conread position:
               
153-368
               

               
Cow position:
               
chr5:20995087-20994874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
48, 181
               

               
Conread position:
               
153-370
               

               
Cow position:
               
chr5:29353120-29352915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
92, 46
               

               
Conread position:
               
153-375
               

               
Cow position:
               
chr5:15479131-15479356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
142, 43
               

               
Conread position:
               
153-383
               

               
Cow position:
               
chr5:64140540-64140773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
22, 53
               

               
Conread position:
               
153-387
               

               
Cow position:
               
chr5:44848019-44847794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
41, 131
               

               
Conread position:
               
153-390
               

               
Cow position:
               
chr5:42064210-42064453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
210, 46
               

               
Conread position:
               
153-390
               

               
Cow position:
               
chr5:44796728-44796494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
210, 37
               

               
Conread position:
               
153-403
               

               
Cow position:
               
chr5:40152484-40152742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
29, 117
               

               
Conread position:
               
153-417
               

               
Cow position:
               
chr5:55176900-55177148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
208, 36
               

               
Conread position:
               
154-361
               

               
Cow position:
               
chr5:11769277-11769481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
137, 36
               

               
Conread position:
               
154-381
               

               
Cow position:
               
chr5:46023059-46022825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
149, 108
               

               
Conread position:
               
154-388
               

               
Cow position:
               
chr5:52137048-52136817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
154-388
               

               
Cow position:
               
chr5:53055555-53055324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
154-395
               

               
Cow position:
               
chr5:55068712-55068940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
155-289
               

               
Cow position:
               
chr5:2851602-2851729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
155-294
               

               
Cow position:
               
chr5:26723455-26723591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
155-297
               

               
Cow position:
               
chr5:56287496-56287355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
9, 42
               

               
Conread position:
               
155-306
               

               
Cow position:
               
chr5:56361803-56361949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
155-361
               

               
Cow position:
               
chr5:54875692-54875484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
67, 113
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr5:53935540-53935330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
155-381
               

               
Cow position:
               
chr5:46129662-46129434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
138, 87
               

               
Conread position:
               
155-401
               

               
Cow position:
               
chr5:17828472-17828228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
139, 44
               

               
Conread position:
               
155-404
               

               
Cow position:
               
chr5:50713757-50713496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
48, 218
               

               
Conread position:
               
155-419
               

               
Cow position:
               
chr5:73168004-73167745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
229, 33
               

               
Conread position:
               
156-332
               

               
Cow position:
               
chr5:7770911-7771090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
33, 56
               

               
Conread position:
               
156-359
               

               
Cow position:
               
chr5:64137263-64137465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
8, 41
               

               
Conread position:
               
156-361
               

               
Cow position:
               
chr5:51920295-51920499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
8, 41
               

               
Conread position:
               
156-387
               

               
Cow position:
               
chr5:5016437-5016656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
202, 43
               

               
Conread position:
               
156-387
               

               
Cow position:
               
chr5:6439013-6438791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
156-387
               

               
Cow position:
               
chr5:26497669-26497455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
156-387
               

               
Cow position:
               
chr5:49919930-49920163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
156-415
               

               
Cow position:
               
chr5:56549372-56549625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
37, 29
               

               
Conread position:
               
157-374
               

               
Cow position:
               
chr5:12434552-12434761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
205, 45
               

               
Conread position:
               
157-374
               

               
Cow position:
               
chr5:44722504-44722292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
16, 43
               

               
Conread position:
               
157-383
               

               
Cow position:
               
chr5:2240980-2240758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
98, 30
               

               
Conread position:
               
157-387
               

               
Cow position:
               
chr5:44196920-44196692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
136, 39
               

               
Conread position:
               
157-389
               

               
Cow position:
               
chr5:25035245-25035019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
147, 23
               

               
Conread position:
               
157-404
               

               
Cow position:
               
chr5:58519407-58519162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
210, 37
               

               
Conread position:
               
158-297
               

               
Cow position:
               
chr5:35126064-35126202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
5, 39
               

               
Conread position:
               
158-372
               

               
Cow position:
               
chr5:71788703-71788917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
95, 41
               

               
Conread position:
               
161-295
               

               
Cow position:
               
chr5:12738542-12738414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
161-377
               

               
Cow position:
               
chr5:53835730-53835945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
127, 29
               

               
Conread position:
               
161-381
               

               
Cow position:
               
chr5:64060459-64060676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
211, 38
               

               
Conread position:
               
161-387
               

               
Cow position:
               
chr5:55942366-55942143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
161-393
               

               
Cow position:
               
chr5:32338952-32338717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
153, 7
               

               
Conread position:
               
161-404
               

               
Cow position:
               
chr5:27179670-27179915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
143, 41
               

               
Conread position:
               
161-409
               

               
Cow position:
               
chr5:60212597-60212842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
121, 42
               

               
Conread position:
               
162-384
               

               
Cow position:
               
chr5:3582574-3582791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
101, 40
               

               
Conread position:
               
162-389
               

               
Cow position:
               
chr5:3492194-3492427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
92, 37
               

               
Conread position:
               
162-389
               

               
Cow position:
               
chr5:24915516-24915283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
17, 26
               

               
Conread position:
               
162-407
               

               
Cow position:
               
chr5:19335767-19335523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
152, 34
               

               
Conread position:
               
162-409
               

               
Cow position:
               
chr5:69461347-69461587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
70, 28
               

               
Conread position:
               
162-423
               

               
Cow position:
               
chr5:51539137-51539393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
210, 34
               

               
Conread position:
               
163-361
               

               
Cow position:
               
chr5:7177166-7177361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
110, 33
               

               
Conread position:
               
163-361
               

               
Cow position:
               
chr5:54750822-54751017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
163-381
               

               
Cow position:
               
chr5:991479-991703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
163-381
               

               
Cow position:
               
chr5:47743643-47743850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
204, 25
               

               
Conread position:
               
163-386
               

               
Cow position:
               
chr5:26147606-26147827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
200, 27
               

               
Conread position:
               
163-387
               

               
Cow position:
               
chr5:52001608-52001384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
192, 33
               

               
Conread position:
               
164-377
               

               
Cow position:
               
chr5:14167858-14168075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
21, 27
               

               
Conread position:
               
164-386
               

               
Cow position:
               
chr5:26167437-26167657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
200, 23
               

               
Conread position:
               
165-383
               

               
Cow position:
               
chr5:45845674-45845459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
90, 25
               

               
Conread position:
               
165-387
               

               
Cow position:
               
chr5:57497410-57497193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
28, 137
               

               
Conread position:
               
166-307
               

               
Cow position:
               
chr5:42623160-42623023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
167-390
               

               
Cow position:
               
chr5:35145347-35145572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
126, 9
               

               
Conread position:
               
168-308
               

               
Cow position:
               
chr5:54436776-54436911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
168-370
               

               
Cow position:
               
chr5:6695565-6695766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
121, 86
               

               
Conread position:
               
168-379
               

               
Cow position:
               
chr5:49407373-49407160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
194, 28
               

               
Conread position:
               
168-382
               

               
Cow position:
               
chr5:57687566-57687350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
30, 108
               

               
Conread position:
               
168-407
               

               
Cow position:
               
chr5:66659529-66659770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
119, 31
               

               
Conread position:
               
168-427
               

               
Cow position:
               
chr5:54312621-54312878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
195, 22
               

               
Conread position:
               
169-368
               

               
Cow position:
               
chr5:51233998-51233809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
169-419
               

               
Cow position:
               
chr5:46063518-46063760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
170-378
               

               
Cow position:
               
chr5:12901939-12902144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
170-378
               

               
Cow position:
               
chr5:35190132-35190331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
171-368
               

               
Cow position:
               
chr5:41884945-41885129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
171-383
               

               
Cow position:
               
chr5:37842256-37842048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
137, 33
               

               
Conread position:
               
171-386
               

               
Cow position:
               
chr5:57526901-57526688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
192, 28
               

               
Conread position:
               
172-314
               

               
Cow position:
               
chr5:44752284-44752143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
172-361
               

               
Cow position:
               
chr5:13270993-13270806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
85, 18
               

               
Conread position:
               
172-385
               

               
Cow position:
               
chr5:50579142-50578927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
103, 18
               

               
Conread position:
               
172-415
               

               
Cow position:
               
chr5:24464768-24464998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
33, 52
               

               
Conread position:
               
173-297
               

               
Cow position:
               
chr5:51277828-51277707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
173-307
               

               
Cow position:
               
chr5:51490577-51490445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
173-361
               

               
Cow position:
               
chr5:9487055-9486874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
173-386
               

               
Cow position:
               
chr5:21003339-21003535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
20, 16
               

               
Conread position:
               
174-294
               

               
Cow position:
               
chr5:36822913-36823027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
174-372
               

               
Cow position:
               
chr5:20882598-20882392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
125, 25
               

               
Conread position:
               
174-377
               

               
Cow position:
               
chr5:3677749-3677957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
113, 25
               

               
Conread position:
               
174-377
               

               
Cow position:
               
chr5:34787599-34787801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
188, 5
               

               
Conread position:
               
174-387
               

               
Cow position:
               
chr5:16185404-16185614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
174-387
               

               
Cow position:
               
chr5:43839976-43839764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
17, 190
               

               
Conread position:
               
175-355
               

               
Cow position:
               
chr5:32935772-32935948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
175-360
               

               
Cow position:
               
chr5:63173016-63172840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
82, 24
               

               
Conread position:
               
175-361
               

               
Cow position:
               
chr5:20812573-20812758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
79, 21
               

               
Conread position:
               
175-361
               

               
Cow position:
               
chr5:30035094-30035278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
175-361
               

               
Cow position:
               
chr5:44734698-44734518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
175-379
               

               
Cow position:
               
chr5:61580309-61580506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
90, 22
               

               
Conread position:
               
175-387
               

               
Cow position:
               
chr5:22102583-22102794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
202, 120
               

               
Conread position:
               
175-404
               

               
Cow position:
               
chr5:37090616-37090389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
11, 96
               

               
Conread position:
               
175-410
               

               
Cow position:
               
chr5:57139970-57139733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 92
               

               
Conread position:
               
176-334
               

               
Cow position:
               
chr5:694892-695046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
106, 23
               

               
Conread position:
               
176-361
               

               
Cow position:
               
chr5:62341056-62341239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
78, 23
               

               
Conread position:
               
176-369
               

               
Cow position:
               
chr5:54753224-54753032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
41, 20
               

               
Conread position:
               
176-383
               

               
Cow position:
               
chr5:47220516-47220724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
95, 23
               

               
Conread position:
               
176-389
               

               
Cow position:
               
chr5:57744896-57744667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
125, 29
               

               
Conread position:
               
176-404
               

               
Cow position:
               
chr5:57399224-57398998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
196, 23
               

               
Conread position:
               
176-405
               

               
Cow position:
               
chr5:16668725-16668947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
216, 21
               

               
Conread position:
               
177-361
               

               
Cow position:
               
chr5:29256678-29256499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
101, 22
               

               
Conread position:
               
177-394
               

               
Cow position:
               
chr5:19079281-19079489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
184, 21
               

               
Conread position:
               
177-413
               

               
Cow position:
               
chr5:54127316-54127548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
16, 109
               

               
Conread position:
               
178-358
               

               
Cow position:
               
chr5:51125979-51125812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
178-361
               

               
Cow position:
               
chr5:50087797-50087977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
15, 35
               

               
Conread position:
               
178-371
               

               
Cow position:
               
chr5:64843941-64843747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
125, 21
               

               
Conread position:
               
179-361
               

               
Cow position:
               
chr5:19561419-19561237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
17, 10
               

               
Conread position:
               
179-361
               

               
Cow position:
               
chr5:53980723-53980543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
179-382
               

               
Cow position:
               
chr5:62011714-62011915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
176, 17
               

               
Conread position:
               
179-409
               

               
Cow position:
               
chr5:4347673-4347431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
107, 20
               

               
Conread position:
               
180-362
               

               
Cow position:
               
chr5:62572564-62572741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
180-391
               

               
Cow position:
               
chr5:26894687-26894475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
136, 16
               

               
Conread position:
               
180-412
               

               
Cow position:
               
chr5:73424649-73424412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
106, 16
               

               
Conread position:
               
180-415
               

               
Cow position:
               
chr5:20126935-20127172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
45, 19
               

               
Conread position:
               
180-422
               

               
Cow position:
               
chr5:40122578-40122337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
196, 16
               

               
Conread position:
               
180-448
               

               
Cow position:
               
chr5:742763-743026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
170, 16
               

               
Conread position:
               
183-378
               

               
Cow position:
               
chr5:70189107-70189308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
82, 21
               

               
Conread position:
               
183-404
               

               
Cow position:
               
chr5:41755950-41755741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
92, 13
               

               
Conread position:
               
183-435
               

               
Cow position:
               
chr5:65140326-65140586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
10, 92
               

               
Conread position:
               
184-378
               

               
Cow position:
               
chr5:27084330-27084524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
9, 180
               

               
Conread position:
               
184-379
               

               
Cow position:
               
chr5:36205723-36205917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
9, 86
               

               
Conread position:
               
184-387
               

               
Cow position:
               
chr5:41736215-41736421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 162
               

               
Conread position:
               
185-378
               

               
Cow position:
               
chr5:14454077-14454269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
95, 7
               

               
Conread position:
               
186-409
               

               
Cow position:
               
chr5:30497533-30497756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
176, 99
               

               
Conread position:
               
188-384
               

               
Cow position:
               
chr5:4824183-4824389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
34, 103
               

               
Conread position:
               
188-387
               

               
Cow position:
               
chr5:8736242-8736039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 39
               

               
Conread position:
               
189-384
               

               
Cow position:
               
chr5:22186457-22186642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
174, 102
               

               
Conread position:
               
190-334
               

               
Cow position:
               
chr5:29979918-29979782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
190-382
               

               
Cow position:
               
chr5:53779195-53779384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
17, 10
               

               
Conread position:
               
190-388
               

               
Cow position:
               
chr5:60126730-60126933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
74, 80
               

               
Conread position:
               
190-407
               

               
Cow position:
               
chr5:54404814-54404611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
210, 42
               

               
Conread position:
               
191-381
               

               
Cow position:
               
chr5:49821469-49821664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
107, 100
               

               
Conread position:
               
191-389
               

               
Cow position:
               
chr5:19294485-19294281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
97, 83
               

               
Conread position:
               
191-390
               

               
Cow position:
               
chr5:54340810-54341009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
168, 21
               

               
Conread position:
               
191-411
               

               
Cow position:
               
chr5:1766258-1766037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 30
               

               
Conread position:
               
192-294
               

               
Cow position:
               
chr5:70353942-70353839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
192-355
               

               
Cow position:
               
chr5:54330922-54331090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
111, 77
               

               
Conread position:
               
192-358
               

               
Cow position:
               
chr5:54980280-54980444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
100, 51
               

               
Conread position:
               
192-361
               

               
Cow position:
               
chr5:71445432-71445601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
192-378
               

               
Cow position:
               
chr5:29172029-29172216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
39, 76
               

               
Conread position:
               
192-382
               

               
Cow position:
               
chr5:46755170-46755358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
26, 84
               

               
Conread position:
               
192-383
               

               
Cow position:
               
chr5:12562718-12562530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
38, 82
               

               
Conread position:
               
192-383
               

               
Cow position:
               
chr5:34288208-34288023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
92, 21
               

               
Conread position:
               
192-383
               

               
Cow position:
               
chr5:46710624-46710815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
88, 28
               

               
Conread position:
               
192-383
               

               
Cow position:
               
chr5:51298670-51298485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
192-384
               

               
Cow position:
               
chr5:70270909-70271098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
192-385
               

               
Cow position:
               
chr5:6086301-6086109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
10, 99
               

               
Conread position:
               
192-386
               

               
Cow position:
               
chr5:6876926-6876727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
47, 32
               

               
Conread position:
               
192-386
               

               
Cow position:
               
chr5:22667113-22667304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
181, 98
               

               
Conread position:
               
192-386
               

               
Cow position:
               
chr5:62995999-62996194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
175, 171
               

               
Conread position:
               
192-387
               

               
Cow position:
               
chr5:30221736-30221541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
180, 74
               

               
Conread position:
               
192-389
               

               
Cow position:
               
chr5:25495316-25495114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
111, 165
               

               
Conread position:
               
192-400
               

               
Cow position:
               
chr5:2355562-2355766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
53, 81
               

               
Conread position:
               
192-400
               

               
Cow position:
               
chr5:5808138-5808346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
90, 43
               

               
Conread position:
               
192-404
               

               
Cow position:
               
chr5:28881650-28881430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
101, 179
               

               
Conread position:
               
192-407
               

               
Cow position:
               
chr5:48062075-48061856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
109, 79
               

               
Conread position:
               
192-409
               

               
Cow position:
               
chr5:56433923-56434138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
113, 99
               

               
Conread position:
               
192-417
               

               
Cow position:
               
chr5:4864585-4864800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
170, 70
               

               
Conread position:
               
192-433
               

               
Cow position:
               
chr5:44901551-44901807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
109, 94
               

               
Conread position:
               
192-435
               

               
Cow position:
               
chr5:43465567-43465802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
88, 74
               

               
Conread position:
               
192-457
               

               
Cow position:
               
chr5:19298637-19298371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
53, 45
               

               
Conread position:
               
193-357
               

               
Cow position:
               
chr5:7139790-7139636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
193-361
               

               
Cow position:
               
chr5:22387016-22386858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
100, 119
               

               
Conread position:
               
193-378
               

               
Cow position:
               
chr5:59335813-59335998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
101, 171
               

               
Conread position:
               
193-379
               

               
Cow position:
               
chr5:74887857-74887672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
193-401
               

               
Cow position:
               
chr5:56327678-56327474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 108
               

               
Conread position:
               
194-385
               

               
Cow position:
               
chr5:31648464-31648646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
84, 26
               

               
Conread position:
               
194-388
               

               
Cow position:
               
chr5:51012043-51012235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
51, 43
               

               
Conread position:
               
194-389
               

               
Cow position:
               
chr5:36634751-36634948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
121, 5
               

               
Conread position:
               
194-389
               

               
Cow position:
               
chr5:69427409-69427222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
171, 105
               

               
Conread position:
               
194-394
               

               
Cow position:
               
chr5:7676111-7675916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
173, 97
               

               
Conread position:
               
195-376
               

               
Cow position:
               
chr5:50762277-50762465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
87, 48
               

               
Conread position:
               
196-361
               

               
Cow position:
               
chr5:41226960-41226795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
57, 63
               

               
Conread position:
               
196-378
               

               
Cow position:
               
chr5:56525666-56525485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
196-381
               

               
Cow position:
               
chr5:57302811-57303006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
196-383
               

               
Cow position:
               
chr5:45854537-45854731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
33, 175
               

               
Conread position:
               
196-398
               

               
Cow position:
               
chr5:57087017-57086812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
166, 89
               

               
Conread position:
               
197-378
               

               
Cow position:
               
chr5:30492746-30492566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
62, 7
               

               
Conread position:
               
197-384
               

               
Cow position:
               
chr5:20345584-20345774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
165, 51
               

               
Conread position:
               
197-405
               

               
Cow position:
               
chr5:38683550-38683758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
76, 68
               

               
Conread position:
               
198-361
               

               
Cow position:
               
chr5:65745717-65745559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
198-366
               

               
Cow position:
               
chr5:69682301-69682134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
165, 0
               

               
Conread position:
               
198-383
               

               
Cow position:
               
chr5:12724344-12724159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
12, 57
               

               
Conread position:
               
198-388
               

               
Cow position:
               
chr5:61201807-61201996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
165, 0
               

               
Conread position:
               
198-408
               

               
Cow position:
               
chr5:57556077-57556282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
130, 150
               

               
Conread position:
               
199-384
               

               
Cow position:
               
chr5:17987846-17987663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 45
               

               
Conread position:
               
200-387
               

               
Cow position:
               
chr5:19052742-19052558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
201-379
               

               
Cow position:
               
chr5:52029458-52029632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
148, 37
               

               
Conread position:
               
201-381
               

               
Cow position:
               
chr5:60207759-60207934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
172, 82
               

               
Conread position:
               
201-382
               

               
Cow position:
               
chr5:17086969-17086788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
131, 25
               

               
Conread position:
               
202-382
               

               
Cow position:
               
chr5:69765982-69765805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
202-385
               

               
Cow position:
               
chr5:34918398-34918576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
171, 88
               

               
Conread position:
               
202-387
               

               
Cow position:
               
chr5:37253481-37253659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
173, 80
               

               
Conread position:
               
202-387
               

               
Cow position:
               
chr5:58401621-58401798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
202-413
               

               
Cow position:
               
chr5:67950734-67950519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
103, 67
               

               
Conread position:
               
204-361
               

               
Cow position:
               
chr5:63940007-63939849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
87, 23
               

               
Conread position:
               
204-389
               

               
Cow position:
               
chr5:41530886-41530697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
93, 65
               

               
Conread position:
               
205-381
               

               
Cow position:
               
chr5:49207272-49207100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
59, 65
               

               
Conread position:
               
205-381
               

               
Cow position:
               
chr5:60100525-60100691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
157, 58
               

               
Conread position:
               
205-381
               

               
Cow position:
               
chr5:60153830-60153996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
157, 58
               

               
Conread position:
               
205-386
               

               
Cow position:
               
chr5:29599491-29599315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
157, 90
               

               
Conread position:
               
206-377
               

               
Cow position:
               
chr5:53175202-53175025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
54, 64
               

               
Conread position:
               
206-378
               

               
Cow position:
               
chr5:21721414-21721250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
206-385
               

               
Cow position:
               
chr5:43846329-43846140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
24, 133
               

               
Conread position:
               
206-424
               

               
Cow position:
               
chr5:21339213-21338984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
83, 175
               

               
Conread position:
               
208-378
               

               
Cow position:
               
chr5:38079428-38079604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
91, 58
               

               
Conread position:
               
208-423
               

               
Cow position:
               
chr5:35235631-35235414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
168, 155
               

               
Conread position:
               
209-383
               

               
Cow position:
               
chr5:59662999-59662820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
154, 87
               

               
Conread position:
               
210-425
               

               
Cow position:
               
chr5:15770395-15770177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
76, 12
               

               
Conread position:
               
213-374
               

               
Cow position:
               
chr5:47888668-47888504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
78, 58
               

               
Conread position:
               
213-379
               

               
Cow position:
               
chr5:57447603-57447438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
213-382
               

               
Cow position:
               
chr5:43611761-43611933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
149, 136
               

               
Conread position:
               
213-383
               

               
Cow position:
               
chr5:58487439-58487605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
159, 11
               

               
Conread position:
               
213-404
               

               
Cow position:
               
chr5:37941744-37941555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
69, 56
               

               
Conread position:
               
214-378
               

               
Cow position:
               
chr5:55949615-55949453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
215-374
               

               
Cow position:
               
chr5:54713000-54712847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
215-390
               

               
Cow position:
               
chr5:26149099-26149277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
30, 22
               

               
Conread position:
               
215-402
               

               
Cow position:
               
chr5:32975823-32976014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
79, 164
               

               
Conread position:
               
215-412
               

               
Cow position:
               
chr5:56643132-56643332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
107, 88
               

               
Conread position:
               
215-423
               

               
Cow position:
               
chr5:48819338-48819551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
64, 28
               

               
Conread position:
               
216-378
               

               
Cow position:
               
chr5:12504724-12504564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
29, 21
               

               
Conread position:
               
219-411
               

               
Cow position:
               
chr5:24108991-24108803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
60, 52
               

               
Conread position:
               
220-387
               

               
Cow position:
               
chr5:47960191-47960031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
220-406
               

               
Cow position:
               
chr5:63300148-63300329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
222-361
               

               
Cow position:
               
chr5:54555118-54554976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
222-392
               

               
Cow position:
               
chr5:45436424-45436255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
123, 81
               

               
Conread position:
               
222-394
               

               
Cow position:
               
chr5:29010328-29010492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
223-408
               

               
Cow position:
               
chr5:19626651-19626833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
144, 78
               

               
Conread position:
               
227-385
               

               
Cow position:
               
chr5:34639199-34639356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
69, 79
               

               
Conread position:
               
227-422
               

               
Cow position:
               
chr5:56624440-56624246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
65, 137
               

               
Conread position:
               
229-396
               

               
Cow position:
               
chr5:57584955-57585124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
133, 84
               

               
Conread position:
               
229-408
               

               
Cow position:
               
chr5:4728153-4728325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
143, 70
               

               
Conread position:
               
230-361
               

               
Cow position:
               
chr5:16637779-16637641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
230-383
               

               
Cow position:
               
chr5:14419930-14419787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
230-387
               

               
Cow position:
               
chr5:28660310-28660465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
258-381
               

               
Cow position:
               
chr5:40740221-40740093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
269-425
               

               
Cow position:
               
chr5:74690135-74689976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
104, 94
               

               
Conread position:
               
272-407
               

               
Cow position:
               
chr5:56428452-56428320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
91, 0
               
Show alignments to all cow chromosomes.