Cow genome map

Conread name: rcje38_p18.y1

Conread position: 1-109
Cow position: chrX:29585140-29585248 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-112
Cow position: chrX:12082302-12082192 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 1-114
Cow position: chrX:37232428-37232541 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 89
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-120
Cow position: chrX:25328594-25328475 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 109, 14

Conread position: 1-120
Cow position: chrX:46429798-46429679 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-127
Cow position: chrX:4615989-4615865 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 94, 0

Conread position: 1-129
Cow position: chrX:41164635-41164760 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 1-133
Cow position: chrX:31312050-31312182 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 112
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 1-134
Cow position: chrX:878359-878226 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 112
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 1-134
Cow position: chrX:23091891-23092027 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 1-136
Cow position: chrX:24424380-24424245 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-141
Cow position: chrX:616238-616097 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 123, 0

Conread position: 1-141
Cow position: chrX:618981-618847 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 123, 55

Conread position: 1-141
Cow position: chrX:28878153-28878012 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 136, 0

Conread position: 1-141
Cow position: chrX:36848556-36848418 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 121
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 43, 0

Conread position: 1-141
Cow position: chrX:37129290-37129432 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 106
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 125, 0

Conread position: 1-141
Cow position: chrX:40269512-40269655 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 51, 0

Conread position: 1-141
Cow position: chrX:43730202-43730063 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 103
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 1-143
Cow position: chrX:25788884-25788744 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 105
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 114, 0

Conread position: 1-146
Cow position: chrX:38006745-38006604 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 117
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 128, 20

Conread position: 1-148
Cow position: chrX:17725996-17726144 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 110, 0

Conread position: 1-153
Cow position: chrX:45174871-45175022 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 117, 125

Conread position: 1-170
Cow position: chrX:4515706-4515879 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 138
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 25, 77

Conread position: 1-175
Cow position: chrX:47079648-47079824 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 135, 0

Conread position: 1-179
Cow position: chrX:14275722-14275548 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 139
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 133, 0

Conread position: 1-187
Cow position: chrX:31294551-31294361 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 136
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 121, 0

Conread position: 1-192
Cow position: chrX:12309365-12309173 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 132
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 125, 185

Conread position: 1-196
Cow position: chrX:10831469-10831265 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 53, 82

Conread position: 1-196
Cow position: chrX:41192725-41192905 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 123, 0

Conread position: 1-196
Cow position: chrX:41810147-41809959 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 139
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 61, 56

Conread position: 1-202
Cow position: chrX:44991392-44991195 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 147
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 55, 0

Conread position: 1-203
Cow position: chrX:1088119-1087925 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 153
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 43, 0

Conread position: 1-203
Cow position: chrX:4466988-4467174 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 159
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 100, 0

Conread position: 1-203
Cow position: chrX:22392963-22392765 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 154
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 103, 0

Conread position: 1-203
Cow position: chrX:24749109-24749310 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 156
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 115, 40

Conread position: 1-203
Cow position: chrX:27075030-27074828 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 143
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 131, 186

Conread position: 1-203
Cow position: chrX:29230020-29230230 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 156
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 114, 194

Conread position: 1-203
Cow position: chrX:35383015-35382819 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 150
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 60, 0

Conread position: 1-203
Cow position: chrX:38301830-38302037 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 151
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 137, 191

Conread position: 1-203
Cow position: chrX:38642270-38642465 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 164
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 116, 0

Conread position: 1-203
Cow position: chrX:47345348-47345553 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 156
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 96, 116

Conread position: 1-206
Cow position: chrX:38654409-38654206 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 120, 47

Conread position: 1-206
Cow position: chrX:42836202-42836407 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 144
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 125, 186

Conread position: 1-208
Cow position: chrX:11656102-11656306 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 0

Conread position: 1-208
Cow position: chrX:12979813-12979607 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 164
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 0

Conread position: 1-208
Cow position: chrX:13177456-13177256 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 168
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 19, 122

Conread position: 1-208
Cow position: chrX:17956714-17956917 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 21, 0

Conread position: 1-208
Cow position: chrX:19018810-19018600 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 156
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 135, 189

Conread position: 1-208
Cow position: chrX:19356490-19356692 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 36, 64

Conread position: 1-208
Cow position: chrX:23088877-23089063 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 1-208
Cow position: chrX:27394005-27393790 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 158
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 145, 190

Conread position: 1-208
Cow position: chrX:28940263-28940472 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 131

Conread position: 1-208
Cow position: chrX:31442808-31442611 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 155
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 124, 0

Conread position: 1-208
Cow position: chrX:34314045-34314249 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 164
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 136, 0

Conread position: 1-208
Cow position: chrX:34376963-34377167 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 157
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 135, 0

Conread position: 1-208
Cow position: chrX:38549466-38549675 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 156
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 22, 187

Conread position: 1-208
Cow position: chrX:45699950-45699752 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 145
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 64, 28

Conread position: 1-209
Cow position: chrX:4996606-4996818 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 154
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 48, 195

Conread position: 1-209
Cow position: chrX:17524363-17524154 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 125, 187

Conread position: 1-209
Cow position: chrX:21327932-21328143 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 145
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 22, 189

Conread position: 1-209
Cow position: chrX:25035361-25035152 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 153
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 51, 41

Conread position: 1-209
Cow position: chrX:31479992-31480195 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 168
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 101, 55

Conread position: 1-209
Cow position: chrX:40680635-40680844 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 156
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 125, 187

Conread position: 1-209
Cow position: chrX:41871088-41871286 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 161
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 122, 0

Conread position: 1-209
Cow position: chrX:42381091-42380883 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 177

Conread position: 1-210
Cow position: chrX:7695772-7695993 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 128, 43

Conread position: 1-210
Cow position: chrX:26493028-26493237 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 144
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 119, 8

Conread position: 1-210
Cow position: chrX:34792290-34792093 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 162
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 71, 0

Conread position: 1-214
Cow position: chrX:907967-908175 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 149
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 143, 58

Conread position: 1-214
Cow position: chrX:11762980-11762777 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 150
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 115, 0

Conread position: 1-214
Cow position: chrX:19761775-19761983 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 147
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 123, 0

Conread position: 1-214
Cow position: chrX:42247161-42246947 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 159
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 125, 187

Conread position: 1-220
Cow position: chrX:20168579-20168792 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 163
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 125, 109

Conread position: 1-220
Cow position: chrX:40108498-40108273 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 154
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 36, 192

Conread position: 1-220
Cow position: chrX:40336932-40337151 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 98, 43

Conread position: 1-221
Cow position: chrX:4632837-4632613 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 160
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 51, 189

Conread position: 1-221
Cow position: chrX:11326076-11325868 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 172
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 85, 0

Conread position: 1-221
Cow position: chrX:16762792-16763007 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 162
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 80, 118

Conread position: 1-221
Cow position: chrX:24633705-24633927 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 180
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 46, 186

Conread position: 1-221
Cow position: chrX:27668937-27668723 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 0

Conread position: 1-221
Cow position: chrX:34554744-34554965 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 150
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 125, 187

Conread position: 1-221
Cow position: chrX:40826729-40826505 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 156
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 112, 12

Conread position: 1-221
Cow position: chrX:42449993-42449770 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 158
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 125, 187

Conread position: 1-222
Cow position: chrX:6559427-6559214 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 157
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 125, 72

Conread position: 1-222
Cow position: chrX:8917415-8917637 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 152
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 125, 93

Conread position: 1-224
Cow position: chrX:4153010-4152800 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 173
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 123, 0

Conread position: 1-224
Cow position: chrX:24170708-24170479 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 166
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 142, 75

Conread position: 1-224
Cow position: chrX:25207834-25207619 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 156
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 107, 76

Conread position: 1-224
Cow position: chrX:26205427-26205214 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 156
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 98, 93

Conread position: 1-224
Cow position: chrX:30672375-30672139 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 166
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 57, 100

Conread position: 1-224
Cow position: chrX:34505028-34504810 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 176
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 61, 95

Conread position: 1-224
Cow position: chrX:46532474-46532249 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 159
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 127, 191

Conread position: 1-225
Cow position: chrX:5118481-5118253 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 172
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 28, 190

Conread position: 1-225
Cow position: chrX:9651003-9650781 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 160
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 200, 135

Conread position: 1-225
Cow position: chrX:13121959-13122188 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 168
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 102, 192

Conread position: 1-225
Cow position: chrX:27446707-27446929 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 98, 93

Conread position: 1-225
Cow position: chrX:35885706-35885485 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 157
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 206, 123

Conread position: 1-225
Cow position: chrX:36356133-36356347 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 98, 32

Conread position: 1-226
Cow position: chrX:19469485-19469272 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 168
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 108, 0

Conread position: 1-227
Cow position: chrX:20957259-20957483 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 187

Conread position: 1-227
Cow position: chrX:27261212-27261434 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 171
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 45, 180

Conread position: 1-227
Cow position: chrX:41941644-41941868 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 163
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 98, 93

Conread position: 1-228
Cow position: chrX:8869381-8869158 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 124

Conread position: 1-228
Cow position: chrX:31436495-31436719 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 123

Conread position: 1-228
Cow position: chrX:35285194-35285420 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 169
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 125, 187

Conread position: 1-229
Cow position: chrX:4289463-4289684 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 172
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 22, 121

Conread position: 1-229
Cow position: chrX:4328162-4327934 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 162
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 133, 104

Conread position: 1-229
Cow position: chrX:5134495-5134719 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 177
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 63, 23

Conread position: 1-229
Cow position: chrX:16836265-16836049 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 178
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 47, 0

Conread position: 1-229
Cow position: chrX:25815880-25815650 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 130, 94

Conread position: 1-229
Cow position: chrX:29601807-29601579 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 171
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 220, 185

Conread position: 1-229
Cow position: chrX:35658820-35659043 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 160
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 130, 43

Conread position: 1-229
Cow position: chrX:37955868-37956095 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 157
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 98, 93

Conread position: 1-229
Cow position: chrX:38218735-38218961 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 171
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 28, 34

Conread position: 1-229
Cow position: chrX:39180212-39179980 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 164
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 125, 82

Conread position: 1-229
Cow position: chrX:40532022-40531780 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 184
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 138, 203

Conread position: 1-229
Cow position: chrX:41526501-41526288 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 175
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 25, 0

Conread position: 1-230
Cow position: chrX:27705607-27705837 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 168
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 125, 162

Conread position: 1-230
Cow position: chrX:28067871-28068103 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 160
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 139, 187

Conread position: 1-230
Cow position: chrX:33654823-33654590 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 164
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 123, 187

Conread position: 1-230
Cow position: chrX:34837043-34836823 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 173
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 121, 0

Conread position: 1-230
Cow position: chrX:46291158-46291389 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 176
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 57, 109

Conread position: 1-231
Cow position: chrX:27431897-27431677 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 176
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 115, 0

Conread position: 1-231
Cow position: chrX:30962856-30962623 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 172
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 97, 188

Conread position: 1-231
Cow position: chrX:32574338-32574573 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 166
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 51, 41

Conread position: 1-234
Cow position: chrX:32821050-32821295 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 175
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 124, 28

Conread position: 1-234
Cow position: chrX:42893945-42894175 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 171
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 17, 123

Conread position: 1-238
Cow position: chrX:42479854-42480082 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 179
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 173, 116

Conread position: 1-240
Cow position: chrX:31744984-31744755 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 173
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 19, 123

Conread position: 1-242
Cow position: chrX:3806703-3806940 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 177
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 98, 93

Conread position: 2-124
Cow position: chrX:21573594-21573715 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 5, 74

Conread position: 2-138
Cow position: chrX:33639997-33640133 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 100
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 2-214
Cow position: chrX:13923887-13924095 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 148
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 7, 0

Conread position: 2-229
Cow position: chrX:19717543-19717761 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 157
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 202, 40

Conread position: 3-208
Cow position: chrX:23471842-23471640 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 154
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 7, 0

Conread position: 3-222
Cow position: chrX:17744651-17744863 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 171
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 16, 58

Conread position: 3-228
Cow position: chrX:51873-51653 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 160
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 207, 29

Conread position: 3-228
Cow position: chrX:41453325-41453545 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 142, 0

Conread position: 3-230
Cow position: chrX:48236839-48237067 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 155
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 21, 49

Conread position: 3-233
Cow position: chrX:7351323-7351552 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 127, 41

Conread position: 4-133
Cow position: chrX:42160650-42160776 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 37, 0

Conread position: 4-141
Cow position: chrX:5135499-5135359 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 64, 110

Conread position: 4-141
Cow position: chrX:23498653-23498519 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 4-177
Cow position: chrX:13647761-13647586 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 140
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 135, 0

Conread position: 4-180
Cow position: chrX:169521-169340 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 120, 27

Conread position: 4-192
Cow position: chrX:34222740-34222926 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 73, 0

Conread position: 4-199
Cow position: chrX:4645889-4645695 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 135
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 182, 0

Conread position: 4-199
Cow position: chrX:20151884-20152067 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 29, 0

Conread position: 4-203
Cow position: chrX:10516277-10516477 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 147
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 122, 184

Conread position: 4-203
Cow position: chrX:29478748-29478945 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 138
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 4-208
Cow position: chrX:24331800-24332005 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 95, 90

Conread position: 4-208
Cow position: chrX:38587819-38587617 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 155
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 120, 181

Conread position: 4-208
Cow position: chrX:42855482-42855691 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 121, 188

Conread position: 4-209
Cow position: chrX:16984665-16984864 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 0

Conread position: 4-209
Cow position: chrX:20584352-20584541 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 164
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 112, 0

Conread position: 4-210
Cow position: chrX:4109208-4109415 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 151
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 122, 183

Conread position: 4-210
Cow position: chrX:13913099-13913305 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 110, 93

Conread position: 4-210
Cow position: chrX:29050274-29050472 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 159
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 102, 40

Conread position: 4-210
Cow position: chrX:32943052-32942850 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 156
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 109, 175

Conread position: 4-213
Cow position: chrX:37072413-37072619 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 160
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 118, 0

Conread position: 4-221
Cow position: chrX:22115293-22115074 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 186

Conread position: 4-221
Cow position: chrX:45502169-45502373 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 167
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 16, 114

Conread position: 4-222
Cow position: chrX:24365797-24365580 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 155
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 95, 73

Conread position: 4-225
Cow position: chrX:5026280-5026496 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 166
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 171, 117

Conread position: 4-225
Cow position: chrX:32877351-32877126 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 160
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 113, 128

Conread position: 4-226
Cow position: chrX:4399149-4399361 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 171
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 23, 54

Conread position: 4-228
Cow position: chrX:31489544-31489766 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 162
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 122, 184

Conread position: 4-229
Cow position: chrX:32866899-32867119 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 0

Conread position: 4-231
Cow position: chrX:20339868-20339640 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 170
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 122, 73

Conread position: 4-231
Cow position: chrX:46587846-46588073 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 163
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 203, 147

Conread position: 4-232
Cow position: chrX:41027183-41027409 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 167
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 120, 184

Conread position: 4-242
Cow position: chrX:4559763-4559994 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 175
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 122, 23

Conread position: 5-123
Cow position: chrX:45846127-45846244 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 5-136
Cow position: chrX:35387899-35387770 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 101
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 110, 39

Conread position: 5-136
Cow position: chrX:40557654-40557520 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 110, 0

Conread position: 5-138
Cow position: chrX:34508569-34508702 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 5-138
Cow position: chrX:41884387-41884254 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 5-138
Cow position: chrX:44926481-44926615 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 101
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 5-175
Cow position: chrX:41862389-41862556 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 17, 0

Conread position: 5-197
Cow position: chrX:9635165-9634975 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 149
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 111, 37

Conread position: 5-197
Cow position: chrX:47061421-47061603 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 135
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 111, 0

Conread position: 5-200
Cow position: chrX:40685303-40685109 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 156
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 181, 0

Conread position: 5-202
Cow position: chrX:1466187-1466385 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 163
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 117

Conread position: 5-202
Cow position: chrX:20340618-20340436 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 107, 0

Conread position: 5-203
Cow position: chrX:6544282-6544468 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 148
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 39, 0

Conread position: 5-203
Cow position: chrX:21986265-21986078 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 153
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 17, 0

Conread position: 5-203
Cow position: chrX:22074821-22075018 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 161
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 54, 131

Conread position: 5-203
Cow position: chrX:26881540-26881339 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 163
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 111, 161

Conread position: 5-203
Cow position: chrX:27145629-27145822 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 158
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 119, 0

Conread position: 5-203
Cow position: chrX:42927799-42927607 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 162
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 132, 0

Conread position: 5-207
Cow position: chrX:37781084-37780885 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 117, 0

Conread position: 5-208
Cow position: chrX:6414072-6414260 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 152
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 36, 0

Conread position: 5-208
Cow position: chrX:9252138-9251935 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 160
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 110, 182

Conread position: 5-208
Cow position: chrX:10252173-10251974 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 160
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 22, 35

Conread position: 5-208
Cow position: chrX:29467753-29467554 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 154
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 126, 0

Conread position: 5-208
Cow position: chrX:38560584-38560778 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 150
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 116, 0

Conread position: 5-208
Cow position: chrX:38853223-38853439 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 160
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 110, 44

Conread position: 5-208
Cow position: chrX:43115176-43115377 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 157
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 32, 0

Conread position: 5-208
Cow position: chrX:45976951-45977152 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 137, 144

Conread position: 5-209
Cow position: chrX:9201573-9201772 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 166
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 125

Conread position: 5-209
Cow position: chrX:12972707-12972907 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 157
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 15, 113

Conread position: 5-209
Cow position: chrX:45110680-45110880 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 32, 23

Conread position: 5-210
Cow position: chrX:34532545-34532741 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 160
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 105, 0

Conread position: 5-214
Cow position: chrX:27306479-27306673 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 160
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 117, 0

Conread position: 5-214
Cow position: chrX:32208797-32208592 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 165
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 197, 62

Conread position: 5-215
Cow position: chrX:38094491-38094291 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 157
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 31, 0

Conread position: 5-221
Cow position: chrX:2935982-2936195 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 111

Conread position: 5-221
Cow position: chrX:12437245-12437041 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 165
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 202, 44

Conread position: 5-221
Cow position: chrX:35985845-35986056 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 173
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 120, 26

Conread position: 5-224
Cow position: chrX:19394578-19394797 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 168
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 110, 184

Conread position: 5-225
Cow position: chrX:34411871-34412093 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 188

Conread position: 5-237
Cow position: chrX:34565311-34565542 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 171
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 132, 52

Conread position: 6-207
Cow position: chrX:7911046-7910846 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 148
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 131, 72

Conread position: 6-208
Cow position: chrX:40035415-40035214 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 161
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 13, 20

Conread position: 6-220
Cow position: chrX:23359085-23358877 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 6-220
Cow position: chrX:33855193-33854985 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 170
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 200, 67

Conread position: 6-222
Cow position: chrX:20583692-20583900 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 0

Conread position: 7-202
Cow position: chrX:41166799-41166607 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 23, 89

Conread position: 7-220
Cow position: chrX:46079112-46079328 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 168
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 118, 89

Conread position: 7-221
Cow position: chrX:39290386-39290595 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 102

Conread position: 7-228
Cow position: chrX:47855008-47855226 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 165
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 214, 65

Conread position: 7-229
Cow position: chrX:6599755-6599524 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 188

Conread position: 8-208
Cow position: chrX:2314591-2314390 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 151
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 97, 87

Conread position: 8-209
Cow position: chrX:40046547-40046334 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 162
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 117, 40

Conread position: 9-208
Cow position: chrX:34398755-34398555 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 138
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 112, 85

Conread position: 9-208
Cow position: chrX:41238325-41238134 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 142
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 33, 0

Conread position: 9-223
Cow position: chrX:30337925-30337712 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 163
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 107, 35

Conread position: 9-224
Cow position: chrX:31250417-31250634 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 149
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 117, 180

Conread position: 9-231
Cow position: chrX:18111407-18111634 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 154
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 111, 87

Conread position: 9-235
Cow position: chrX:46909844-46910064 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 159
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 198, 118

Conread position: 10-120
Cow position: chrX:4942228-4942118 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 10-134
Cow position: chrX:29501854-29501730 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 10-141
Cow position: chrX:41939853-41939985 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 111, 0

Conread position: 10-203
Cow position: chrX:8326934-8327128 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 156
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 116, 177

Conread position: 10-229
Cow position: chrX:5919522-5919738 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 168
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 68, 110

Conread position: 10-255
Cow position: chrX:17795011-17795255 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 179
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 195, 176

Conread position: 11-173
Cow position: chrX:29688144-29687981 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 135, 84

Conread position: 11-206
Cow position: chrX:41858850-41858658 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 150
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 93, 9

Conread position: 11-208
Cow position: chrX:14883925-14883729 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 51, 44

Conread position: 12-208
Cow position: chrX:48822310-48822114 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 112, 175

Conread position: 12-219
Cow position: chrX:37749951-37749755 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 153
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 40, 30

Conread position: 12-221
Cow position: chrX:4091956-4092160 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 147
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 114, 169

Conread position: 12-221
Cow position: chrX:38935313-38935524 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 101, 17

Conread position: 12-225
Cow position: chrX:18439028-18439244 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 150
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 98, 84

Conread position: 12-229
Cow position: chrX:20345483-20345701 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 129, 9

Conread position: 14-229
Cow position: chrX:27206831-27207041 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 162
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 44, 142

Conread position: 15-196
Cow position: chrX:8731129-8731310 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 127
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 111, 27

Conread position: 15-197
Cow position: chrX:34420769-34420953 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 111, 174

Conread position: 15-207
Cow position: chrX:5487897-5487721 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 148
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 21, 0

Conread position: 15-210
Cow position: chrX:24336042-24335844 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 136
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 111, 173

Conread position: 15-213
Cow position: chrX:44995533-44995735 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 45, 174

Conread position: 15-225
Cow position: chrX:34991399-34991604 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 167
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 119, 0

Conread position: 15-227
Cow position: chrX:35276020-35276235 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 152
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 111, 173

Conread position: 15-229
Cow position: chrX:17231770-17231987 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 152
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 91, 174

Conread position: 15-229
Cow position: chrX:17498357-17498575 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 111, 173

Conread position: 15-234
Cow position: chrX:27270410-27270620 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 158
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 62, 123

Conread position: 15-240
Cow position: chrX:42331319-42331529 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 159
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 102, 0

Conread position: 16-195
Cow position: chrX:30824025-30824200 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 106, 0

Conread position: 17-214
Cow position: chrX:6480559-6480361 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 157
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 31, 9

Conread position: 17-230
Cow position: chrX:32747768-32747969 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 7, 125

Conread position: 17-232
Cow position: chrX:10415216-10415001 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 148
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 96, 77

Conread position: 18-196
Cow position: chrX:31986536-31986356 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 40, 100

Conread position: 18-203
Cow position: chrX:22482652-22482466 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 138
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 42, 31

Conread position: 18-203
Cow position: chrX:39220117-39220311 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 101, 183

Conread position: 18-208
Cow position: chrX:37752068-37751883 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 133
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 102, 0

Conread position: 18-209
Cow position: chrX:8642084-8642274 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 88, 48

Conread position: 18-226
Cow position: chrX:20887603-20887402 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 153
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 85, 110

Conread position: 18-228
Cow position: chrX:41435511-41435292 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 156
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 81, 76

Conread position: 18-229
Cow position: chrX:12095734-12095523 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 155
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 126, 170

Conread position: 18-230
Cow position: chrX:876804-876597 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 108, 40

Conread position: 19-203
Cow position: chrX:29542178-29542005 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 141
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 49, 0

Conread position: 19-221
Cow position: chrX:15231621-15231417 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 145
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 65, 100

Conread position: 20-203
Cow position: chrX:11653811-11653990 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 6, 0

Conread position: 20-204
Cow position: chrX:45759711-45759893 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 141, 104

Conread position: 20-206
Cow position: chrX:6407584-6407770 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 114, 39

Conread position: 20-208
Cow position: chrX:35409792-35409980 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 86, 62

Conread position: 20-208
Cow position: chrX:40648933-40649130 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 7, 176

Conread position: 20-208
Cow position: chrX:41454914-41454725 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 93, 74

Conread position: 21-221
Cow position: chrX:31983544-31983337 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 167
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 104, 173

Conread position: 22-194
Cow position: chrX:25286679-25286508 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 106, 22

Conread position: 22-226
Cow position: chrX:27442497-27442292 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 91, 72

Conread position: 23-203
Cow position: chrX:35681610-35681790 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 101, 164

Conread position: 23-219
Cow position: chrX:1960382-1960186 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 140
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 115, 164

Conread position: 23-224
Cow position: chrX:31948892-31948688 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 140
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 107, 165

Conread position: 23-225
Cow position: chrX:16763882-16763687 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 84, 71

Conread position: 23-225
Cow position: chrX:17292998-17293201 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 144
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 90, 73

Conread position: 26-197
Cow position: chrX:34543830-34544003 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 108, 163

Conread position: 26-221
Cow position: chrX:36975997-36976191 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 137
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 111, 162

Conread position: 26-227
Cow position: chrX:23136786-23136978 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 145
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 129, 95

Conread position: 26-231
Cow position: chrX:20666855-20666652 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 153
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 44, 104

Conread position: 30-222
Cow position: chrX:48372445-48372260 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 56, 0

Conread position: 31-229
Cow position: chrX:11529397-11529588 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 171, 13

Conread position: 33-169
Cow position: chrX:31252461-31252598 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 93, 40

Conread position: 33-187
Cow position: chrX:35542940-35543092 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 123
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 90, 0

Conread position: 33-208
Cow position: chrX:597421-597250 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 93, 35

Conread position: 33-208
Cow position: chrX:19000179-19000355 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 19, 11

Conread position: 33-208
Cow position: chrX:37867306-37867482 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 93, 155

Conread position: 33-208
Cow position: chrX:41790376-41790199 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 29, 24

Conread position: 33-208
Cow position: chrX:42760305-42760481 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 124
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 93, 154

Conread position: 33-208
Cow position: chrX:46068706-46068536 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 90, 0

Conread position: 33-209
Cow position: chrX:31827791-31827626 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 87, 0

Conread position: 33-220
Cow position: chrX:42432455-42432272 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 136
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 168, 26

Conread position: 33-227
Cow position: chrX:46533252-46533055 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 138
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 97, 155

Conread position: 33-228
Cow position: chrX:26843216-26843012 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 145
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 76, 61

Conread position: 33-229
Cow position: chrX:1121314-1121115 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 140
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 80, 63

Conread position: 33-229
Cow position: chrX:4169978-4169782 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 145
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 137, 62

Conread position: 34-208
Cow position: chrX:5915242-5915419 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 126
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 45, 156

Conread position: 35-203
Cow position: chrX:27170794-27170957 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 44, 123

Conread position: 36-196
Cow position: chrX:10237857-10237697 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 98, 78

Conread position: 36-228
Cow position: chrX:42875268-42875457 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 143
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 100, 0

Conread position: 36-229
Cow position: chrX:1101613-1101798 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 66, 0

Conread position: 36-233
Cow position: chrX:41199280-41199473 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 39, 94

Conread position: 37-196
Cow position: chrX:11813129-11813290 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 15, 58

Conread position: 37-203
Cow position: chrX:1122490-1122324 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 134
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 91, 149

Conread position: 37-203
Cow position: chrX:23497634-23497474 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 134
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 73, 0

Conread position: 37-208
Cow position: chrX:16323961-16323787 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 23, 9

Conread position: 37-208
Cow position: chrX:27175055-27175228 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 89, 152

Conread position: 37-209
Cow position: chrX:12807-12972 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 37-209
Cow position: chrX:17525810-17525648 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 134
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 86, 0

Conread position: 37-209
Cow position: chrX:23335919-23335746 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 97, 151

Conread position: 37-210
Cow position: chrX:37867489-37867665 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 87, 151

Conread position: 37-232
Cow position: chrX:33466681-33466873 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 62, 57

Conread position: 39-207
Cow position: chrX:11602424-11602260 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 104, 17

Conread position: 39-210
Cow position: chrX:1996393-1996219 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 66, 56

Conread position: 39-224
Cow position: chrX:40056158-40055983 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 130, 0

Conread position: 39-225
Cow position: chrX:26882021-26881834 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 143
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 94, 149

Conread position: 39-232
Cow position: chrX:21288549-21288362 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 55, 136

Conread position: 39-234
Cow position: chrX:23485580-23485781 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 82, 157

Conread position: 40-206
Cow position: chrX:22552919-22552753 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 120
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 86, 139

Conread position: 40-208
Cow position: chrX:11589307-11589139 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 107, 147

Conread position: 40-229
Cow position: chrX:47100538-47100346 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 139
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 12, 55

Conread position: 41-210
Cow position: chrX:4750271-4750108 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 135
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 51, 0

Conread position: 41-221
Cow position: chrX:29682050-29681878 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 146
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 69, 0

Conread position: 44-197
Cow position: chrX:34270625-34270778 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 61, 51

Conread position: 44-203
Cow position: chrX:6640491-6640647 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 51, 0

Conread position: 44-207
Cow position: chrX:39642558-39642401 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 131
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 35, 0

Conread position: 44-221
Cow position: chrX:42086891-42087068 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 148
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 87, 139

Conread position: 44-228
Cow position: chrX:1102081-1102262 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 103, 96

Conread position: 45-208
Cow position: chrX:14135743-14135903 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 134
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 88, 0

Conread position: 46-221
Cow position: chrX:48574291-48574114 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 60, 48

Conread position: 46-223
Cow position: chrX:33678407-33678229 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 53, 48

Conread position: 46-229
Cow position: chrX:41010964-41011137 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 53, 48

Conread position: 46-230
Cow position: chrX:40556393-40556214 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 147
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 54, 98

Conread position: 46-231
Cow position: chrX:30042025-30041851 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 136
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 123, 0

Conread position: 49-224
Cow position: chrX:41215391-41215569 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 144
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 77, 133

Conread position: 50-195
Cow position: chrX:39419644-39419506 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 87, 0

Conread position: 50-202
Cow position: chrX:25420401-25420546 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 126
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 138, 73

Conread position: 50-203
Cow position: chrX:4486954-4486801 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 77, 137

Conread position: 50-231
Cow position: chrX:36962820-36963003 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 72, 44

Conread position: 51-221
Cow position: chrX:6634415-6634586 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 123
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 62, 43

Conread position: 51-223
Cow position: chrX:16801192-16801024 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 58, 17

Conread position: 51-225
Cow position: chrX:14951282-14951108 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 68, 44

Conread position: 51-231
Cow position: chrX:4403388-4403569 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 75, 137

Conread position: 51-263
Cow position: chrX:296462-296676 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 149
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 62, 43

Conread position: 52-225
Cow position: chrX:24425930-24425758 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 69, 42

Conread position: 55-210
Cow position: chrX:31279849-31279697 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 130
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 69, 0

Conread position: 58-222
Cow position: chrX:11670764-11670931 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 52, 36

Conread position: 59-216
Cow position: chrX:25827056-25826902 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 142, 39

Conread position: 59-227
Cow position: chrX:43059172-43059014 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 132
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 58, 0

Conread position: 61-203
Cow position: chrX:231937-231803 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 117
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 63, 0

Conread position: 61-210
Cow position: chrX:35029845-35029706 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 74, 0

Conread position: 61-217
Cow position: chrX:13785141-13784975 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 66, 136

Conread position: 61-222
Cow position: chrX:30789450-30789287 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 52, 33

Conread position: 61-225
Cow position: chrX:37717803-37717964 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 38, 11

Conread position: 61-229
Cow position: chrX:1938095-1938260 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 159, 125

Conread position: 61-229
Cow position: chrX:11674191-11674361 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 61, 30

Conread position: 61-229
Cow position: chrX:26720601-26720443 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 38, 33

Conread position: 61-229
Cow position: chrX:35509598-35509428 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 133
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 45, 34

Conread position: 61-231
Cow position: chrX:22283918-22284088 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 42, 33

Conread position: 62-203
Cow position: chrX:43028314-43028452 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 116
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 75, 0

Conread position: 62-225
Cow position: chrX:42506867-42506700 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 37, 32

Conread position: 63-199
Cow position: chrX:44798965-44798832 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 89, 59

Conread position: 63-238
Cow position: chrX:11517897-11517722 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 46, 31

Conread position: 64-209
Cow position: chrX:40108259-40108115 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 48, 76

Conread position: 64-221
Cow position: chrX:37176958-37177108 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 130
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 77, 0

Conread position: 64-221
Cow position: chrX:47979381-47979541 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 62, 124

Conread position: 69-225
Cow position: chrX:8759710-8759870 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 126
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 27, 120

Conread position: 70-203
Cow position: chrX:3494957-3494827 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 109
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 54, 0

Conread position: 70-215
Cow position: chrX:47730572-47730717 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 47, 56

Conread position: 70-232
Cow position: chrX:30958820-30958977 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 56, 111

Conread position: 73-194
Cow position: chrX:4366439-4366559 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 113, 0

Conread position: 73-213
Cow position: chrX:38727046-38726911 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 115
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 9, 54

Conread position: 74-228
Cow position: chrX:42216537-42216389 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 126
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 64, 0

Conread position: 75-203
Cow position: chrX:10479844-10479973 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 59, 113

Conread position: 78-223
Cow position: chrX:42159039-42159182 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 21, 16

Conread position: 78-225
Cow position: chrX:15534114-15533964 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 55, 111

Conread position: 79-208
Cow position: chrX:48044134-48043995 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 46, 118

Conread position: 80-229
Cow position: chrX:41194005-41194153 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 54, 15

Conread position: 82-221
Cow position: chrX:42220600-42220460 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 105
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 51, 106

Conread position: 86-231
Cow position: chrX:29723857-29724000 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 38, 8

Conread position: 95-210
Cow position: chrX:45737441-45737557 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 33, 92

Conread position: 105-229
Cow position: chrX:3130770-3130893 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 96, 11

Conread position: 111-232
Cow position: chrX:47123184-47123302 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 101, 31

Conread position: 115-223
Cow position: chrX:38726072-38726180 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 90, 71

Conread position: 121-227
Cow position: chrX:8925822-8925929 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 88, 65

Conread position: 123-208
Cow position: chrX:15545507-15545423 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 76
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 63, 0

Conread position: 123-222
Cow position: chrX:17726159-17726255 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 85
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 63, 0

Conread position: 133-227
Cow position: chrX:33153669-33153762 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 53, 0

Show alignments to all cow chromosomes.