Cow genome map

Conread name: rcki31_e15.y1

Conread position: 243-366
Cow position: chr12:27572288-27572166 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 246-438
Cow position: chr12:11056830-11057023 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 68, 20

Conread position: 247-365
Cow position: chr12:30605209-30605093 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 247-369
Cow position: chr12:5906012-5906133 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 94
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 247-374
Cow position: chr12:15260719-15260845 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 117, 19

Conread position: 247-438
Cow position: chr12:26575852-26576049 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 107, 20

Conread position: 247-439
Cow position: chr12:33948860-33949058 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 152
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 120, 19

Conread position: 247-444
Cow position: chr12:17001214-17001404 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 140
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 247-444
Cow position: chr12:19261151-19261358 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 155
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 119, 19

Conread position: 247-447
Cow position: chr12:14986705-14986913 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 156
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 119, 19

Conread position: 247-453
Cow position: chr12:30170625-30170824 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 161
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 39, 19

Conread position: 247-453
Cow position: chr12:37169990-37169777 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 150
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 116, 21

Conread position: 247-457
Cow position: chr12:37514325-37514103 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 159
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 108, 19

Conread position: 247-458
Cow position: chr12:17252242-17252026 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 117, 21

Conread position: 247-458
Cow position: chr12:25561326-25561544 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 167
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 120, 19

Conread position: 247-463
Cow position: chr12:5554378-5554154 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 159
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 120, 19

Conread position: 247-467
Cow position: chr12:5839700-5839476 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 163
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 82, 19

Conread position: 247-468
Cow position: chr12:18123625-18123853 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 174
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 119, 19

Conread position: 247-471
Cow position: chr12:9766921-9766689 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 166
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 132, 21

Conread position: 251-442
Cow position: chr12:17031576-17031770 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 102, 15

Conread position: 254-441
Cow position: chr12:18513966-18513766 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 152
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 68, 14

Conread position: 254-464
Cow position: chr12:23714638-23714855 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 113, 12

Conread position: 258-366
Cow position: chr12:16434905-16434800 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 259-442
Cow position: chr12:38804624-38804441 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 5, 139

Conread position: 262-436
Cow position: chr12:24116393-24116218 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 102, 134

Conread position: 262-444
Cow position: chr12:39465549-39465728 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 143
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 106, 0

Conread position: 262-455
Cow position: chr12:1333201-1333394 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 143
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 177, 91

Conread position: 263-365
Cow position: chr12:33319697-33319595 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 83
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 263-366
Cow position: chr12:27037479-27037376 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 86
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 263-366
Cow position: chr12:27357358-27357461 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 86
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 263-403
Cow position: chr12:32169512-32169648 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 263-428
Cow position: chr12:31517200-31517036 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 101, 131

Conread position: 263-430
Cow position: chr12:6465539-6465376 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 93, 31

Conread position: 263-430
Cow position: chr12:15122295-15122474 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 14, 0

Conread position: 263-442
Cow position: chr12:17879330-17879144 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 147
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 101, 52

Conread position: 263-442
Cow position: chr12:24273388-24273211 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 50, 26

Conread position: 263-442
Cow position: chr12:26217853-26217666 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 105, 139

Conread position: 263-442
Cow position: chr12:36544672-36544483 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 148
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 9, 84

Conread position: 263-443
Cow position: chr12:18583021-18582837 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 144
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 104, 33

Conread position: 263-444
Cow position: chr12:29731285-29731474 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 153
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 105, 0

Conread position: 263-446
Cow position: chr12:29316491-29316297 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 145
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 70, 0

Conread position: 263-446
Cow position: chr12:48578814-48579000 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 146
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 103, 94

Conread position: 263-448
Cow position: chr12:18518644-18518839 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 149
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 99, 142

Conread position: 263-448
Cow position: chr12:20776950-20776762 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 95, 31

Conread position: 263-448
Cow position: chr12:30210454-30210637 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 146
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 135, 0

Conread position: 263-453
Cow position: chr12:30805824-30806025 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 263-458
Cow position: chr12:25805161-25804969 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 149
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 93, 136

Conread position: 263-458
Cow position: chr12:40881939-40881743 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 94, 47

Conread position: 263-462
Cow position: chr12:29180644-29180855 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 144

Conread position: 263-463
Cow position: chr12:24032467-24032668 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 157
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 100, 136

Conread position: 263-463
Cow position: chr12:33129225-33129436 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 153
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 101, 145

Conread position: 263-464
Cow position: chr12:7884710-7884496 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 162
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 107, 144

Conread position: 263-464
Cow position: chr12:16605702-16605485 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 76, 0

Conread position: 264-444
Cow position: chr12:45092418-45092603 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 106, 0

Conread position: 265-444
Cow position: chr12:37728117-37728292 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 128
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 8, 25

Conread position: 265-452
Cow position: chr12:37732807-37732625 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 8, 25

Conread position: 266-446
Cow position: chr12:24166970-24166785 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 148
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 100, 135

Conread position: 266-451
Cow position: chr12:36994142-36993961 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 128
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 117, 0

Conread position: 266-462
Cow position: chr12:4719921-4720126 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 102, 137

Conread position: 266-467
Cow position: chr12:35368616-35368831 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 150
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 100, 0

Conread position: 266-470
Cow position: chr12:7110171-7110383 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 147
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 104, 0

Conread position: 266-472
Cow position: chr12:38774269-38774054 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 89, 138

Conread position: 267-441
Cow position: chr12:18577814-18577987 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 58, 125

Conread position: 267-442
Cow position: chr12:20439282-20439098 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 103, 132

Conread position: 267-446
Cow position: chr12:4512475-4512286 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 140
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 99, 142

Conread position: 267-452
Cow position: chr12:34161388-34161575 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 145
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 97, 135

Conread position: 267-457
Cow position: chr12:23446695-23446892 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 85, 81

Conread position: 267-460
Cow position: chr12:7902824-7902626 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 150
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 100, 90

Conread position: 267-470
Cow position: chr12:18103637-18103426 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 146
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 100, 0

Conread position: 269-442
Cow position: chr12:6469083-6468913 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 124, 0

Conread position: 270-430
Cow position: chr12:30194679-30194842 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 100, 129

Conread position: 270-452
Cow position: chr12:34466026-34465847 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 98, 0

Conread position: 271-453
Cow position: chr12:44203006-44202822 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 141
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 105, 38

Conread position: 271-456
Cow position: chr12:42285949-42286139 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 135
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 98, 106

Conread position: 272-464
Cow position: chr12:45782206-45782408 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 146
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 95, 131

Conread position: 272-465
Cow position: chr12:7960601-7960401 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 145
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 117, 55

Conread position: 274-446
Cow position: chr12:2964030-2964211 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 141
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 91, 18

Conread position: 274-468
Cow position: chr12:45126864-45126675 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 78, 0

Conread position: 276-467
Cow position: chr12:38679033-38679234 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 147
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 92, 0

Conread position: 277-467
Cow position: chr12:45039095-45039293 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 147
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 90, 133

Conread position: 280-467
Cow position: chr12:8710973-8711168 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 139
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 86, 20

Conread position: 281-454
Cow position: chr12:45535135-45534957 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 78, 67

Conread position: 283-430
Cow position: chr12:3615988-3616132 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 85, 0

Conread position: 283-436
Cow position: chr12:4801357-4801508 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 110, 0

Conread position: 283-451
Cow position: chr12:9229509-9229346 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 85, 0

Conread position: 283-462
Cow position: chr12:27803059-27802876 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 81, 113

Conread position: 284-440
Cow position: chr12:6666562-6666720 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 126
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 80, 118

Conread position: 284-442
Cow position: chr12:6687885-6688046 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 70, 111

Conread position: 286-461
Cow position: chr12:17702035-17701854 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 52, 113

Conread position: 286-470
Cow position: chr12:43869205-43869031 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 132
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 87, 0

Conread position: 287-442
Cow position: chr12:40309315-40309473 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 80, 14

Conread position: 290-463
Cow position: chr12:20654480-20654298 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 72, 121

Conread position: 291-442
Cow position: chr12:44822292-44822443 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 76, 23

Show alignments to all cow chromosomes.