Cow genome map
| Conread name: | rcki31_e15.y1 |
| Conread position: | 239-442 |
| Cow position: | chr20:7624218-7624017 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 105, 12 |
| Conread position: | 241-438 |
| Cow position: | chr20:3148716-3148919 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 129, 13 |
| Conread position: | 241-448 |
| Cow position: | chr20:7738199-7737986 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 122, 13 |
| Conread position: | 241-451 |
| Cow position: | chr20:8702883-8702678 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 113, 10 |
| Conread position: | 241-451 |
| Cow position: | chr20:21204390-21204585 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 201, 12 |
| Conread position: | 246-384 |
| Cow position: | chr20:19363325-19363188 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 128, 8 |
| Conread position: | 246-472 |
| Cow position: | chr20:24069843-24070074 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 116, 7 |
| Conread position: | 247-365 |
| Cow position: | chr20:8817454-8817337 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 247-440 |
| Cow position: | chr20:25009595-25009393 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 116, 19 |
| Conread position: | 247-442 |
| Cow position: | chr20:398269-398070 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 123, 19 |
| Conread position: | 247-442 |
| Cow position: | chr20:33623515-33623317 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 104, 20 |
| Conread position: | 247-444 |
| Cow position: | chr20:5702761-5702966 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 120, 19 |
| Conread position: | 247-444 |
| Cow position: | chr20:19636139-19635934 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 117, 19 |
| Conread position: | 247-446 |
| Cow position: | chr20:26077631-26077446 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 247-447 |
| Cow position: | chr20:12581917-12581709 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 119, 19 |
| Conread position: | 247-448 |
| Cow position: | chr20:28605247-28605454 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 120, 19 |
| Conread position: | 247-452 |
| Cow position: | chr20:24097038-24097249 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 131, 19 |
| Conread position: | 247-457 |
| Cow position: | chr20:2298749-2298541 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 120, 19 |
| Conread position: | 247-460 |
| Cow position: | chr20:8308057-8308265 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 195, 19 |
| Conread position: | 247-463 |
| Cow position: | chr20:3564197-3564415 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 123, 19 |
| Conread position: | 247-465 |
| Cow position: | chr20:22235344-22235563 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 56, 20 |
| Conread position: | 248-369 |
| Cow position: | chr20:19459627-19459507 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 248-381 |
| Cow position: | chr20:21815599-21815731 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 249-460 |
| Cow position: | chr20:1640416-1640208 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 15, 69 |
| Conread position: | 250-463 |
| Cow position: | chr20:27407847-27407632 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 253-463 |
| Cow position: | chr20:26041055-26040835 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 104, 13 |
| Conread position: | 254-361 |
| Cow position: | chr20:11542244-11542137 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 86, 12 |
| Conread position: | 255-459 |
| Cow position: | chr20:10235876-10236076 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 158 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 256-430 |
| Cow position: | chr20:26905721-26905892 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 111, 10 |
| Conread position: | 256-469 |
| Cow position: | chr20:21901873-21902072 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 262-441 |
| Cow position: | chr20:3255087-3255275 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 263-369 |
| Cow position: | chr20:36207866-36207972 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 263-373 |
| Cow position: | chr20:9412540-9412650 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 90 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 263-420 |
| Cow position: | chr20:23792656-23792814 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 98, 129 |
| Conread position: | 263-431 |
| Cow position: | chr20:13752275-13752444 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 23, 142 |
| Conread position: | 263-432 |
| Cow position: | chr20:25162073-25161899 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 96, 138 |
| Conread position: | 263-439 |
| Cow position: | chr20:28441379-28441558 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 263-440 |
| Cow position: | chr20:7438799-7438617 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 97, 140 |
| Conread position: | 263-440 |
| Cow position: | chr20:36312456-36312271 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 263-442 |
| Cow position: | chr20:32847397-32847585 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 263-443 |
| Cow position: | chr20:4786958-4786789 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 36, 18 |
| Conread position: | 263-443 |
| Cow position: | chr20:33532355-33532533 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 263-447 |
| Cow position: | chr20:13805368-13805563 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 143 |
| Conread position: | 263-447 |
| Cow position: | chr20:19834778-19834584 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 263-453 |
| Cow position: | chr20:2487197-2487380 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 177, 29 |
| Conread position: | 263-457 |
| Cow position: | chr20:25351352-25351170 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 263-459 |
| Cow position: | chr20:20590249-20590046 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 102, 140 |
| Conread position: | 263-459 |
| Cow position: | chr20:22265200-22265009 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 263-461 |
| Cow position: | chr20:8547120-8547322 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 64, 42 |
| Conread position: | 263-464 |
| Cow position: | chr20:7756570-7756373 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 138, 35 |
| Conread position: | 265-438 |
| Cow position: | chr20:4334476-4334300 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 81, 133 |
| Conread position: | 266-441 |
| Cow position: | chr20:14917340-14917512 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 266-455 |
| Cow position: | chr20:14759610-14759419 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 108, 132 |
| Conread position: | 266-468 |
| Cow position: | chr20:2316370-2316159 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 101, 138 |
| Conread position: | 266-469 |
| Cow position: | chr20:37273053-37273264 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 92, 135 |
| Conread position: | 266-471 |
| Cow position: | chr20:35146076-35146287 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 90, 82 |
| Conread position: | 267-465 |
| Cow position: | chr20:14806943-14807147 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 99, 133 |
| Conread position: | 268-471 |
| Cow position: | chr20:8556212-8555998 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 99, 143 |
| Conread position: | 269-448 |
| Cow position: | chr20:35710232-35710406 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 61, 105 |
| Conread position: | 269-472 |
| Cow position: | chr20:11359574-11359366 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 270-366 |
| Cow position: | chr20:38089972-38090068 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 80 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 270-442 |
| Cow position: | chr20:38934996-38934824 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 94, 123 |
| Conread position: | 270-459 |
| Cow position: | chr20:35201757-35201572 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 270-460 |
| Cow position: | chr20:20158195-20158388 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 98, 132 |
| Conread position: | 271-442 |
| Cow position: | chr20:5991411-5991582 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 83, 122 |
| Conread position: | 271-471 |
| Cow position: | chr20:1824568-1824360 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 71, 137 |
| Conread position: | 274-362 |
| Cow position: | chr20:32463461-32463373 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 77 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 274-463 |
| Cow position: | chr20:13617289-13617473 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 280-444 |
| Cow position: | chr20:26387530-26387700 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 79, 130 |
| Conread position: | 281-458 |
| Cow position: | chr20:24491958-24491767 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 43, 11 |
| Conread position: | 282-442 |
| Cow position: | chr20:22065137-22065303 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 283-438 |
| Cow position: | chr20:22922990-22923152 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 283-457 |
| Cow position: | chr20:4755761-4755577 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 87, 126 |
| Conread position: | 283-465 |
| Cow position: | chr20:34108177-34108354 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 284-437 |
| Cow position: | chr20:14572290-14572140 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 284-467 |
| Cow position: | chr20:11499081-11499271 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 68, 117 |
| Conread position: | 285-462 |
| Cow position: | chr20:4789777-4789599 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 67, 39 |
| Conread position: | 286-471 |
| Cow position: | chr20:27315053-27315245 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 83, 116 |
| Conread position: | 288-444 |
| Cow position: | chr20:18618696-18618842 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 293-470 |
| Cow position: | chr20:11548642-11548458 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 59, 55 |
| Conread position: | 300-465 |
| Cow position: | chr20:311409-311569 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 140, 68 |
| Conread position: | 304-455 |
| Cow position: | chr20:38061673-38061518 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 66, 95 |
| Conread position: | 310-458 |
| Cow position: | chr20:21169663-21169510 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 57, 91 |
| Conread position: | 310-470 |
| Cow position: | chr20:28804465-28804310 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 135, 46 |
Show alignments to all cow chromosomes.