Cow genome map

Conread name: rcki31_e15.y1

Conread position: 231-470
Cow position: chr21:9710689-9710461 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 171
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 31, 64

Conread position: 239-442
Cow position: chr21:7673172-7673376 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 13, 28

Conread position: 239-466
Cow position: chr21:11182604-11182837 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 173
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 103, 15

Conread position: 241-462
Cow position: chr21:36682378-36682608 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 164
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 129, 12

Conread position: 246-366
Cow position: chr21:33350798-33350917 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 246-453
Cow position: chr21:44214184-44214385 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 160
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 20, 0

Conread position: 246-460
Cow position: chr21:25764693-25764896 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 21, 0

Conread position: 247-366
Cow position: chr21:19360118-19360000 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 247-366
Cow position: chr21:30980519-30980402 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 247-439
Cow position: chr21:24875410-24875612 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 40, 19

Conread position: 247-440
Cow position: chr21:17252920-17252716 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 116, 19

Conread position: 247-441
Cow position: chr21:28030347-28030541 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 53, 19

Conread position: 247-442
Cow position: chr21:641645-641847 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 162
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 120, 19

Conread position: 247-444
Cow position: chr21:8426504-8426708 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 154
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 123, 22

Conread position: 247-444
Cow position: chr21:20163766-20163973 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 157
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 119, 19

Conread position: 247-446
Cow position: chr21:11740061-11739854 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 121, 19

Conread position: 247-447
Cow position: chr21:802259-802055 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 158
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 132, 19

Conread position: 247-448
Cow position: chr21:25012140-25012347 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 120, 19

Conread position: 247-457
Cow position: chr21:33982749-33982535 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 156
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 122, 21

Conread position: 247-460
Cow position: chr21:16569959-16570168 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 149, 19

Conread position: 247-460
Cow position: chr21:39393806-39394030 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 165
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 93, 22

Conread position: 247-466
Cow position: chr21:15012497-15012716 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 171
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 120, 19

Conread position: 247-472
Cow position: chr21:24598716-24598936 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 161
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 26, 19

Conread position: 248-373
Cow position: chr21:5342035-5341911 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 248-442
Cow position: chr21:674744-674931 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 142
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 18, 0

Conread position: 248-470
Cow position: chr21:22861061-22861284 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 160
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 97, 18

Conread position: 253-440
Cow position: chr21:8349395-8349583 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 117, 14

Conread position: 257-430
Cow position: chr21:14760632-14760808 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 124
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 113, 0

Conread position: 259-447
Cow position: chr21:16498589-16498783 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 148
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 107, 7

Conread position: 259-466
Cow position: chr21:4399871-4400078 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 151
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 5, 138

Conread position: 262-442
Cow position: chr21:643397-643583 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 140
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 114, 7

Conread position: 262-442
Cow position: chr21:26147150-26147322 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 129
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 262-444
Cow position: chr21:42135544-42135354 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 105, 0

Conread position: 262-459
Cow position: chr21:82140-82339 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 121, 5

Conread position: 263-441
Cow position: chr21:22850994-22851177 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 147
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 99, 15

Conread position: 263-442
Cow position: chr21:13883554-13883740 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 144
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 62, 142

Conread position: 263-443
Cow position: chr21:30657943-30658125 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 145
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 100, 132

Conread position: 263-444
Cow position: chr21:11644893-11644702 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 145
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 100, 143

Conread position: 263-444
Cow position: chr21:19868882-19868697 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 147
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 103, 134

Conread position: 263-451
Cow position: chr21:6851245-6851437 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 151
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 94, 139

Conread position: 263-452
Cow position: chr21:27229718-27229530 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 147
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 132, 31

Conread position: 263-452
Cow position: chr21:38121174-38121355 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 150
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 147, 100

Conread position: 263-453
Cow position: chr21:12461894-12461695 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 58, 149

Conread position: 263-453
Cow position: chr21:30222418-30222617 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 151
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 97, 140

Conread position: 263-458
Cow position: chr21:12104438-12104632 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 26, 129

Conread position: 263-460
Cow position: chr21:46451881-46451692 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 146
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 123, 0

Conread position: 263-462
Cow position: chr21:33414015-33413813 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 101, 0

Conread position: 263-466
Cow position: chr21:235978-236177 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 148
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 180, 128

Conread position: 263-470
Cow position: chr21:32559292-32559080 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 163
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 103, 138

Conread position: 266-442
Cow position: chr21:42209553-42209382 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 124
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 108, 0

Conread position: 266-448
Cow position: chr21:32339664-32339476 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 107, 0

Conread position: 266-450
Cow position: chr21:868848-868649 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 101, 194

Conread position: 266-452
Cow position: chr21:745251-745444 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 87, 63

Conread position: 266-453
Cow position: chr21:40134233-40134421 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 143
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 91, 82

Conread position: 266-458
Cow position: chr21:8206848-8207036 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 141
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 54, 0

Conread position: 266-465
Cow position: chr21:20174394-20174599 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 157
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 97, 134

Conread position: 266-471
Cow position: chr21:34654149-34654364 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 165
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 100, 135

Conread position: 267-442
Cow position: chr21:23586959-23587135 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 103, 77

Conread position: 267-446
Cow position: chr21:41590488-41590299 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 100, 0

Conread position: 267-472
Cow position: chr21:27863436-27863225 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 149
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 116, 81

Conread position: 268-371
Cow position: chr21:36795681-36795784 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 84
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 268-455
Cow position: chr21:6998025-6998218 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 138
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 102, 138

Conread position: 269-463
Cow position: chr21:40059109-40059302 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 114, 134

Conread position: 270-453
Cow position: chr21:28244550-28244741 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 100, 0

Conread position: 273-444
Cow position: chr21:14126360-14126537 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 115, 0

Conread position: 274-444
Cow position: chr21:30592225-30592049 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 92, 127

Conread position: 276-452
Cow position: chr21:11678226-11678050 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 90, 120

Conread position: 280-457
Cow position: chr21:43642628-43642796 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 63, 0

Conread position: 281-458
Cow position: chr21:48234075-48233896 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 9, 18

Conread position: 283-430
Cow position: chr21:41287700-41287545 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 84, 118

Conread position: 283-438
Cow position: chr21:49353729-49353883 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 84, 116

Conread position: 283-444
Cow position: chr21:37837973-37837812 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 117
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 90, 111

Conread position: 283-444
Cow position: chr21:40930382-40930212 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 83, 122

Conread position: 283-449
Cow position: chr21:5898309-5898139 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 81, 122

Conread position: 283-452
Cow position: chr21:6945468-6945635 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 161, 85

Conread position: 283-456
Cow position: chr21:5427033-5427204 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 81, 50

Conread position: 283-472
Cow position: chr21:807627-807426 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 145
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 71, 107

Conread position: 284-440
Cow position: chr21:21158905-21159064 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 84, 114

Conread position: 284-465
Cow position: chr21:29011876-29011690 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 73, 19

Conread position: 285-462
Cow position: chr21:30205278-30205113 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 85, 113

Conread position: 286-439
Cow position: chr21:31462658-31462817 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 80, 115

Conread position: 286-458
Cow position: chr21:44565625-44565451 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 104, 10

Conread position: 286-467
Cow position: chr21:742373-742561 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 146
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 81, 117

Conread position: 290-460
Cow position: chr21:18495321-18495492 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 75, 42

Conread position: 290-461
Cow position: chr21:2785393-2785219 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 76, 108

Conread position: 292-444
Cow position: chr21:36398461-36398305 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 75, 107

Conread position: 298-458
Cow position: chr21:44861395-44861235 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 66, 26

Conread position: 301-472
Cow position: chr21:11298678-11298844 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 20, 71

Conread position: 305-469
Cow position: chr21:12075045-12074886 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 35, 59

Conread position: 311-450
Cow position: chr21:13395719-13395851 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 82, 0

Conread position: 311-471
Cow position: chr21:42341817-42341648 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 56, 92

Conread position: 311-472
Cow position: chr21:30368197-30368369 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 55, 91

Show alignments to all cow chromosomes.