Cow genome map
| Conread name: | rcki31_e15.y1 |
| Conread position: | 236-442 |
| Cow position: | chr29:19363692-19363906 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 6, 25 |
| Conread position: | 240-449 |
| Cow position: | chr29:7624165-7624370 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 136, 11 |
| Conread position: | 241-450 |
| Cow position: | chr29:28197019-28196814 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 134, 10 |
| Conread position: | 241-456 |
| Cow position: | chr29:29308585-29308369 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 123, 25 |
| Conread position: | 241-469 |
| Cow position: | chr29:34773750-34773528 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 86, 13 |
| Conread position: | 242-373 |
| Cow position: | chr29:20903304-20903173 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 246-447 |
| Cow position: | chr29:10058544-10058340 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 99, 20 |
| Conread position: | 247-388 |
| Cow position: | chr29:24578855-24578997 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 113, 19 |
| Conread position: | 247-412 |
| Cow position: | chr29:22723593-22723767 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 119, 19 |
| Conread position: | 247-423 |
| Cow position: | chr29:23825218-23825033 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 120, 19 |
| Conread position: | 247-431 |
| Cow position: | chr29:39111319-39111137 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 120, 19 |
| Conread position: | 247-438 |
| Cow position: | chr29:8125367-8125165 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 46, 19 |
| Conread position: | 247-443 |
| Cow position: | chr29:17109952-17110152 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 119, 20 |
| Conread position: | 247-446 |
| Cow position: | chr29:9378629-9378837 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 119, 21 |
| Conread position: | 247-448 |
| Cow position: | chr29:25737422-25737216 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 120, 19 |
| Conread position: | 247-463 |
| Cow position: | chr29:5063137-5063362 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 109, 19 |
| Conread position: | 247-465 |
| Cow position: | chr29:22729560-22729786 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 116, 19 |
| Conread position: | 257-447 |
| Cow position: | chr29:22028950-22028758 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 86, 10 |
| Conread position: | 259-453 |
| Cow position: | chr29:12625972-12625789 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 259-456 |
| Cow position: | chr29:17804539-17804741 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 107, 7 |
| Conread position: | 259-460 |
| Cow position: | chr29:31981835-31982037 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 107, 7 |
| Conread position: | 261-463 |
| Cow position: | chr29:34359816-34359609 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 100, 141 |
| Conread position: | 262-366 |
| Cow position: | chr29:17022156-17022260 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 87 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 263-372 |
| Cow position: | chr29:5892852-5892961 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 263-425 |
| Cow position: | chr29:742642-742489 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 263-441 |
| Cow position: | chr29:43328651-43328829 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 103, 135 |
| Conread position: | 263-442 |
| Cow position: | chr29:26275617-26275799 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 99, 31 |
| Conread position: | 263-443 |
| Cow position: | chr29:8190193-8190017 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 263-446 |
| Cow position: | chr29:35501647-35501463 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 90, 113 |
| Conread position: | 263-448 |
| Cow position: | chr29:41811580-41811405 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 263-458 |
| Cow position: | chr29:22162242-22162049 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 113, 136 |
| Conread position: | 263-458 |
| Cow position: | chr29:22167071-22166874 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 96, 130 |
| Conread position: | 263-458 |
| Cow position: | chr29:40117579-40117779 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 107, 54 |
| Conread position: | 263-459 |
| Cow position: | chr29:22613437-22613636 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 77, 137 |
| Conread position: | 263-464 |
| Cow position: | chr29:29769344-29769135 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 48, 33 |
| Conread position: | 263-466 |
| Cow position: | chr29:19949317-19949527 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 103, 31 |
| Conread position: | 263-467 |
| Cow position: | chr29:7290783-7290994 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 105, 152 |
| Conread position: | 265-472 |
| Cow position: | chr29:40351066-40350853 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 75, 24 |
| Conread position: | 266-366 |
| Cow position: | chr29:34687845-34687945 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 83 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 266-432 |
| Cow position: | chr29:4423429-4423262 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 98, 130 |
| Conread position: | 266-436 |
| Cow position: | chr29:5789039-5789207 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 97, 37 |
| Conread position: | 266-440 |
| Cow position: | chr29:8686340-8686506 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 168, 91 |
| Conread position: | 266-447 |
| Cow position: | chr29:19762281-19762466 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 101, 27 |
| Conread position: | 266-448 |
| Cow position: | chr29:16278998-16279181 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 100, 23 |
| Conread position: | 266-453 |
| Cow position: | chr29:31651421-31651611 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 36, 134 |
| Conread position: | 266-458 |
| Cow position: | chr29:35292102-35292302 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 32, 140 |
| Conread position: | 266-459 |
| Cow position: | chr29:31934389-31934589 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 110, 183 |
| Conread position: | 267-439 |
| Cow position: | chr29:3292959-3293138 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 107, 81 |
| Conread position: | 267-442 |
| Cow position: | chr29:36781293-36781112 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 98, 134 |
| Conread position: | 267-444 |
| Cow position: | chr29:9622681-9622508 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 268-470 |
| Cow position: | chr29:43441484-43441282 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 7, 129 |
| Conread position: | 269-379 |
| Cow position: | chr29:23155239-23155347 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 270-442 |
| Cow position: | chr29:4874865-4874692 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 114, 57 |
| Conread position: | 270-456 |
| Cow position: | chr29:32215723-32215916 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 94, 14 |
| Conread position: | 274-442 |
| Cow position: | chr29:36952278-36952114 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 92, 28 |
| Conread position: | 274-447 |
| Cow position: | chr29:38980055-38979877 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 96, 74 |
| Conread position: | 274-453 |
| Cow position: | chr29:41112863-41112682 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 94, 131 |
| Conread position: | 274-459 |
| Cow position: | chr29:28066505-28066697 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 93, 83 |
| Conread position: | 276-461 |
| Cow position: | chr29:936227-936420 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 94, 127 |
| Conread position: | 281-430 |
| Cow position: | chr29:16536022-16536175 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 281-471 |
| Cow position: | chr29:17282093-17282290 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 86, 56 |
| Conread position: | 283-438 |
| Cow position: | chr29:10653359-10653516 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 84, 114 |
| Conread position: | 283-442 |
| Cow position: | chr29:8862453-8862301 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 284-442 |
| Cow position: | chr29:28979474-28979318 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 82, 117 |
| Conread position: | 284-461 |
| Cow position: | chr29:4070652-4070834 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 83, 119 |
| Conread position: | 284-472 |
| Cow position: | chr29:28195493-28195304 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 92, 116 |
| Conread position: | 287-464 |
| Cow position: | chr29:14761485-14761668 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 80, 133 |
| Conread position: | 288-470 |
| Cow position: | chr29:13063891-13064081 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 85, 126 |
| Conread position: | 289-465 |
| Cow position: | chr29:23678742-23678920 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 78, 108 |
| Conread position: | 290-453 |
| Cow position: | chr29:21592739-21592908 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 101 |
| Conread position: | 290-458 |
| Cow position: | chr29:7414535-7414706 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 21, 121 |
| Conread position: | 290-460 |
| Cow position: | chr29:396440-396618 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 76, 118 |
| Conread position: | 297-458 |
| Cow position: | chr29:22776120-22776289 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 105 |
| Conread position: | 299-455 |
| Cow position: | chr29:24660728-24660889 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 58, 93 |
| Conread position: | 299-471 |
| Cow position: | chr29:40112425-40112608 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 68, 105 |
| Conread position: | 300-455 |
| Cow position: | chr29:29296438-29296600 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 75, 106 |
| Conread position: | 302-465 |
| Cow position: | chr29:17718973-17718811 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 31, 49 |
| Conread position: | 310-442 |
| Cow position: | chr29:25669148-25669281 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 50, 86 |
| Conread position: | 313-458 |
| Cow position: | chr29:31594089-31593945 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 34 |
Show alignments to all cow chromosomes.