Cow genome map
| Conread name: | rcki31_k1.y1 |
| Conread position: | 176-525 |
| Cow position: | chr1:61543214-61542857 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 52, 10 |
| Conread position: | 330-525 |
| Cow position: | chr1:93810295-93810491 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 76, 15 |
| Conread position: | 343-521 |
| Cow position: | chr1:69695114-69694935 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 64, 145 |
| Conread position: | 348-483 |
| Cow position: | chr1:87072580-87072719 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 348-495 |
| Cow position: | chr1:26702324-26702171 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 348-496 |
| Cow position: | chr1:81471015-81471166 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 117 |
| Conread position: | 348-525 |
| Cow position: | chr1:39069072-39068894 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 59, 73 |
| Conread position: | 348-525 |
| Cow position: | chr1:75141886-75142059 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 14, 44 |
| Conread position: | 349-496 |
| Cow position: | chr1:22448703-22448548 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 349-502 |
| Cow position: | chr1:68763799-68763645 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 349-520 |
| Cow position: | chr1:53369967-53370140 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 56, 44 |
| Conread position: | 349-521 |
| Cow position: | chr1:45555248-45555424 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 58, 83 |
| Conread position: | 349-521 |
| Cow position: | chr1:81868842-81868671 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 349-524 |
| Cow position: | chr1:24445744-24445567 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 58, 146 |
| Conread position: | 349-524 |
| Cow position: | chr1:48444310-48444133 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 349-524 |
| Cow position: | chr1:79165202-79165022 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 160 |
| Conread position: | 349-525 |
| Cow position: | chr1:6788402-6788221 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 349-525 |
| Cow position: | chr1:33206987-33206818 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 160, 57 |
| Conread position: | 349-525 |
| Cow position: | chr1:43703291-43703471 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 349-525 |
| Cow position: | chr1:47886600-47886418 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 58, 12 |
| Conread position: | 349-525 |
| Cow position: | chr1:50931092-50930917 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 56, 49 |
| Conread position: | 349-525 |
| Cow position: | chr1:51445763-51445948 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 143 |
| Conread position: | 349-525 |
| Cow position: | chr1:85550194-85550016 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 349-525 |
| Cow position: | chr1:102266384-102266206 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 351-521 |
| Cow position: | chr1:34856746-34856570 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 351-521 |
| Cow position: | chr1:74927770-74927942 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 54, 38 |
| Conread position: | 352-521 |
| Cow position: | chr1:98310954-98311128 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 352-525 |
| Cow position: | chr1:72035038-72034862 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 53, 113 |
| Conread position: | 352-525 |
| Cow position: | chr1:72105298-72105468 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 54, 131 |
| Conread position: | 353-525 |
| Cow position: | chr1:85596829-85597000 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 132 |
| Conread position: | 354-518 |
| Cow position: | chr1:68951515-68951682 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 6, 96 |
| Conread position: | 354-521 |
| Cow position: | chr1:101946824-101946656 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 10, 92 |
| Conread position: | 354-525 |
| Cow position: | chr1:20667854-20667680 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 354-525 |
| Cow position: | chr1:56477476-56477654 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 356-472 |
| Cow position: | chr1:8349424-8349309 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 81, 91 |
| Conread position: | 356-485 |
| Cow position: | chr1:100706024-100706153 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 48, 87 |
| Conread position: | 356-494 |
| Cow position: | chr1:51684692-51684838 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 356-505 |
| Cow position: | chr1:68827015-68826862 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 356-517 |
| Cow position: | chr1:76470546-76470707 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 93 |
| Conread position: | 356-518 |
| Cow position: | chr1:6304972-6304809 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 48, 87 |
| Conread position: | 356-518 |
| Cow position: | chr1:45288981-45288816 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 356-518 |
| Cow position: | chr1:93528589-93528752 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 50, 132 |
| Conread position: | 356-519 |
| Cow position: | chr1:53374322-53374489 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 110 |
| Conread position: | 356-521 |
| Cow position: | chr1:53622851-53623014 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 51, 92 |
| Conread position: | 356-522 |
| Cow position: | chr1:43340721-43340558 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 76 |
| Conread position: | 356-524 |
| Cow position: | chr1:23512765-23512598 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 6, 46 |
| Conread position: | 356-524 |
| Cow position: | chr1:64572404-64572576 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 356-525 |
| Cow position: | chr1:2976103-2975932 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 49, 77 |
| Conread position: | 356-525 |
| Cow position: | chr1:3323762-3323930 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 82, 46 |
| Conread position: | 356-525 |
| Cow position: | chr1:8984794-8984620 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 65 |
| Conread position: | 356-525 |
| Cow position: | chr1:49317606-49317434 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 6, 94 |
| Conread position: | 356-525 |
| Cow position: | chr1:52052830-52052655 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 51, 133 |
| Conread position: | 356-525 |
| Cow position: | chr1:54156841-54156673 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 356-525 |
| Cow position: | chr1:54199491-54199317 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 356-525 |
| Cow position: | chr1:54258455-54258629 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 52 |
| Conread position: | 356-525 |
| Cow position: | chr1:55429063-55428894 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 48, 12 |
| Conread position: | 356-525 |
| Cow position: | chr1:57297367-57297544 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 356-525 |
| Cow position: | chr1:63434915-63434744 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 356-525 |
| Cow position: | chr1:64804211-64804040 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 84, 56 |
| Conread position: | 356-525 |
| Cow position: | chr1:69264707-69264870 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 83, 35 |
| Conread position: | 356-525 |
| Cow position: | chr1:71119409-71119583 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 23 |
| Conread position: | 356-525 |
| Cow position: | chr1:77683248-77683414 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 51, 82 |
| Conread position: | 356-525 |
| Cow position: | chr1:90868550-90868379 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 356-525 |
| Cow position: | chr1:90976194-90976026 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 91 |
| Conread position: | 357-490 |
| Cow position: | chr1:38544571-38544437 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 43 |
| Conread position: | 357-524 |
| Cow position: | chr1:26729614-26729779 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 85, 41 |
| Conread position: | 357-524 |
| Cow position: | chr1:98511821-98511988 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 50, 9 |
| Conread position: | 357-525 |
| Cow position: | chr1:63390879-63390705 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 358-521 |
| Cow position: | chr1:35162302-35162468 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 361-525 |
| Cow position: | chr1:44506864-44507035 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 361-525 |
| Cow position: | chr1:99609264-99609430 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 45, 121 |
| Conread position: | 365-525 |
| Cow position: | chr1:55818961-55819113 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 368-521 |
| Cow position: | chr1:4032531-4032690 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 368-523 |
| Cow position: | chr1:97696645-97696804 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 38, 136 |
Show alignments to all cow chromosomes.