Cow genome map
| Conread name: | rcki31_k1.y1 |
| Conread position: | 41-205 |
| Cow position: | chr19:35539999-35540166 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 65, 15 |
| Conread position: | 41-525 |
| Cow position: | chr19:19490246-19489787 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 317 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 217, 66 |
| Conread position: | 125-524 |
| Cow position: | chr19:42886600-42886998 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 105, 44 |
| Conread position: | 338-525 |
| Cow position: | chr19:2221226-2221030 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 339-523 |
| Cow position: | chr19:21043224-21043411 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 67, 174 |
| Conread position: | 345-515 |
| Cow position: | chr19:25673656-25673487 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 60, 19 |
| Conread position: | 348-520 |
| Cow position: | chr19:15863176-15863011 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 56, 84 |
| Conread position: | 349-476 |
| Cow position: | chr19:10786503-10786372 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 349-502 |
| Cow position: | chr19:44757747-44757597 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 90, 36 |
| Conread position: | 349-515 |
| Cow position: | chr19:25041372-25041202 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 10, 137 |
| Conread position: | 349-525 |
| Cow position: | chr19:10080935-10081120 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 349-525 |
| Cow position: | chr19:20935620-20935799 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 349-525 |
| Cow position: | chr19:47118629-47118455 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 57, 151 |
| Conread position: | 351-525 |
| Cow position: | chr19:6079491-6079316 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 53, 156 |
| Conread position: | 351-525 |
| Cow position: | chr19:39385164-39384996 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 352-525 |
| Cow position: | chr19:20622526-20622699 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 88, 63 |
| Conread position: | 356-472 |
| Cow position: | chr19:33932276-33932156 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 6, 95 |
| Conread position: | 356-472 |
| Cow position: | chr19:41946372-41946487 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 21, 49 |
| Conread position: | 356-499 |
| Cow position: | chr19:47187180-47187036 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 356-503 |
| Cow position: | chr19:8864621-8864772 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 356-503 |
| Cow position: | chr19:46918723-46918873 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 356-510 |
| Cow position: | chr19:42205806-42205956 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 51, 86 |
| Conread position: | 356-511 |
| Cow position: | chr19:35540170-35540326 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 50, 81 |
| Conread position: | 356-521 |
| Cow position: | chr19:11424439-11424274 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 6, 73 |
| Conread position: | 356-521 |
| Cow position: | chr19:31535999-31536168 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 356-521 |
| Cow position: | chr19:31595175-31595342 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 51, 33 |
| Conread position: | 356-521 |
| Cow position: | chr19:52750886-52750717 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 356-525 |
| Cow position: | chr19:4800616-4800787 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 356-525 |
| Cow position: | chr19:5913083-5912915 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 136 |
| Conread position: | 356-525 |
| Cow position: | chr19:11191743-11191575 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 81 |
| Conread position: | 356-525 |
| Cow position: | chr19:19919588-19919416 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 356-525 |
| Cow position: | chr19:21816837-21817008 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 147 |
| Conread position: | 356-525 |
| Cow position: | chr19:22134271-22134107 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 49, 87 |
| Conread position: | 356-525 |
| Cow position: | chr19:22450057-22449881 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 356-525 |
| Cow position: | chr19:30886269-30886441 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 356-525 |
| Cow position: | chr19:35380675-35380507 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 65, 13 |
| Conread position: | 356-525 |
| Cow position: | chr19:40051518-40051348 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 6, 87 |
| Conread position: | 356-525 |
| Cow position: | chr19:47859440-47859270 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 50, 8 |
| Conread position: | 358-525 |
| Cow position: | chr19:25526156-25526329 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 49, 27 |
| Conread position: | 358-525 |
| Cow position: | chr19:36845127-36845295 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 80, 34 |
| Conread position: | 361-524 |
| Cow position: | chr19:2734329-2734494 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 361-525 |
| Cow position: | chr19:14347891-14348058 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 45, 126 |
| Conread position: | 364-525 |
| Cow position: | chr19:7637357-7637190 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 364-525 |
| Cow position: | chr19:11442864-11443036 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 364-525 |
| Cow position: | chr19:33912745-33912579 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 365-524 |
| Cow position: | chr19:52215046-52215205 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 368-525 |
| Cow position: | chr19:729859-729701 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 37, 135 |
| Conread position: | 375-525 |
| Cow position: | chr19:41024116-41024269 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
Show alignments to all cow chromosomes.