Cow genome map

Conread name: rcki31_k1.y1

Conread position: 340-517
Cow position: chr21:28919591-28919411 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 66, 16

Conread position: 341-518
Cow position: chr21:37014470-37014293 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 19, 106

Conread position: 341-525
Cow position: chr21:41597754-41597931 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 65, 94

Conread position: 346-525
Cow position: chr21:11250817-11250989 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 60, 91

Conread position: 347-521
Cow position: chr21:30607150-30606971 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 60, 0

Conread position: 347-525
Cow position: chr21:7377991-7377806 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 348-525
Cow position: chr21:20418745-20418562 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 11, 0

Conread position: 348-525
Cow position: chr21:28244409-28244590 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 128
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 58, 139

Conread position: 349-496
Cow position: chr21:1511232-1511384 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 349-521
Cow position: chr21:40134101-40134273 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 123
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 58, 99

Conread position: 349-524
Cow position: chr21:7581965-7581786 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 57, 93

Conread position: 349-524
Cow position: chr21:10263974-10264152 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 57, 46

Conread position: 349-524
Cow position: chr21:11359980-11360155 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 122
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 349-524
Cow position: chr21:23586821-23587001 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 349-525
Cow position: chr21:12462029-12461847 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 57, 0

Conread position: 349-525
Cow position: chr21:15911340-15911520 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 25, 161

Conread position: 349-525
Cow position: chr21:16152377-16152561 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 58, 0

Conread position: 349-525
Cow position: chr21:26244861-26245034 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 79, 0

Conread position: 349-525
Cow position: chr21:38664579-38664759 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 57, 13

Conread position: 349-525
Cow position: chr21:41621065-41621245 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 129
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 60, 0

Conread position: 349-525
Cow position: chr21:47764174-47763997 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 58, 87

Conread position: 350-519
Cow position: chr21:16187867-16187693 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 351-521
Cow position: chr21:20152897-20153072 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 55, 0

Conread position: 351-525
Cow position: chr21:10410163-10410342 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 55, 112

Conread position: 355-496
Cow position: chr21:21907483-21907339 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 7, 127

Conread position: 356-471
Cow position: chr21:14760522-14760640 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 82, 0

Conread position: 356-472
Cow position: chr21:27743695-27743816 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 356-485
Cow position: chr21:38449499-38449365 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 356-496
Cow position: chr21:8235606-8235464 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 50, 84

Conread position: 356-496
Cow position: chr21:18790611-18790471 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 50, 92

Conread position: 356-516
Cow position: chr21:33562962-33563115 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 91, 45

Conread position: 356-521
Cow position: chr21:10004939-10004770 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 52, 162

Conread position: 356-521
Cow position: chr21:33997279-33997111 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 87, 0

Conread position: 356-522
Cow position: chr21:30256316-30256152 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 93, 42

Conread position: 356-525
Cow position: chr21:395818-395987 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 122
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 49, 87

Conread position: 356-525
Cow position: chr21:868977-868804 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 51, 63

Conread position: 356-525
Cow position: chr21:957621-957792 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 53, 24

Conread position: 356-525
Cow position: chr21:5426889-5427060 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 120
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 356-525
Cow position: chr21:10001023-10001195 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 49, 150

Conread position: 356-525
Cow position: chr21:15584472-15584299 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 135
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 51, 0

Conread position: 356-525
Cow position: chr21:15976583-15976753 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 51, 9

Conread position: 356-525
Cow position: chr21:23322128-23321958 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 124
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 51, 36

Conread position: 356-525
Cow position: chr21:24642468-24642640 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 49, 151

Conread position: 356-525
Cow position: chr21:28733966-28733793 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 51, 136

Conread position: 356-525
Cow position: chr21:28924063-28924229 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 120
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 356-525
Cow position: chr21:32339789-32339620 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 50, 83

Conread position: 356-525
Cow position: chr21:34151531-34151705 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 9, 153

Conread position: 356-525
Cow position: chr21:36789743-36789915 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 50, 18

Conread position: 356-525
Cow position: chr21:37706468-37706295 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 50, 15

Conread position: 356-525
Cow position: chr21:42384458-42384628 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 51, 87

Conread position: 356-525
Cow position: chr21:45330653-45330487 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 46, 94

Conread position: 356-525
Cow position: chr21:47363791-47363614 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 6, 0

Conread position: 356-525
Cow position: chr21:47714055-47713888 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 51, 33

Conread position: 357-512
Cow position: chr21:5612058-5612215 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 80, 131

Conread position: 358-521
Cow position: chr21:43357308-43357140 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 60

Conread position: 358-525
Cow position: chr21:9416198-9416371 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 48, 0

Conread position: 358-525
Cow position: chr21:40266074-40266241 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 48, 126

Conread position: 361-524
Cow position: chr21:19513818-19513985 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 45, 99

Conread position: 361-525
Cow position: chr21:27863562-27863393 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 47, 0

Conread position: 364-525
Cow position: chr21:34391019-34390855 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 42, 0

Conread position: 364-525
Cow position: chr21:45473796-45473638 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 115
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 364-525
Cow position: chr21:45921102-45920938 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 43, 0

Conread position: 368-525
Cow position: chr21:471637-471796 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 39, 0

Conread position: 368-525
Cow position: chr21:41878431-41878591 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 371-525
Cow position: chr21:20160641-20160796 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 36, 78

Conread position: 372-525
Cow position: chr21:42209667-42209509 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 35, 0

Conread position: 378-524
Cow position: chr21:29978790-29978641 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 29, 0

Show alignments to all cow chromosomes.