Cow genome map
| Conread name: | rcki31_k1.y1 |
| Conread position: | 39-524 |
| Cow position: | chr28:7372542-7372062 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 23 |
| Conread position: | 340-525 |
| Cow position: | chr28:3011402-3011210 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 16, 182 |
| Conread position: | 340-525 |
| Cow position: | chr28:7698107-7697921 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 22, 163 |
| Conread position: | 340-525 |
| Cow position: | chr28:19564351-19564167 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 107, 13 |
| Conread position: | 343-525 |
| Cow position: | chr28:23410448-23410262 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 347-476 |
| Cow position: | chr28:10606748-10606613 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 349-523 |
| Cow position: | chr28:21598371-21598193 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 349-525 |
| Cow position: | chr28:18760165-18759985 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 57, 97 |
| Conread position: | 349-525 |
| Cow position: | chr28:23007851-23007669 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 349-525 |
| Cow position: | chr28:33051911-33052098 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 351-499 |
| Cow position: | chr28:18370123-18369972 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 56, 134 |
| Conread position: | 351-499 |
| Cow position: | chr28:28903783-28903628 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 351-525 |
| Cow position: | chr28:21502281-21502453 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 351-525 |
| Cow position: | chr28:31987497-31987675 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 54, 68 |
| Conread position: | 353-525 |
| Cow position: | chr28:32365733-32365905 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 54, 25 |
| Conread position: | 356-472 |
| Cow position: | chr28:118162-118042 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 356-474 |
| Cow position: | chr28:4880376-4880254 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 356-515 |
| Cow position: | chr28:16085214-16085376 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 356-516 |
| Cow position: | chr28:5166656-5166819 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 49, 77 |
| Conread position: | 356-521 |
| Cow position: | chr28:4881348-4881183 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 9, 82 |
| Conread position: | 356-521 |
| Cow position: | chr28:8408624-8408791 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 52, 95 |
| Conread position: | 356-521 |
| Cow position: | chr28:25728089-25728251 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 50, 131 |
| Conread position: | 356-521 |
| Cow position: | chr28:26685004-26685174 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 128 |
| Conread position: | 356-521 |
| Cow position: | chr28:26982848-26982681 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 6, 95 |
| Conread position: | 356-521 |
| Cow position: | chr28:27218214-27218380 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 49, 87 |
| Conread position: | 356-525 |
| Cow position: | chr28:2752604-2752433 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 15 |
| Conread position: | 356-525 |
| Cow position: | chr28:3449191-3449364 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 356-525 |
| Cow position: | chr28:4308015-4307836 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 356-525 |
| Cow position: | chr28:5826840-5827011 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 94 |
| Conread position: | 356-525 |
| Cow position: | chr28:9099826-9099994 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 50, 36 |
| Conread position: | 356-525 |
| Cow position: | chr28:11786822-11786656 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 81, 44 |
| Conread position: | 356-525 |
| Cow position: | chr28:20313165-20313338 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 356-525 |
| Cow position: | chr28:21380768-21380942 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 356-525 |
| Cow position: | chr28:25806462-25806634 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 356-525 |
| Cow position: | chr28:27161438-27161265 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 356-525 |
| Cow position: | chr28:30746838-30746669 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 66 |
| Conread position: | 357-484 |
| Cow position: | chr28:34878079-34877947 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 357-525 |
| Cow position: | chr28:7009086-7008917 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 86 |
| Conread position: | 358-472 |
| Cow position: | chr28:13607777-13607897 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 358-525 |
| Cow position: | chr28:5144625-5144460 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 361-522 |
| Cow position: | chr28:20409287-20409447 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 87, 145 |
| Conread position: | 364-525 |
| Cow position: | chr28:10745110-10745275 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 364-525 |
| Cow position: | chr28:11818065-11817906 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 364-525 |
| Cow position: | chr28:12946846-12947010 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 364-525 |
| Cow position: | chr28:21355121-21355292 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 42, 102 |
| Conread position: | 369-525 |
| Cow position: | chr28:25249256-25249415 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 376-525 |
| Cow position: | chr28:11559724-11559571 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 388-525 |
| Cow position: | chr28:3161032-3160892 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
Show alignments to all cow chromosomes.