Cow genome map
| Conread name: | rcki31_k1.y1 |
| Conread position: | 49-226 |
| Cow position: | chr6:28680527-28680349 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 338-525 |
| Cow position: | chr6:16700171-16700357 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 70, 105 |
| Conread position: | 341-525 |
| Cow position: | chr6:28283775-28283957 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 64, 77 |
| Conread position: | 342-525 |
| Cow position: | chr6:143459-143279 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 105, 74 |
| Conread position: | 343-521 |
| Cow position: | chr6:57405212-57405033 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 63, 94 |
| Conread position: | 345-521 |
| Cow position: | chr6:15447290-15447106 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 346-511 |
| Cow position: | chr6:54490821-54490651 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 346-525 |
| Cow position: | chr6:37395495-37395305 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-525 |
| Cow position: | chr6:54365089-54364896 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 348-519 |
| Cow position: | chr6:40713585-40713413 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 5, 96 |
| Conread position: | 348-521 |
| Cow position: | chr6:52248215-52248040 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 59, 82 |
| Conread position: | 348-525 |
| Cow position: | chr6:38207575-38207394 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 56, 73 |
| Conread position: | 348-525 |
| Cow position: | chr6:40032109-40032286 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 90, 57 |
| Conread position: | 349-496 |
| Cow position: | chr6:38233875-38234026 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 349-499 |
| Cow position: | chr6:35990316-35990166 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 98, 86 |
| Conread position: | 349-516 |
| Cow position: | chr6:28148169-28148343 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 146 |
| Conread position: | 349-521 |
| Cow position: | chr6:12543016-12542838 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 349-522 |
| Cow position: | chr6:8804613-8804438 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 57, 140 |
| Conread position: | 349-522 |
| Cow position: | chr6:44099003-44099179 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 16, 158 |
| Conread position: | 349-525 |
| Cow position: | chr6:11246680-11246860 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 58, 128 |
| Conread position: | 349-525 |
| Cow position: | chr6:14914323-14914140 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 13 |
| Conread position: | 349-525 |
| Cow position: | chr6:23402073-23401897 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 57, 91 |
| Conread position: | 349-525 |
| Cow position: | chr6:48169862-48170034 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 13, 54 |
| Conread position: | 349-525 |
| Cow position: | chr6:59069707-59069528 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 349-525 |
| Cow position: | chr6:62925080-62924900 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 58, 78 |
| Conread position: | 351-521 |
| Cow position: | chr6:2623701-2623865 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 55, 111 |
| Conread position: | 351-525 |
| Cow position: | chr6:5095628-5095446 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 352-525 |
| Cow position: | chr6:54867434-54867613 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 355-525 |
| Cow position: | chr6:17997391-17997224 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 356-470 |
| Cow position: | chr6:18968856-18968739 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 356-491 |
| Cow position: | chr6:16411115-16411253 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 356-496 |
| Cow position: | chr6:34075951-34076096 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 356-496 |
| Cow position: | chr6:38614740-38614886 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 356-499 |
| Cow position: | chr6:68049361-68049501 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 356-511 |
| Cow position: | chr6:58370678-58370840 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 356-520 |
| Cow position: | chr6:59108869-59109036 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 356-521 |
| Cow position: | chr6:37149112-37149281 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 356-521 |
| Cow position: | chr6:38441100-38441264 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 126 |
| Conread position: | 356-521 |
| Cow position: | chr6:54368975-54368812 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 6, 63 |
| Conread position: | 356-521 |
| Cow position: | chr6:60057729-60057563 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 31 |
| Conread position: | 356-523 |
| Cow position: | chr6:66874273-66874445 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 6, 125 |
| Conread position: | 356-524 |
| Cow position: | chr6:16103270-16103102 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 93, 150 |
| Conread position: | 356-525 |
| Cow position: | chr6:377054-377221 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 138, 91 |
| Conread position: | 356-525 |
| Cow position: | chr6:582348-582177 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 50, 150 |
| Conread position: | 356-525 |
| Cow position: | chr6:4692055-4691879 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 356-525 |
| Cow position: | chr6:4864624-4864451 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 50, 153 |
| Conread position: | 356-525 |
| Cow position: | chr6:10176372-10176206 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 87 |
| Conread position: | 356-525 |
| Cow position: | chr6:12845309-12845473 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 48, 88 |
| Conread position: | 356-525 |
| Cow position: | chr6:15300894-15300737 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 356-525 |
| Cow position: | chr6:15937927-15937759 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 50, 62 |
| Conread position: | 356-525 |
| Cow position: | chr6:19292723-19292897 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 356-525 |
| Cow position: | chr6:21234968-21235139 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 72, 47 |
| Conread position: | 356-525 |
| Cow position: | chr6:37462946-37463118 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 88, 46 |
| Conread position: | 356-525 |
| Cow position: | chr6:42565613-42565784 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 53, 96 |
| Conread position: | 356-525 |
| Cow position: | chr6:50984150-50984318 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 49, 70 |
| Conread position: | 356-525 |
| Cow position: | chr6:60667344-60667509 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 50, 82 |
| Conread position: | 356-525 |
| Cow position: | chr6:60739940-60740110 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 51, 84 |
| Conread position: | 357-515 |
| Cow position: | chr6:16288127-16287972 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 50, 80 |
| Conread position: | 358-470 |
| Cow position: | chr6:20230902-20230785 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 364-496 |
| Cow position: | chr6:6673036-6673169 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 43, 86 |
| Conread position: | 364-520 |
| Cow position: | chr6:66531889-66531731 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 45, 72 |
| Conread position: | 364-525 |
| Cow position: | chr6:28318336-28318493 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 42, 77 |
| Conread position: | 364-525 |
| Cow position: | chr6:35993518-35993680 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 368-496 |
| Cow position: | chr6:65264602-65264475 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 38, 75 |
| Conread position: | 370-525 |
| Cow position: | chr6:7190181-7190023 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 37, 94 |
| Conread position: | 370-525 |
| Cow position: | chr6:18049086-18048928 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
Show alignments to all cow chromosomes.