Cow genome map
| Conread name: | rcki31_k1.y1 |
| Conread position: | 39-517 |
| Cow position: | chr8:22183285-22183767 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 323 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 65, 24 |
| Conread position: | 338-525 |
| Cow position: | chr8:61128819-61128630 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 68, 102 |
| Conread position: | 340-483 |
| Cow position: | chr8:56248862-56249006 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 343-521 |
| Cow position: | chr8:41722299-41722127 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 343-525 |
| Cow position: | chr8:60576169-60575992 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 345-472 |
| Cow position: | chr8:32295846-32295714 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 346-525 |
| Cow position: | chr8:13723294-13723476 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 347-494 |
| Cow position: | chr8:35555668-35555516 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 348-493 |
| Cow position: | chr8:20112000-20112149 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 348-521 |
| Cow position: | chr8:1394115-1394294 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 11, 46 |
| Conread position: | 348-525 |
| Cow position: | chr8:20683856-20684039 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 348-525 |
| Cow position: | chr8:25388029-25388205 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 56, 89 |
| Conread position: | 349-484 |
| Cow position: | chr8:51480942-51480805 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 349-495 |
| Cow position: | chr8:6233010-6232859 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 349-507 |
| Cow position: | chr8:59438392-59438231 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 56, 12 |
| Conread position: | 349-521 |
| Cow position: | chr8:8097376-8097204 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 58, 89 |
| Conread position: | 349-521 |
| Cow position: | chr8:47284178-47284007 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 16, 44 |
| Conread position: | 349-521 |
| Cow position: | chr8:53429663-53429838 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 349-524 |
| Cow position: | chr8:53360343-53360173 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 349-525 |
| Cow position: | chr8:2164015-2163837 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 10, 74 |
| Conread position: | 349-525 |
| Cow position: | chr8:18207246-18207076 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 57, 73 |
| Conread position: | 349-525 |
| Cow position: | chr8:23179656-23179478 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 58, 155 |
| Conread position: | 349-525 |
| Cow position: | chr8:25455296-25455472 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 58, 46 |
| Conread position: | 349-525 |
| Cow position: | chr8:26625759-26625935 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 16, 95 |
| Conread position: | 349-525 |
| Cow position: | chr8:42762543-42762364 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 349-525 |
| Cow position: | chr8:43227860-43228040 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 349-525 |
| Cow position: | chr8:58520178-58520361 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 351-499 |
| Cow position: | chr8:41905727-41905578 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 54, 41 |
| Conread position: | 351-499 |
| Cow position: | chr8:41914635-41914486 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 54, 41 |
| Conread position: | 351-525 |
| Cow position: | chr8:16144018-16144197 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 351-525 |
| Cow position: | chr8:19011905-19011728 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 353-524 |
| Cow position: | chr8:11606225-11606392 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 40 |
| Conread position: | 354-524 |
| Cow position: | chr8:18081429-18081599 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 21, 70 |
| Conread position: | 356-472 |
| Cow position: | chr8:55719433-55719312 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 356-476 |
| Cow position: | chr8:1834817-1834939 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 356-484 |
| Cow position: | chr8:48422712-48422842 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 356-487 |
| Cow position: | chr8:37148016-37148151 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 50, 84 |
| Conread position: | 356-495 |
| Cow position: | chr8:28412720-28412576 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 356-496 |
| Cow position: | chr8:20837019-20837162 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 6, 78 |
| Conread position: | 356-499 |
| Cow position: | chr8:43191129-43190989 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 356-509 |
| Cow position: | chr8:24471545-24471703 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 356-519 |
| Cow position: | chr8:37347563-37347394 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 356-521 |
| Cow position: | chr8:5866971-5867140 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 356-521 |
| Cow position: | chr8:7149798-7149637 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 30 |
| Conread position: | 356-521 |
| Cow position: | chr8:10297840-10297674 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 53, 80 |
| Conread position: | 356-521 |
| Cow position: | chr8:37334067-37334235 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 51, 62 |
| Conread position: | 356-521 |
| Cow position: | chr8:37882241-37882408 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 51, 77 |
| Conread position: | 356-524 |
| Cow position: | chr8:44437661-44437834 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 81 |
| Conread position: | 356-525 |
| Cow position: | chr8:538020-537846 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 53, 41 |
| Conread position: | 356-525 |
| Cow position: | chr8:1023860-1024026 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 49, 131 |
| Conread position: | 356-525 |
| Cow position: | chr8:1187814-1187988 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 356-525 |
| Cow position: | chr8:4940413-4940252 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 14 |
| Conread position: | 356-525 |
| Cow position: | chr8:8323976-8323803 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 356-525 |
| Cow position: | chr8:9917775-9917950 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 356-525 |
| Cow position: | chr8:19204549-19204379 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 91, 49 |
| Conread position: | 356-525 |
| Cow position: | chr8:19995836-19995666 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 56, 105 |
| Conread position: | 356-525 |
| Cow position: | chr8:20157870-20157693 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 356-525 |
| Cow position: | chr8:20657474-20657295 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 356-525 |
| Cow position: | chr8:36375615-36375449 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 88, 44 |
| Conread position: | 356-525 |
| Cow position: | chr8:45127806-45127636 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 356-525 |
| Cow position: | chr8:45781767-45781602 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 356-525 |
| Cow position: | chr8:53383294-53383471 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 48, 69 |
| Conread position: | 356-525 |
| Cow position: | chr8:53558711-53558543 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 86, 128 |
| Conread position: | 356-525 |
| Cow position: | chr8:53633332-53633156 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 357-520 |
| Cow position: | chr8:33586110-33586275 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 80 |
| Conread position: | 357-524 |
| Cow position: | chr8:48775715-48775885 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 49, 79 |
| Conread position: | 357-525 |
| Cow position: | chr8:14947400-14947229 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 49, 93 |
| Conread position: | 357-525 |
| Cow position: | chr8:36768370-36768542 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 358-472 |
| Cow position: | chr8:54305979-54306093 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 358-476 |
| Cow position: | chr8:36465104-36465224 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 358-524 |
| Cow position: | chr8:11278210-11278039 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 358-525 |
| Cow position: | chr8:20926743-20926564 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 359-525 |
| Cow position: | chr8:17232465-17232294 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 45, 109 |
| Conread position: | 361-525 |
| Cow position: | chr8:34171776-34171942 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 364-521 |
| Cow position: | chr8:49687316-49687155 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 41, 155 |
| Conread position: | 364-525 |
| Cow position: | chr8:29026731-29026570 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 42, 79 |
| Conread position: | 364-525 |
| Cow position: | chr8:40143950-40143785 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 364-525 |
| Cow position: | chr8:40579509-40579347 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 43, 85 |
| Conread position: | 365-525 |
| Cow position: | chr8:21077491-21077650 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 42, 108 |
| Conread position: | 365-525 |
| Cow position: | chr8:53552582-53552742 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 42, 72 |
| Conread position: | 368-499 |
| Cow position: | chr8:53485605-53485740 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 368-525 |
| Cow position: | chr8:4500398-4500559 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 368-525 |
| Cow position: | chr8:26304482-26304324 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 74 |
| Conread position: | 368-525 |
| Cow position: | chr8:27138886-27138728 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 75, 44 |
Show alignments to all cow chromosomes.