Cow genome map
| Conread name: | rcki31_k1.y1 |
| Conread position: | 99-494 |
| Cow position: | chr9:51557096-51557487 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 267 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 138, 162 |
| Conread position: | 326-506 |
| Cow position: | chr9:31270953-31270771 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 81, 14 |
| Conread position: | 338-524 |
| Cow position: | chr9:32669785-32669973 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 340-518 |
| Cow position: | chr9:15225141-15225316 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 67, 15 |
| Conread position: | 341-521 |
| Cow position: | chr9:35167332-35167153 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 12, 72 |
| Conread position: | 341-525 |
| Cow position: | chr9:17411033-17411220 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 66, 28 |
| Conread position: | 343-480 |
| Cow position: | chr9:5069221-5069084 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 61, 99 |
| Conread position: | 343-525 |
| Cow position: | chr9:4630261-4630077 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 347-480 |
| Cow position: | chr9:26390921-26390785 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 347-521 |
| Cow position: | chr9:15805771-15805946 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 6, 25 |
| Conread position: | 347-525 |
| Cow position: | chr9:43937093-43936918 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 59, 90 |
| Conread position: | 348-525 |
| Cow position: | chr9:33598134-33597959 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 90 |
| Conread position: | 348-525 |
| Cow position: | chr9:54681658-54681482 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 44 |
| Conread position: | 349-472 |
| Cow position: | chr9:32812496-32812375 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 58, 94 |
| Conread position: | 349-472 |
| Cow position: | chr9:50667576-50667447 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 349-484 |
| Cow position: | chr9:20738853-20738710 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 349-494 |
| Cow position: | chr9:10092239-10092390 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 13, 78 |
| Conread position: | 349-520 |
| Cow position: | chr9:62668404-62668226 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 349-521 |
| Cow position: | chr9:1952117-1952293 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 349-521 |
| Cow position: | chr9:4646175-4646348 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 11, 94 |
| Conread position: | 349-521 |
| Cow position: | chr9:11123331-11123508 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 349-521 |
| Cow position: | chr9:17799781-17799603 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 349-521 |
| Cow position: | chr9:22151931-22152108 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 57, 143 |
| Conread position: | 349-521 |
| Cow position: | chr9:38961283-38961453 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 349-521 |
| Cow position: | chr9:54528664-54528491 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 13, 152 |
| Conread position: | 349-524 |
| Cow position: | chr9:11319482-11319660 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 349-525 |
| Cow position: | chr9:5433790-5433605 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 349-525 |
| Cow position: | chr9:7409929-7409736 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 349-525 |
| Cow position: | chr9:8998508-8998322 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 349-525 |
| Cow position: | chr9:18216952-18217126 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 100, 49 |
| Conread position: | 349-525 |
| Cow position: | chr9:26403937-26403758 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 349-525 |
| Cow position: | chr9:28354670-28354490 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 349-525 |
| Cow position: | chr9:33218800-33218981 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 93, 124 |
| Conread position: | 349-525 |
| Cow position: | chr9:35375580-35375399 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 13, 177 |
| Conread position: | 349-525 |
| Cow position: | chr9:38344042-38343863 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 58, 160 |
| Conread position: | 349-525 |
| Cow position: | chr9:55287746-55287916 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 99, 49 |
| Conread position: | 349-525 |
| Cow position: | chr9:64050409-64050588 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 350-525 |
| Cow position: | chr9:15215535-15215714 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 351-493 |
| Cow position: | chr9:29091944-29091797 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 351-521 |
| Cow position: | chr9:26086209-26086037 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 87, 15 |
| Conread position: | 352-511 |
| Cow position: | chr9:49764805-49764644 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 352-525 |
| Cow position: | chr9:9443449-9443628 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 41, 142 |
| Conread position: | 356-487 |
| Cow position: | chr9:34000479-34000609 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 356-513 |
| Cow position: | chr9:6225309-6225470 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 356-520 |
| Cow position: | chr9:24997375-24997541 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 356-521 |
| Cow position: | chr9:3220281-3220113 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 356-521 |
| Cow position: | chr9:5509867-5509701 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 356-521 |
| Cow position: | chr9:17310418-17310585 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 53, 152 |
| Conread position: | 356-521 |
| Cow position: | chr9:41679890-41679724 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 48, 80 |
| Conread position: | 356-521 |
| Cow position: | chr9:50543278-50543449 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 356-521 |
| Cow position: | chr9:64559740-64559905 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 87 |
| Conread position: | 356-524 |
| Cow position: | chr9:17518346-17518515 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 65 |
| Conread position: | 356-525 |
| Cow position: | chr9:1867594-1867424 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 51, 115 |
| Conread position: | 356-525 |
| Cow position: | chr9:6089236-6089061 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 41 |
| Conread position: | 356-525 |
| Cow position: | chr9:8534546-8534717 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 356-525 |
| Cow position: | chr9:9416260-9416422 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 356-525 |
| Cow position: | chr9:11168874-11168703 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 356-525 |
| Cow position: | chr9:19493318-19493493 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 356-525 |
| Cow position: | chr9:21888311-21888143 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 48, 93 |
| Conread position: | 356-525 |
| Cow position: | chr9:22443483-22443654 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 94 |
| Conread position: | 356-525 |
| Cow position: | chr9:26477360-26477189 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 51, 41 |
| Conread position: | 356-525 |
| Cow position: | chr9:27279453-27279282 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 50, 76 |
| Conread position: | 356-525 |
| Cow position: | chr9:28726576-28726751 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 356-525 |
| Cow position: | chr9:34284092-34283926 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 100, 56 |
| Conread position: | 356-525 |
| Cow position: | chr9:35850045-35849877 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 9, 51 |
| Conread position: | 356-525 |
| Cow position: | chr9:41283158-41282988 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 50, 87 |
| Conread position: | 356-525 |
| Cow position: | chr9:42445835-42446010 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 356-525 |
| Cow position: | chr9:49417132-49416960 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 6, 82 |
| Conread position: | 356-525 |
| Cow position: | chr9:50080902-50081067 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 50, 81 |
| Conread position: | 357-476 |
| Cow position: | chr9:18002808-18002932 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 357-524 |
| Cow position: | chr9:5594643-5594477 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 357-525 |
| Cow position: | chr9:11303938-11304102 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 90, 78 |
| Conread position: | 357-525 |
| Cow position: | chr9:47906137-47906309 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 82, 45 |
| Conread position: | 358-521 |
| Cow position: | chr9:3387833-3387666 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 358-524 |
| Cow position: | chr9:51720760-51720923 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 48, 87 |
| Conread position: | 359-525 |
| Cow position: | chr9:32676821-32676650 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 361-525 |
| Cow position: | chr9:9461516-9461684 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 43, 117 |
| Conread position: | 364-518 |
| Cow position: | chr9:1520601-1520757 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 43, 76 |
| Conread position: | 364-525 |
| Cow position: | chr9:35533816-35533980 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 364-525 |
| Cow position: | chr9:43871115-43870948 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 364-525 |
| Cow position: | chr9:52839750-52839908 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 75 |
| Conread position: | 364-525 |
| Cow position: | chr9:63745947-63745788 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 42, 61 |
| Conread position: | 368-525 |
| Cow position: | chr9:51566362-51566522 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 38, 51 |
| Conread position: | 370-521 |
| Cow position: | chr9:55084167-55084325 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 34, 124 |
Show alignments to all cow chromosomes.