Cow genome map

Conread name: rcki31_k1.y1

Conread position: 30-474
Cow position: chrX:25283422-25282983 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 17

Conread position: 341-496
Cow position: chrX:20882041-20881885 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 113
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 106, 0

Conread position: 341-525
Cow position: chrX:5900365-5900545 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 65, 108

Conread position: 341-525
Cow position: chrX:42855352-42855541 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 140
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 97, 15

Conread position: 345-496
Cow position: chrX:36356015-36356166 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 61, 47

Conread position: 345-525
Cow position: chrX:11633580-11633765 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 62, 0

Conread position: 346-525
Cow position: chrX:20168458-20168641 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 348-470
Cow position: chrX:42461841-42461716 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 58, 0

Conread position: 348-499
Cow position: chrX:29549645-29549488 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 348-524
Cow position: chrX:17231634-17231817 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 12, 40

Conread position: 348-524
Cow position: chrX:23562538-23562714 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 89, 100

Conread position: 348-525
Cow position: chrX:20339986-20339809 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 92, 119

Conread position: 348-525
Cow position: chrX:38728640-38728817 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 11, 114

Conread position: 349-467
Cow position: chrX:23497764-23497642 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 349-470
Cow position: chrX:41199011-41199134 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 99, 0

Conread position: 349-490
Cow position: chrX:40647890-40648034 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 57, 0

Conread position: 349-521
Cow position: chrX:27685151-27685327 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 349-521
Cow position: chrX:29120950-29121126 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 125
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 58, 0

Conread position: 349-524
Cow position: chrX:15007246-15007067 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 349-525
Cow position: chrX:5638261-5638086 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 58, 28

Conread position: 349-525
Cow position: chrX:8925605-8925782 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 57, 94

Conread position: 349-525
Cow position: chrX:10516160-10516336 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 57, 36

Conread position: 349-525
Cow position: chrX:10831589-10831404 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 349-525
Cow position: chrX:11614603-11614776 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 10, 100

Conread position: 349-525
Cow position: chrX:12405478-12405298 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 128
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 56, 16

Conread position: 349-525
Cow position: chrX:17662689-17662515 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 58, 94

Conread position: 349-525
Cow position: chrX:27680303-27680481 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 60, 29

Conread position: 349-525
Cow position: chrX:29601926-29601745 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 57, 0

Conread position: 349-525
Cow position: chrX:29680356-29680178 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 58, 0

Conread position: 349-525
Cow position: chrX:34401902-34402083 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 57, 114

Conread position: 349-525
Cow position: chrX:34502826-34503003 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 60, 94

Conread position: 349-525
Cow position: chrX:37129172-37129352 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 9, 37

Conread position: 349-525
Cow position: chrX:37910350-37910528 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 127
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 93, 52

Conread position: 349-525
Cow position: chrX:39558446-39558265 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 349-525
Cow position: chrX:41027061-41027242 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 57, 7

Conread position: 349-525
Cow position: chrX:44054711-44054885 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 57, 80

Conread position: 349-525
Cow position: chrX:44961652-44961834 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 350-524
Cow position: chrX:46532596-46532413 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 350-525
Cow position: chrX:40480964-40480789 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 15, 156

Conread position: 353-525
Cow position: chrX:9365767-9365593 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 53, 69

Conread position: 353-525
Cow position: chrX:15814995-15815167 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 52, 39

Conread position: 353-525
Cow position: chrX:21327814-21327996 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 354-525
Cow position: chrX:34315431-34315604 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 85, 40

Conread position: 355-525
Cow position: chrX:31489430-31489603 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 123
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 82, 0

Conread position: 356-472
Cow position: chrX:41743823-41743944 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 53, 0

Conread position: 356-472
Cow position: chrX:42874895-42875013 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 51, 84

Conread position: 356-483
Cow position: chrX:35681252-35681383 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 356-495
Cow position: chrX:8797164-8797309 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 356-496
Cow position: chrX:28845742-28845887 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 356-496
Cow position: chrX:36961554-36961695 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 50, 84

Conread position: 356-499
Cow position: chrX:41167053-41166905 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 356-515
Cow position: chrX:6234541-6234376 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 356-521
Cow position: chrX:32820941-32821107 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 51, 135

Conread position: 356-521
Cow position: chrX:37489639-37489798 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 356-523
Cow position: chrX:11589676-11589507 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 50, 93

Conread position: 356-524
Cow position: chrX:5679654-5679490 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 92, 61

Conread position: 356-525
Cow position: chrX:161324-161495 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 63

Conread position: 356-525
Cow position: chrX:5872232-5872400 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 82, 0

Conread position: 356-525
Cow position: chrX:6278589-6278415 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 50, 0

Conread position: 356-525
Cow position: chrX:7710627-7710456 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 43, 87

Conread position: 356-525
Cow position: chrX:22387331-22387167 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 50, 85

Conread position: 356-525
Cow position: chrX:23514104-23513934 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 50, 71

Conread position: 356-525
Cow position: chrX:24365914-24365738 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 125
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 356-525
Cow position: chrX:27228039-27228209 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 51, 92

Conread position: 356-525
Cow position: chrX:27394109-27393943 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 79, 0

Conread position: 356-525
Cow position: chrX:27705498-27705669 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 50, 66

Conread position: 356-525
Cow position: chrX:28878258-28878091 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 124
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 50, 85

Conread position: 356-525
Cow position: chrX:38964015-38964191 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 139
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 31, 0

Conread position: 356-525
Cow position: chrX:42247275-42247099 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 356-525
Cow position: chrX:43730307-43730141 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 51, 0

Conread position: 356-525
Cow position: chrX:44396929-44397093 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 51, 87

Conread position: 356-525
Cow position: chrX:46587731-46587905 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 356-525
Cow position: chrX:48044602-48044432 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 122
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 51, 151

Conread position: 357-521
Cow position: chrX:13868615-13868781 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 48, 116

Conread position: 357-524
Cow position: chrX:27946144-27945972 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 122
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 357-524
Cow position: chrX:40680523-40680696 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 51, 0

Conread position: 361-521
Cow position: chrX:42171380-42171215 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 45, 0

Conread position: 361-525
Cow position: chrX:10412069-10411903 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 46, 24

Conread position: 361-525
Cow position: chrX:42235612-42235441 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 364-524
Cow position: chrX:1499586-1499747 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 83, 0

Conread position: 364-524
Cow position: chrX:11856348-11856512 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 44, 35

Conread position: 364-524
Cow position: chrX:41238432-41238273 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 139, 0

Conread position: 364-525
Cow position: chrX:41068640-41068808 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 43, 0

Conread position: 364-525
Cow position: chrX:46433410-46433574 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 116
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 365-524
Cow position: chrX:18695004-18694849 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 42, 58

Conread position: 365-525
Cow position: chrX:39220000-39220162 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 42, 35

Conread position: 368-525
Cow position: chrX:3579869-3580027 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 112
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 368-525
Cow position: chrX:4515607-4515774 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 368-525
Cow position: chrX:25815983-25815818 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 69, 0

Conread position: 368-525
Cow position: chrX:38549370-38549530 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 38, 72

Conread position: 371-524
Cow position: chrX:11717862-11717701 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 36, 0

Show alignments to all cow chromosomes.