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Cow genome map

           
Conread name:
           
rcki31_m16.y1
        

               
Conread position:
               
1-272
               

               
Cow position:
               
chr1:71666847-71667141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 178
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr1:68252956-68252659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
74, 178
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr1:15463477-15463151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 50
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr1:4515104-4515431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 163
               

               
Conread position:
               
1-346
               

               
Cow position:
               
chr1:19884278-19884636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 22
               

               
Conread position:
               
1-346
               

               
Cow position:
               
chr1:21507465-21507820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 281
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr1:68282164-68281814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 49
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chr1:42740323-42739950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 284
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr1:67290240-67289875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
77, 17
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr1:3263613-3263235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 48
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr1:52434649-52434257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 176
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chr1:16116772-16117174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 284
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr1:86496916-86496507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 284
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr1:79334360-79334780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 284
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr1:57396715-57397109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 48
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr1:63240318-63239897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 178
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr1:70864870-70864456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 177
               

               
Conread position:
               
1-428
               

               
Cow position:
               
chr1:34858069-34858487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 181
               

               
Conread position:
               
1-428
               

               
Cow position:
               
chr1:86505726-86506153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 181
               

               
Conread position:
               
1-445
               

               
Cow position:
               
chr1:51980598-51980153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 210
               

               
Conread position:
               
1-447
               

               
Cow position:
               
chr1:76748770-76749228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 279
               

               
Conread position:
               
1-475
               

               
Cow position:
               
chr1:32913128-32912646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
74, 43
               

               
Conread position:
               
1-499
               

               
Cow position:
               
chr1:6165602-6165099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 192
               

               
Conread position:
               
1-499
               

               
Cow position:
               
chr1:72766411-72766925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 213
               

               
Conread position:
               
1-500
               

               
Cow position:
               
chr1:67913705-67913185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 19
               

               
Conread position:
               
1-506
               

               
Cow position:
               
chr1:88677095-88676560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 22
               

               
Conread position:
               
1-516
               

               
Cow position:
               
chr1:100421211-100420695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 35
               

               
Conread position:
               
1-521
               

               
Cow position:
               
chr1:73063715-73064245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 25
               

               
Conread position:
               
1-523
               

               
Cow position:
               
chr1:21577178-21576637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 34
               

               
Conread position:
               
1-523
               

               
Cow position:
               
chr1:62928096-62927557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 284
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr1:6196653-6197190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 228
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr1:8602349-8602884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 284
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr1:16838944-16838403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 284
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr1:22481039-22481574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 55
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr1:24595211-24594695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 172
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr1:25088052-25088586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 59
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr1:28876724-28876184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 284
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr1:29038167-29037628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 279
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr1:30372517-30371991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 25
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr1:52355047-52355586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 22
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr1:53371995-53371444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 179
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr1:55043637-55044176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 218
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr1:56425539-56424997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 286
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr1:56746511-56745961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 284
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr1:57571459-57570917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 284
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr1:57759536-57759001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 166
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr1:66971545-66972071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 45
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr1:69770445-69769905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 257
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr1:71792556-71792010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 186
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr1:76617848-76618387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 277
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr1:79632929-79633466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 208
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr1:83136562-83136046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 277
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr1:86705764-86705238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 155
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr1:89089910-89090450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 284
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr1:91105665-91105128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 214
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr1:93858149-93857609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 284
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr1:95474283-95474814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 92
               

               
Conread position:
               
1-529
               

               
Cow position:
               
chr1:22012336-22012880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 199
               

               
Conread position:
               
1-529
               

               
Cow position:
               
chr1:23578188-23578722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 32
               

               
Conread position:
               
1-529
               

               
Cow position:
               
chr1:30531407-30531938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 85
               

               
Conread position:
               
1-536
               

               
Cow position:
               
chr1:72087213-72086672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 57
               

               
Conread position:
               
2-525
               

               
Cow position:
               
chr1:38712338-38711798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 283
               

               
Conread position:
               
2-525
               

               
Cow position:
               
chr1:55780494-55779958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 215
               

               
Conread position:
               
2-525
               

               
Cow position:
               
chr1:63602162-63602703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 283
               

               
Conread position:
               
2-525
               

               
Cow position:
               
chr1:72987081-72986544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 151
               

               
Conread position:
               
3-317
               

               
Cow position:
               
chr1:95765761-95766085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
72, 23
               

               
Conread position:
               
3-335
               

               
Cow position:
               
chr1:78291182-78290835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 282
               

               
Conread position:
               
3-525
               

               
Cow position:
               
chr1:26811450-26811986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 281
               

               
Conread position:
               
3-525
               

               
Cow position:
               
chr1:61746556-61747080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 262
               

               
Conread position:
               
5-286
               

               
Cow position:
               
chr1:12057631-12057924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 20
               

               
Conread position:
               
5-308
               

               
Cow position:
               
chr1:6765479-6765793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 183
               

               
Conread position:
               
5-441
               

               
Cow position:
               
chr1:38545093-38545547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 48
               

               
Conread position:
               
5-513
               

               
Cow position:
               
chr1:18196218-18195710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 280
               

               
Conread position:
               
5-523
               

               
Cow position:
               
chr1:20798444-20797914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 51
               

               
Conread position:
               
5-524
               

               
Cow position:
               
chr1:73761923-73762445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 175
               

               
Conread position:
               
6-149
               

               
Cow position:
               
chr1:100435929-100435778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
6-255
               

               
Cow position:
               
chr1:32360782-32361040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
72, 165
               

               
Conread position:
               
6-296
               

               
Cow position:
               
chr1:24202524-24202831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 43
               

               
Conread position:
               
6-346
               

               
Cow position:
               
chr1:32562917-32563269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 275
               

               
Conread position:
               
6-350
               

               
Cow position:
               
chr1:31352011-31352364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 175
               

               
Conread position:
               
6-356
               

               
Cow position:
               
chr1:26838569-26838211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 129
               

               
Conread position:
               
6-372
               

               
Cow position:
               
chr1:74939345-74938977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 118
               

               
Conread position:
               
6-374
               

               
Cow position:
               
chr1:4375181-4375546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 171
               

               
Conread position:
               
6-381
               

               
Cow position:
               
chr1:21453287-21453654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
66, 83
               

               
Conread position:
               
6-384
               

               
Cow position:
               
chr1:10034149-10033769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 230
               

               
Conread position:
               
6-396
               

               
Cow position:
               
chr1:79453141-79453541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 43
               

               
Conread position:
               
6-407
               

               
Cow position:
               
chr1:64941927-64942328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 157
               

               
Conread position:
               
6-413
               

               
Cow position:
               
chr1:52371594-52371174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 279
               

               
Conread position:
               
6-421
               

               
Cow position:
               
chr1:46694289-46694712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 241
               

               
Conread position:
               
6-425
               

               
Cow position:
               
chr1:36645830-36646261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 212
               

               
Conread position:
               
6-431
               

               
Cow position:
               
chr1:55158760-55159201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 280
               

               
Conread position:
               
6-478
               

               
Cow position:
               
chr1:71691175-71690704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 113
               

               
Conread position:
               
6-480
               

               
Cow position:
               
chr1:100887885-100888376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 280
               

               
Conread position:
               
6-510
               

               
Cow position:
               
chr1:24562131-24562647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 130
               

               
Conread position:
               
6-514
               

               
Cow position:
               
chr1:88530370-88530872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 42
               

               
Conread position:
               
6-516
               

               
Cow position:
               
chr1:53520272-53519760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 46
               

               
Conread position:
               
6-522
               

               
Cow position:
               
chr1:73443251-73443762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 101
               

               
Conread position:
               
6-523
               

               
Cow position:
               
chr1:94663275-94662741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 279
               

               
Conread position:
               
6-524
               

               
Cow position:
               
chr1:30495176-30494655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 171
               

               
Conread position:
               
6-524
               

               
Cow position:
               
chr1:58419292-58418763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 180
               

               
Conread position:
               
6-525
               

               
Cow position:
               
chr1:8828642-8828107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 278
               

               
Conread position:
               
6-525
               

               
Cow position:
               
chr1:14240445-14240973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 279
               

               
Conread position:
               
6-525
               

               
Cow position:
               
chr1:17938131-17938666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 280
               

               
Conread position:
               
6-525
               

               
Cow position:
               
chr1:19440922-19441440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 276
               

               
Conread position:
               
6-525
               

               
Cow position:
               
chr1:21376941-21377472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 43
               

               
Conread position:
               
6-525
               

               
Cow position:
               
chr1:29429226-29428683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 284
               

               
Conread position:
               
6-525
               

               
Cow position:
               
chr1:47454359-47454891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 278
               

               
Conread position:
               
6-525
               

               
Cow position:
               
chr1:52754913-52755446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 16
               

               
Conread position:
               
6-525
               

               
Cow position:
               
chr1:53309041-53309570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 176
               

               
Conread position:
               
6-525
               

               
Cow position:
               
chr1:57362711-57363246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 279
               

               
Conread position:
               
6-525
               

               
Cow position:
               
chr1:61204006-61203471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 279
               

               
Conread position:
               
6-525
               

               
Cow position:
               
chr1:65390179-65389645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 279
               

               
Conread position:
               
6-525
               

               
Cow position:
               
chr1:69406780-69406244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 279
               

               
Conread position:
               
6-525
               

               
Cow position:
               
chr1:89185846-89186365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 260
               

               
Conread position:
               
6-525
               

               
Cow position:
               
chr1:99917061-99916526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 279
               

               
Conread position:
               
6-525
               

               
Cow position:
               
chr1:102431121-102431653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 275
               

               
Conread position:
               
6-529
               

               
Cow position:
               
chr1:42875038-42875561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 177
               

               
Conread position:
               
6-538
               

               
Cow position:
               
chr1:102321498-102322027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 9
               

               
Conread position:
               
6-540
               

               
Cow position:
               
chr1:38418434-38417892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 172
               

               
Conread position:
               
6-541
               

               
Cow position:
               
chr1:18024198-18024745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 184
               

               
Conread position:
               
7-321
               

               
Cow position:
               
chr1:99837726-99838060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 282
               

               
Conread position:
               
7-334
               

               
Cow position:
               
chr1:28176369-28176034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 175
               

               
Conread position:
               
7-364
               

               
Cow position:
               
chr1:82880048-82879682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 231
               

               
Conread position:
               
7-495
               

               
Cow position:
               
chr1:61342091-61342586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 18
               

               
Conread position:
               
7-515
               

               
Cow position:
               
chr1:21132238-21132768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 177
               

               
Conread position:
               
7-525
               

               
Cow position:
               
chr1:21113803-21114335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 173
               

               
Conread position:
               
7-525
               

               
Cow position:
               
chr1:25553424-25552893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 277
               

               
Conread position:
               
7-525
               

               
Cow position:
               
chr1:30079561-30079029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 44
               

               
Conread position:
               
7-525
               

               
Cow position:
               
chr1:58340535-58340008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 278
               

               
Conread position:
               
7-525
               

               
Cow position:
               
chr1:85776841-85777373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 212
               

               
Conread position:
               
7-525
               

               
Cow position:
               
chr1:91889786-91890305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 153
               

               
Conread position:
               
7-525
               

               
Cow position:
               
chr1:93111743-93112280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 85
               

               
Conread position:
               
7-525
               

               
Cow position:
               
chr1:101834004-101833483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 58
               

               
Conread position:
               
7-537
               

               
Cow position:
               
chr1:24655449-24654907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 276
               

               
Conread position:
               
8-468
               

               
Cow position:
               
chr1:55327625-55328083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 269
               

               
Conread position:
               
9-191
               

               
Cow position:
               
chr1:72035834-72036022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
69, 50
               

               
Conread position:
               
12-516
               

               
Cow position:
               
chr1:89484707-89484210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 168
               

               
Conread position:
               
12-539
               

               
Cow position:
               
chr1:16973502-16974053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 90
               

               
Conread position:
               
13-224
               

               
Cow position:
               
chr1:15049417-15049196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
57, 77
               

               
Conread position:
               
15-227
               

               
Cow position:
               
chr1:92433378-92433174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
105, 50
               

               
Conread position:
               
15-470
               

               
Cow position:
               
chr1:82091508-82091037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 271
               

               
Conread position:
               
16-319
               

               
Cow position:
               
chr1:4645935-4646241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 10
               

               
Conread position:
               
17-473
               

               
Cow position:
               
chr1:33987217-33987689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 82
               

               
Conread position:
               
29-525
               

               
Cow position:
               
chr1:63049176-63048665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 22
               

               
Conread position:
               
38-525
               

               
Cow position:
               
chr1:31414632-31415137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 148
               

               
Conread position:
               
42-320
               

               
Cow position:
               
chr1:56475581-56475292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
33, 162
               

               
Conread position:
               
42-525
               

               
Cow position:
               
chr1:3382733-3383231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 243
               

               
Conread position:
               
42-525
               

               
Cow position:
               
chr1:70051806-70051327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 55
               

               
Conread position:
               
42-525
               

               
Cow position:
               
chr1:99571989-99572478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 131
               

               
Conread position:
               
58-428
               

               
Cow position:
               
chr1:50764707-50764347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 36
               

               
Conread position:
               
59-525
               

               
Cow position:
               
chr1:57957999-57958471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 14
               

               
Conread position:
               
65-458
               

               
Cow position:
               
chr1:31341849-31342243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 112
               

               
Conread position:
               
71-399
               

               
Cow position:
               
chr1:72103646-72103332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 9
               

               
Conread position:
               
72-499
               

               
Cow position:
               
chr1:43448958-43449389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 46
               

               
Conread position:
               
76-413
               

               
Cow position:
               
chr1:52379842-52379495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 206
               

               
Conread position:
               
80-458
               

               
Cow position:
               
chr1:30033811-30033436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 107
               

               
Conread position:
               
80-476
               

               
Cow position:
               
chr1:70534924-70535330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 181
               

               
Conread position:
               
82-525
               

               
Cow position:
               
chr1:88983944-88984362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 45
               

               
Conread position:
               
87-438
               

               
Cow position:
               
chr1:99581923-99582276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 246
               

               
Conread position:
               
87-510
               

               
Cow position:
               
chr1:24571618-24572034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 33
               

               
Conread position:
               
87-525
               

               
Cow position:
               
chr1:11018980-11018521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 83
               

               
Conread position:
               
88-515
               

               
Cow position:
               
chr1:40509726-40510160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 85
               

               
Conread position:
               
92-516
               

               
Cow position:
               
chr1:82518601-82519027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 108
               

               
Conread position:
               
95-385
               

               
Cow position:
               
chr1:61727561-61727849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 100
               

               
Conread position:
               
100-525
               

               
Cow position:
               
chr1:38279217-38279654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 72
               

               
Conread position:
               
101-410
               

               
Cow position:
               
chr1:29656708-29656391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 72
               

               
Conread position:
               
102-522
               

               
Cow position:
               
chr1:101523885-101524298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 54
               

               
Conread position:
               
120-321
               

               
Cow position:
               
chr1:20146908-20146706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
32, 83
               

               
Conread position:
               
120-356
               

               
Cow position:
               
chr1:52510622-52510858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 49
               

               
Conread position:
               
120-525
               

               
Cow position:
               
chr1:22529315-22529716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 235
               

               
Conread position:
               
120-538
               

               
Cow position:
               
chr1:11324985-11324576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
31, 49
               

               
Conread position:
               
120-538
               

               
Cow position:
               
chr1:21090961-21090524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 153
               

               
Conread position:
               
120-549
               

               
Cow position:
               
chr1:55145541-55145109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 160
               

               
Conread position:
               
122-351
               

               
Cow position:
               
chr1:61662044-61662276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
31, 53
               

               
Conread position:
               
122-525
               

               
Cow position:
               
chr1:67974728-67975118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 42
               

               
Conread position:
               
123-424
               

               
Cow position:
               
chr1:25178541-25178833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
123-525
               

               
Cow position:
               
chr1:48250210-48249801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 151
               

               
Conread position:
               
129-413
               

               
Cow position:
               
chr1:101853618-101853898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
26, 109
               

               
Conread position:
               
151-403
               

               
Cow position:
               
chr1:64594851-64595098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
152-525
               

               
Cow position:
               
chr1:77867015-77866665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
163-342
               

               
Cow position:
               
chr1:16372721-16372543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
163-525
               

               
Cow position:
               
chr1:30440602-30440254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 98
               

               
Conread position:
               
163-525
               

               
Cow position:
               
chr1:52171349-52171722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 106
               

               
Conread position:
               
165-525
               

               
Cow position:
               
chr1:21459118-21458778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
168-497
               

               
Cow position:
               
chr1:31707925-31707596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 100
               

               
Conread position:
               
170-525
               

               
Cow position:
               
chr1:56140916-56141267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 98
               

               
Conread position:
               
182-426
               

               
Cow position:
               
chr1:81860082-81860321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
182-481
               

               
Cow position:
               
chr1:22629417-22629708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 31
               

               
Conread position:
               
195-525
               

               
Cow position:
               
chr1:100709487-100709157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 73
               

               
Conread position:
               
199-523
               

               
Cow position:
               
chr1:53368620-53368297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 69
               

               
Conread position:
               
206-511
               

               
Cow position:
               
chr1:98535001-98534696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 63
               

               
Conread position:
               
210-525
               

               
Cow position:
               
chr1:27494356-27494050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 59
               

               
Conread position:
               
210-525
               

               
Cow position:
               
chr1:31362716-31363027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 46
               

               
Conread position:
               
226-525
               

               
Cow position:
               
chr1:57526666-57526362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 70
               

               
Conread position:
               
229-524
               

               
Cow position:
               
chr1:40920520-40920228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 39
               

               
Conread position:
               
239-421
               

               
Cow position:
               
chr1:59590767-59590947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
26, 85
               

               
Conread position:
               
243-525
               

               
Cow position:
               
chr1:38478673-38478391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 25
               

               
Conread position:
               
253-534
               

               
Cow position:
               
chr1:31238877-31239153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 15
               

               
Conread position:
               
277-479
               

               
Cow position:
               
chr1:23658802-23658996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
132, 96
               

               
Conread position:
               
282-525
               

               
Cow position:
               
chr1:12058190-12058434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 91
               

               
Conread position:
               
295-525
               

               
Cow position:
               
chr1:76852732-76852501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
130, 78
               

               
Conread position:
               
305-525
               

               
Cow position:
               
chr1:26141900-26142122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 68
               
Show alignments to all cow chromosomes.