Cow genome map

Conread name: rcki31_m16.y1

Conread position: 1-176
Cow position:
Alignm length: 185
Alignm identity: 138
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 92, 48

Conread position: 1-300
Cow position:
Alignm length: 317
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 246

Conread position: 1-319
Cow position:
Alignm length: 338
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 181

Conread position: 1-327
Cow position:
Alignm length: 348
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 289

Conread position: 1-343
Cow position:
Alignm length: 359
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 41

Conread position: 1-346
Cow position:
Alignm length: 361
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 69

Conread position: 1-362
Cow position:
Alignm length: 379
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-405
Cow position:
Alignm length: 430
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 187

Conread position: 1-425
Cow position:
Alignm length: 441
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 220

Conread position: 1-440
Cow position:
Alignm length: 450
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 94

Conread position: 1-450
Cow position:
Alignm length: 482
Alignm identity: 332
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 74, 260

Conread position: 1-463
Cow position:
Alignm length: 493
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 293

Conread position: 1-481
Cow position:
Alignm length: 503
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 58

Conread position: 1-491
Cow position:
Alignm length: 531
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 191

Conread position: 1-523
Cow position:
Alignm length: 532
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 14

Conread position: 1-523
Cow position:
Alignm length: 544
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 55

Conread position: 1-525
Cow position:
Alignm length: 547
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 48

Conread position: 1-525
Cow position:
Alignm length: 550
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 188

Conread position: 1-525
Cow position:
Alignm length: 554
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 292

Conread position: 1-525
Cow position:
Alignm length: 542
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 176

Conread position: 1-525
Cow position:
Alignm length: 549
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 82

Conread position: 1-525
Cow position:
Alignm length: 538
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 210

Conread position: 1-525
Cow position:
Alignm length: 534
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 207

Conread position: 1-525
Cow position:
Alignm length: 541
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 70

Conread position: 1-525
Cow position:
Alignm length: 548
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 180

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-525
Cow position:
Alignm length: 542
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 162

Conread position: 1-539
Cow position:
Alignm length: 566
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 182

Conread position: 1-549
Cow position:
Alignm length: 574
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 182

Conread position: 2-290
Cow position:
Alignm length: 309
Alignm identity: 227
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 68, 247

Conread position: 2-507
Cow position:
Alignm length: 520
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 74

Conread position: 2-525
Cow position:
Alignm length: 549
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 283

Conread position: 3-525
Cow position:
Alignm length: 549
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 46

Conread position: 5-495
Cow position:
Alignm length: 512
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 150

Conread position: 5-525
Cow position:
Alignm length: 527
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 148

Conread position: 5-525
Cow position:
Alignm length: 538
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 155

Conread position: 6-223
Cow position:
Alignm length: 231
Alignm identity: 171
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 70, 20

Conread position: 6-235
Cow position:
Alignm length: 247
Alignm identity: 188
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 72, 198

Conread position: 6-298
Cow position:
Alignm length: 299
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 85

Conread position: 6-348
Cow position:
Alignm length: 353
Alignm identity: 251
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 118, 39

Conread position: 6-358
Cow position:
Alignm length: 369
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 278

Conread position: 6-371
Cow position:
Alignm length: 383
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 209

Conread position: 6-443
Cow position:
Alignm length: 459
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-446
Cow position:
Alignm length: 459
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 19

Conread position: 6-457
Cow position:
Alignm length: 482
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 182

Conread position: 6-467
Cow position:
Alignm length: 483
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 213

Conread position: 6-499
Cow position:
Alignm length: 525
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 42

Conread position: 6-520
Cow position:
Alignm length: 541
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 190

Conread position: 6-522
Cow position:
Alignm length: 540
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 35

Conread position: 6-523
Cow position:
Alignm length: 537
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 67

Conread position: 6-524
Cow position:
Alignm length: 540
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 315

Conread position: 6-525
Cow position:
Alignm length: 532
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 38

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 540
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 279

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 280

Conread position: 6-525
Cow position:
Alignm length: 542
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 9

Conread position: 6-525
Cow position:
Alignm length: 537
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 279

Conread position: 6-525
Cow position:
Alignm length: 547
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 20

Conread position: 6-525
Cow position:
Alignm length: 542
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 281

Conread position: 6-525
Cow position:
Alignm length: 538
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 139

Conread position: 6-525
Cow position:
Alignm length: 539
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 276

Conread position: 6-525
Cow position:
Alignm length: 549
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 280

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 538
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 539
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 277

Conread position: 6-525
Cow position:
Alignm length: 538
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 70

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 148

Conread position: 6-525
Cow position:
Alignm length: 545
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 79

Conread position: 6-525
Cow position:
Alignm length: 537
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 279

Conread position: 6-529
Cow position:
Alignm length: 545
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 177

Conread position: 6-536
Cow position:
Alignm length: 557
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 9

Conread position: 6-538
Cow position:
Alignm length: 571
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 294

Conread position: 7-196
Cow position:
Alignm length: 201
Alignm identity: 147
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 64, 76

Conread position: 7-288
Cow position:
Alignm length: 298
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 271

Conread position: 7-315
Cow position:
Alignm length: 319
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 68

Conread position: 7-340
Cow position:
Alignm length: 347
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 187

Conread position: 7-389
Cow position:
Alignm length: 402
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 24

Conread position: 7-422
Cow position:
Alignm length: 427
Alignm identity: 281
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 66, 165

Conread position: 7-423
Cow position:
Alignm length: 440
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 179

Conread position: 7-481
Cow position:
Alignm length: 499
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 272

Conread position: 7-511
Cow position:
Alignm length: 526
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 279

Conread position: 7-525
Cow position:
Alignm length: 532
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 147

Conread position: 7-525
Cow position:
Alignm length: 536
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 278

Conread position: 7-525
Cow position:
Alignm length: 545
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 281

Conread position: 7-525
Cow position:
Alignm length: 538
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 12

Conread position: 8-413
Cow position:
Alignm length: 415
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 112

Conread position: 8-525
Cow position:
Alignm length: 532
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 69

Conread position: 9-406
Cow position:
Alignm length: 420
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 244

Conread position: 9-515
Cow position:
Alignm length: 517
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 56

Conread position: 10-466
Cow position:
Alignm length: 472
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 39

Conread position: 13-450
Cow position:
Alignm length: 459
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 272

Conread position: 13-525
Cow position:
Alignm length: 529
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 149

Conread position: 15-509
Cow position:
Alignm length: 519
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 18

Conread position: 16-457
Cow position:
Alignm length: 463
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 269

Conread position: 69-525
Cow position:
Alignm length: 470
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 196

Conread position: 80-523
Cow position:
Alignm length: 450
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 33

Conread position: 82-525
Cow position:
Alignm length: 456
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 27

Conread position: 87-525
Cow position:
Alignm length: 452
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 24

Conread position: 87-529
Cow position:
Alignm length: 462
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 27

Conread position: 95-525
Cow position:
Alignm length: 445
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 78

Conread position: 95-525
Cow position:
Alignm length: 444
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 161

Conread position: 96-425
Cow position:
Alignm length: 340
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 183

Conread position: 96-482
Cow position:
Alignm length: 400
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 101

Conread position: 98-524
Cow position:
Alignm length: 450
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 36

Conread position: 120-365
Cow position:
Alignm length: 251
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 153

Conread position: 120-525
Cow position:
Alignm length: 414
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 152

Conread position: 121-525
Cow position:
Alignm length: 415
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 144

Conread position: 152-306
Cow position:
Alignm length: 155
Alignm identity: 125
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 11, 0

Conread position: 152-321
Cow position:
Alignm length: 170
Alignm identity: 129
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 11, 0

Conread position: 152-469
Cow position:
Alignm length: 326
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 86

Conread position: 173-449
Cow position:
Alignm length: 281
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 12

Conread position: 183-525
Cow position:
Alignm length: 347
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 85

Conread position: 187-409
Cow position:
Alignm length: 223
Alignm identity: 172
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 75, 0

Conread position: 202-525
Cow position:
Alignm length: 328
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 66

Conread position: 224-538
Cow position:
Alignm length: 322
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 44

Conread position: 226-371
Cow position:
Alignm length: 158
Alignm identity: 126
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 237-524
Cow position:
Alignm length: 294
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 140

Conread position: 258-525
Cow position:
Alignm length: 272
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 65

Conread position: 276-525
Cow position:
Alignm length: 254
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 48

Conread position: 283-525
Cow position:
Alignm length: 247
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 89

Show alignments to all cow chromosomes.