Cow genome map
| Conread name: | rcki31_m16.y1 |
| Conread position: | 1-199 |
| Cow position: | chr12:7651267-7651476 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 75, 13 |
| Conread position: | 1-340 |
| Cow position: | chr12:21946548-21946217 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 47 |
| Conread position: | 1-362 |
| Cow position: | chr12:8172478-8172106 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 219 |
| Conread position: | 1-472 |
| Cow position: | chr12:21452404-21452892 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 284 |
| Conread position: | 1-504 |
| Cow position: | chr12:21212357-21211837 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 193 |
| Conread position: | 1-516 |
| Cow position: | chr12:32088808-32088308 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 280 |
| Conread position: | 1-525 |
| Cow position: | chr12:1774334-1774884 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 48 |
| Conread position: | 1-525 |
| Cow position: | chr12:3180982-3180448 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 284 |
| Conread position: | 1-525 |
| Cow position: | chr12:21718599-21719144 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 266 |
| Conread position: | 1-525 |
| Cow position: | chr12:27506076-27506616 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 284 |
| Conread position: | 1-525 |
| Cow position: | chr12:35367952-35367438 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 51 |
| Conread position: | 1-533 |
| Cow position: | chr12:21611170-21610627 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 278 |
| Conread position: | 1-558 |
| Cow position: | chr12:5110494-5111061 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 48 |
| Conread position: | 2-514 |
| Cow position: | chr12:35311358-35311869 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 111 |
| Conread position: | 5-248 |
| Cow position: | chr12:22286367-22286625 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 65, 25 |
| Conread position: | 5-425 |
| Cow position: | chr12:1093470-1093038 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 177 |
| Conread position: | 5-515 |
| Cow position: | chr12:27435596-27436100 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 141 |
| Conread position: | 5-525 |
| Cow position: | chr12:25313144-25313681 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 176 |
| Conread position: | 6-289 |
| Cow position: | chr12:21557515-21557216 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 279 |
| Conread position: | 6-335 |
| Cow position: | chr12:6186583-6186923 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 43 |
| Conread position: | 6-425 |
| Cow position: | chr12:31328762-31329194 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 32 |
| Conread position: | 6-478 |
| Cow position: | chr12:21057148-21057632 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 66 |
| Conread position: | 6-525 |
| Cow position: | chr12:1173453-1173977 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 40 |
| Conread position: | 6-525 |
| Cow position: | chr12:3716705-3717241 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 279 |
| Conread position: | 6-525 |
| Cow position: | chr12:9988132-9988655 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 105 |
| Conread position: | 6-525 |
| Cow position: | chr12:12754598-12755122 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 81 |
| Conread position: | 6-525 |
| Cow position: | chr12:17969531-17969021 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 36 |
| Conread position: | 6-525 |
| Cow position: | chr12:18586240-18585705 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 16 |
| Conread position: | 6-525 |
| Cow position: | chr12:20459154-20459686 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 263 |
| Conread position: | 6-525 |
| Cow position: | chr12:27994669-27994133 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 279 |
| Conread position: | 6-525 |
| Cow position: | chr12:28763447-28763967 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 240 |
| Conread position: | 6-525 |
| Cow position: | chr12:41337664-41338198 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 279 |
| Conread position: | 6-525 |
| Cow position: | chr12:42855985-42856499 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 342, 38 |
| Conread position: | 6-530 |
| Cow position: | chr12:22202113-22202640 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 279 |
| Conread position: | 7-349 |
| Cow position: | chr12:23475317-23474962 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 264 |
| Conread position: | 7-373 |
| Cow position: | chr12:3070429-3070042 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 285 |
| Conread position: | 7-399 |
| Cow position: | chr12:26869685-26870094 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 230 |
| Conread position: | 7-523 |
| Cow position: | chr12:15939314-15939827 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 54 |
| Conread position: | 7-525 |
| Cow position: | chr12:758970-758453 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 42 |
| Conread position: | 7-530 |
| Cow position: | chr12:10931653-10931113 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 279 |
| Conread position: | 7-543 |
| Cow position: | chr12:15231594-15231046 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 170 |
| Conread position: | 16-227 |
| Cow position: | chr12:38774647-38774422 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 59, 165 |
| Conread position: | 16-525 |
| Cow position: | chr12:11582711-11582202 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 56 |
| Conread position: | 23-392 |
| Cow position: | chr12:24206081-24205704 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 158 |
| Conread position: | 32-525 |
| Cow position: | chr12:25096726-25097231 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 250 |
| Conread position: | 76-525 |
| Cow position: | chr12:23159024-23159480 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 84 |
| Conread position: | 80-538 |
| Cow position: | chr12:19871701-19871233 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 94 |
| Conread position: | 81-315 |
| Cow position: | chr12:1345553-1345316 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 189 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 6, 14 |
| Conread position: | 92-522 |
| Cow position: | chr12:20994293-20994729 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 184 |
| Conread position: | 95-525 |
| Cow position: | chr12:8774135-8773698 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 87 |
| Conread position: | 120-525 |
| Cow position: | chr12:31829007-31829417 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 153 |
| Conread position: | 120-538 |
| Cow position: | chr12:19862129-19861704 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 290 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 189, 31 |
| Conread position: | 122-522 |
| Cow position: | chr12:21484842-21484447 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 47 |
| Conread position: | 151-538 |
| Cow position: | chr12:21862032-21862407 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 12 |
| Conread position: | 163-549 |
| Cow position: | chr12:27929397-27929781 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 105 |
| Conread position: | 164-364 |
| Cow position: | chr12:1108505-1108317 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 164-525 |
| Cow position: | chr12:20847526-20847171 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 54 |
| Conread position: | 165-525 |
| Cow position: | chr12:1408210-1407864 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 103 |
| Conread position: | 172-449 |
| Cow position: | chr12:18936214-18935941 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 195-413 |
| Cow position: | chr12:20317663-20317461 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 143, 54 |
| Conread position: | 201-525 |
| Cow position: | chr12:42232666-42232342 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 67 |
| Conread position: | 220-525 |
| Cow position: | chr12:19040951-19040646 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 16 |
| Conread position: | 246-525 |
| Cow position: | chr12:27852630-27852912 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 22 |
Show alignments to all cow chromosomes.