Cow genome map

Conread name: rcki31_m16.y1

Conread position: 1-198
Cow position:
Alignm length: 212
Alignm identity: 151
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 92, 70

Conread position: 1-288
Cow position:
Alignm length: 304
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 203

Conread position: 1-311
Cow position:
Alignm length: 330
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 181

Conread position: 1-364
Cow position:
Alignm length: 383
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 156

Conread position: 1-397
Cow position:
Alignm length: 407
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 157

Conread position: 1-410
Cow position:
Alignm length: 418
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 75

Conread position: 1-486
Cow position:
Alignm length: 514
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 24

Conread position: 1-486
Cow position:
Alignm length: 515
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 153

Conread position: 1-522
Cow position:
Alignm length: 530
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 53

Conread position: 1-523
Cow position:
Alignm length: 544
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 284

Conread position: 1-525
Cow position:
Alignm length: 548
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 285

Conread position: 1-525
Cow position:
Alignm length: 536
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 48

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 148

Conread position: 1-525
Cow position:
Alignm length: 548
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 285

Conread position: 1-525
Cow position:
Alignm length: 547
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 176

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 48

Conread position: 1-525
Cow position:
Alignm length: 557
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 190

Conread position: 1-525
Cow position:
Alignm length: 539
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 48

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-529
Cow position:
Alignm length: 553
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-536
Cow position:
Alignm length: 558
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 176

Conread position: 2-529
Cow position:
Alignm length: 539
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 112

Conread position: 6-309
Cow position:
Alignm length: 321
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 183

Conread position: 6-361
Cow position:
Alignm length: 370
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 36

Conread position: 6-374
Cow position:
Alignm length: 381
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 20

Conread position: 6-425
Cow position:
Alignm length: 439
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 145

Conread position: 6-469
Cow position:
Alignm length: 487
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 53

Conread position: 6-519
Cow position:
Alignm length: 543
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 29

Conread position: 6-521
Cow position:
Alignm length: 538
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 175

Conread position: 6-525
Cow position:
Alignm length: 540
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 278

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 554
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 88

Conread position: 6-525
Cow position:
Alignm length: 537
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 17

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 212

Conread position: 6-525
Cow position:
Alignm length: 540
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 227

Conread position: 6-531
Cow position:
Alignm length: 554
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 175

Conread position: 6-549
Cow position:
Alignm length: 571
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 50

Conread position: 7-312
Cow position:
Alignm length: 321
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 67

Conread position: 7-425
Cow position:
Alignm length: 435
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 112

Conread position: 7-495
Cow position:
Alignm length: 505
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 156

Conread position: 7-511
Cow position:
Alignm length: 517
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 39

Conread position: 7-517
Cow position:
Alignm length: 530
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 42

Conread position: 7-523
Cow position:
Alignm length: 539
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 31

Conread position: 7-523
Cow position:
Alignm length: 538
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 182

Conread position: 7-525
Cow position:
Alignm length: 540
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 278

Conread position: 7-525
Cow position:
Alignm length: 540
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 232

Conread position: 7-525
Cow position:
Alignm length: 540
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 262

Conread position: 7-525
Cow position:
Alignm length: 539
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 19

Conread position: 7-527
Cow position:
Alignm length: 541
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 281

Conread position: 8-442
Cow position:
Alignm length: 453
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 27

Conread position: 8-525
Cow position:
Alignm length: 539
Alignm identity: 351
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 65, 75

Conread position: 9-260
Cow position:
Alignm length: 264
Alignm identity: 191
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 36, 99

Conread position: 13-371
Cow position:
Alignm length: 376
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 12

Conread position: 16-324
Cow position:
Alignm length: 315
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 80

Conread position: 18-525
Cow position:
Alignm length: 533
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 270

Conread position: 25-525
Cow position:
Alignm length: 526
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 13

Conread position: 47-340
Cow position:
Alignm length: 308
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 129

Conread position: 55-522
Cow position:
Alignm length: 489
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 126

Conread position: 75-358
Cow position:
Alignm length: 293
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 29

Conread position: 76-525
Cow position:
Alignm length: 477
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 101

Conread position: 119-515
Cow position:
Alignm length: 408
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 123

Conread position: 120-524
Cow position:
Alignm length: 417
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 49

Conread position: 120-525
Cow position:
Alignm length: 416
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 57

Conread position: 120-525
Cow position:
Alignm length: 413
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 153

Conread position: 122-525
Cow position:
Alignm length: 414
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 56

Conread position: 152-354
Cow position:
Alignm length: 203
Alignm identity: 155
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 11, 0

Conread position: 152-496
Cow position:
Alignm length: 350
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 11

Conread position: 163-371
Cow position:
Alignm length: 209
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 202-411
Cow position:
Alignm length: 210
Alignm identity: 154
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 54, 0

Conread position: 202-529
Cow position:
Alignm length: 330
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 68

Conread position: 204-532
Cow position:
Alignm length: 334
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 64

Conread position: 205-406
Cow position:
Alignm length: 202
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 0

Conread position: 222-484
Cow position:
Alignm length: 269
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 227-525
Cow position:
Alignm length: 303
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 41

Conread position: 234-384
Cow position:
Alignm length: 151
Alignm identity: 121
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 34, 0

Conread position: 241-525
Cow position:
Alignm length: 289
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 27

Conread position: 249-525
Cow position:
Alignm length: 281
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 19

Conread position: 255-463
Cow position:
Alignm length: 209
Alignm identity: 157
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 23, 0

Conread position: 263-525
Cow position:
Alignm length: 264
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 62

Conread position: 277-423
Cow position:
Alignm length: 147
Alignm identity: 119
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 96, 0

Conread position: 280-529
Cow position:
Alignm length: 254
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 93

Conread position: 282-525
Cow position:
Alignm length: 248
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 91

Show alignments to all cow chromosomes.