Cow genome map
| Conread name: | rcki31_m16.y1 |
| Conread position: | 1-198 |
| Cow position: | chr13:25694831-25694622 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 92, 70 |
| Conread position: | 1-288 |
| Cow position: | chr13:19638803-19638502 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 203 |
| Conread position: | 1-311 |
| Cow position: | chr13:49195313-49194988 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 181 |
| Conread position: | 1-364 |
| Cow position: | chr13:13312954-13312577 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 156 |
| Conread position: | 1-397 |
| Cow position: | chr13:11821945-11822324 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 157 |
| Conread position: | 1-410 |
| Cow position: | chr13:49805592-49805999 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 75 |
| Conread position: | 1-486 |
| Cow position: | chr13:9048964-9048458 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 24 |
| Conread position: | 1-486 |
| Cow position: | chr13:33162313-33161804 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 153 |
| Conread position: | 1-522 |
| Cow position: | chr13:5622377-5622872 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 53 |
| Conread position: | 1-523 |
| Cow position: | chr13:30468753-30469289 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 284 |
| Conread position: | 1-525 |
| Cow position: | chr13:3021120-3021661 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 284 |
| Conread position: | 1-525 |
| Cow position: | chr13:4487218-4486677 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 284 |
| Conread position: | 1-525 |
| Cow position: | chr13:4944755-4944214 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 284 |
| Conread position: | 1-525 |
| Cow position: | chr13:5229609-5230142 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 285 |
| Conread position: | 1-525 |
| Cow position: | chr13:11826418-11826928 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 48 |
| Conread position: | 1-525 |
| Cow position: | chr13:14302622-14303159 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 148 |
| Conread position: | 1-525 |
| Cow position: | chr13:14399710-14400253 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 285 |
| Conread position: | 1-525 |
| Cow position: | chr13:16248580-16249121 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 176 |
| Conread position: | 1-525 |
| Cow position: | chr13:28131868-28131330 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 48 |
| Conread position: | 1-525 |
| Cow position: | chr13:34298955-34298404 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 190 |
| Conread position: | 1-525 |
| Cow position: | chr13:34905228-34905750 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 48 |
| Conread position: | 1-525 |
| Cow position: | chr13:58313697-58313156 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 284 |
| Conread position: | 1-529 |
| Cow position: | chr13:2725442-2725990 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 284 |
| Conread position: | 1-536 |
| Cow position: | chr13:11795339-11795886 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 176 |
| Conread position: | 2-529 |
| Cow position: | chr13:47357239-47357760 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 112 |
| Conread position: | 6-309 |
| Cow position: | chr13:43594189-43593877 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 183 |
| Conread position: | 6-361 |
| Cow position: | chr13:48627896-48627540 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 36 |
| Conread position: | 6-374 |
| Cow position: | chr13:28413937-28414313 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 20 |
| Conread position: | 6-425 |
| Cow position: | chr13:15280648-15280215 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 145 |
| Conread position: | 6-469 |
| Cow position: | chr13:42114643-42115114 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 53 |
| Conread position: | 6-519 |
| Cow position: | chr13:18815342-18815874 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 29 |
| Conread position: | 6-521 |
| Cow position: | chr13:3314983-3314456 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 175 |
| Conread position: | 6-525 |
| Cow position: | chr13:13903215-13902681 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 278 |
| Conread position: | 6-525 |
| Cow position: | chr13:18329765-18330301 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 279 |
| Conread position: | 6-525 |
| Cow position: | chr13:34345662-34345128 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 279 |
| Conread position: | 6-525 |
| Cow position: | chr13:34941028-34940487 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 88 |
| Conread position: | 6-525 |
| Cow position: | chr13:35760900-35760373 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 17 |
| Conread position: | 6-525 |
| Cow position: | chr13:41337323-41337845 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 212 |
| Conread position: | 6-525 |
| Cow position: | chr13:42088123-42088634 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 227 |
| Conread position: | 6-531 |
| Cow position: | chr13:21905552-21906099 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 175 |
| Conread position: | 6-549 |
| Cow position: | chr13:32550104-32549562 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 50 |
| Conread position: | 7-312 |
| Cow position: | chr13:60967422-60967738 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 67 |
| Conread position: | 7-425 |
| Cow position: | chr13:39951969-39951547 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 112 |
| Conread position: | 7-495 |
| Cow position: | chr13:13126369-13126861 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 156 |
| Conread position: | 7-511 |
| Cow position: | chr13:38013306-38013812 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 39 |
| Conread position: | 7-517 |
| Cow position: | chr13:26822780-26823286 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 42 |
| Conread position: | 7-523 |
| Cow position: | chr13:22774659-22774129 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 31 |
| Conread position: | 7-523 |
| Cow position: | chr13:22780630-22781158 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 182 |
| Conread position: | 7-525 |
| Cow position: | chr13:6664769-6665304 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 278 |
| Conread position: | 7-525 |
| Cow position: | chr13:9301516-9300995 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 232 |
| Conread position: | 7-525 |
| Cow position: | chr13:34871319-34870784 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 262 |
| Conread position: | 7-525 |
| Cow position: | chr13:43974599-43975127 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 19 |
| Conread position: | 7-527 |
| Cow position: | chr13:20778108-20778635 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 281 |
| Conread position: | 8-442 |
| Cow position: | chr13:39944845-39944414 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 27 |
| Conread position: | 8-525 |
| Cow position: | chr13:26986560-26987087 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 351 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 65, 75 |
| Conread position: | 9-260 |
| Cow position: | chr13:25825634-25825896 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 36, 99 |
| Conread position: | 13-371 |
| Cow position: | chr13:32152436-32152804 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 12 |
| Conread position: | 16-324 |
| Cow position: | chr13:34112921-34113227 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 80 |
| Conread position: | 18-525 |
| Cow position: | chr13:31510494-31509971 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 270 |
| Conread position: | 25-525 |
| Cow position: | chr13:20571373-20571886 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 47-340 |
| Cow position: | chr13:47189330-47189027 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 129 |
| Conread position: | 55-522 |
| Cow position: | chr13:60426341-60425862 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 126 |
| Conread position: | 75-358 |
| Cow position: | chr13:15446731-15447013 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 29 |
| Conread position: | 76-525 |
| Cow position: | chr13:54238162-54238625 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 101 |
| Conread position: | 119-515 |
| Cow position: | chr13:7609380-7608978 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 123 |
| Conread position: | 120-524 |
| Cow position: | chr13:20563754-20564158 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 49 |
| Conread position: | 120-525 |
| Cow position: | chr13:22715123-22714724 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 57 |
| Conread position: | 120-525 |
| Cow position: | chr13:47574338-47574734 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 153 |
| Conread position: | 122-525 |
| Cow position: | chr13:58740801-58740401 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 56 |
| Conread position: | 152-354 |
| Cow position: | chr13:32016963-32016769 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 152-496 |
| Cow position: | chr13:33333186-33333528 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 11 |
| Conread position: | 163-371 |
| Cow position: | chr13:26381902-26381698 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 202-411 |
| Cow position: | chr13:33351588-33351397 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 202-529 |
| Cow position: | chr13:34321831-34322154 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 68 |
| Conread position: | 204-532 |
| Cow position: | chr13:52459024-52459344 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 64 |
| Conread position: | 205-406 |
| Cow position: | chr13:30243471-30243274 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 222-484 |
| Cow position: | chr13:33500811-33501074 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 227-525 |
| Cow position: | chr13:34762869-34763153 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 41 |
| Conread position: | 234-384 |
| Cow position: | chr13:29721636-29721490 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 241-525 |
| Cow position: | chr13:43120441-43120725 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 27 |
| Conread position: | 249-525 |
| Cow position: | chr13:30306286-30306010 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 19 |
| Conread position: | 255-463 |
| Cow position: | chr13:21910117-21910312 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 263-525 |
| Cow position: | chr13:36347042-36347296 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 62 |
| Conread position: | 277-423 |
| Cow position: | chr13:60489179-60489036 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 280-529 |
| Cow position: | chr13:34039271-34039521 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 93 |
| Conread position: | 282-525 |
| Cow position: | chr13:19638221-19637977 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 91 |
Show alignments to all cow chromosomes.