Cow genome map

Conread name: rcki31_m16.y1

Conread position: 1-149
Cow position: chr14:1788827-1788668 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 74, 0

Conread position: 1-150
Cow position: chr14:17900160-17900304 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 122, 75

Conread position: 1-235
Cow position: chr14:28379084-28379337 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 189
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 74, 32

Conread position: 1-259
Cow position: chr14:39433597-39433317 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 214
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 78, 185

Conread position: 1-292
Cow position: chr14:1802432-1802130 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 250

Conread position: 1-334
Cow position: chr14:45996346-45996680 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 240
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 74, 242

Conread position: 1-352
Cow position: chr14:18497220-18496856 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-402
Cow position: chr14:19524287-19523873 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-424
Cow position: chr14:12066209-12066649 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 283

Conread position: 1-475
Cow position: chr14:24980782-24980291 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-507
Cow position: chr14:41716984-41717499 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 181

Conread position: 1-508
Cow position: chr14:5501158-5500642 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 176

Conread position: 1-511
Cow position: chr14:44382513-44381989 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 277

Conread position: 1-511
Cow position: chr14:49329198-49328679 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 210

Conread position: 1-521
Cow position: chr14:41478972-41478447 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 122

Conread position: 1-522
Cow position: chr14:13582101-13581566 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 282

Conread position: 1-523
Cow position: chr14:32450190-32449666 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 62

Conread position: 1-523
Cow position: chr14:50114579-50114063 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 159

Conread position: 1-523
Cow position: chr14:50137503-50136968 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-524
Cow position: chr14:45739094-45739625 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 48

Conread position: 1-524
Cow position: chr14:48828455-48827900 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 185

Conread position: 1-525
Cow position: chr14:424407-423881 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 75

Conread position: 1-525
Cow position: chr14:8884652-8885186 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 18

Conread position: 1-525
Cow position: chr14:8998839-8998309 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 158

Conread position: 1-525
Cow position: chr14:11150681-11151222 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 284

Conread position: 1-525
Cow position: chr14:12739814-12740355 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 284

Conread position: 1-525
Cow position: chr14:12903568-12903028 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 202

Conread position: 1-525
Cow position: chr14:13769061-13769596 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 249

Conread position: 1-525
Cow position: chr14:15272030-15272567 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-525
Cow position: chr14:19490218-19489675 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 268

Conread position: 1-525
Cow position: chr14:30476109-30476647 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 208

Conread position: 1-525
Cow position: chr14:32583800-32584331 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 24

Conread position: 1-525
Cow position: chr14:34906760-34906220 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 284

Conread position: 1-525
Cow position: chr14:42626446-42626981 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 25

Conread position: 1-525
Cow position: chr14:45186599-45187140 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 202

Conread position: 1-525
Cow position: chr14:49995311-49995849 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 283

Conread position: 1-536
Cow position: chr14:30664689-30665242 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 294

Conread position: 1-538
Cow position: chr14:24923017-24922462 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 255

Conread position: 2-522
Cow position: chr14:44026582-44027120 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 283

Conread position: 3-394
Cow position: chr14:21728252-21727852 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 67

Conread position: 3-525
Cow position: chr14:48495463-48494940 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 173

Conread position: 5-425
Cow position: chr14:20786613-20786182 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 278

Conread position: 5-443
Cow position: chr14:28796356-28796801 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 176

Conread position: 5-525
Cow position: chr14:36709850-36710368 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 101

Conread position: 5-537
Cow position: chr14:8102450-8102992 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 272

Conread position: 6-234
Cow position: chr14:38143451-38143209 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 190
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 67, 211

Conread position: 6-284
Cow position: chr14:38379971-38380248 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 216
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 69, 91

Conread position: 6-325
Cow position: chr14:45300152-45299824 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 187

Conread position: 6-356
Cow position: chr14:11474097-11474456 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 258

Conread position: 6-424
Cow position: chr14:37883229-37882792 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 177

Conread position: 6-424
Cow position: chr14:45085147-45084714 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 155

Conread position: 6-450
Cow position: chr14:32471672-32472131 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 149

Conread position: 6-495
Cow position: chr14:12834080-12833576 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 279

Conread position: 6-506
Cow position: chr14:193379-192863 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 280

Conread position: 6-525
Cow position: chr14:7476086-7475551 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 258

Conread position: 6-525
Cow position: chr14:13308961-13308426 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 280

Conread position: 6-525
Cow position: chr14:21201146-21200616 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 40

Conread position: 6-525
Cow position: chr14:27040156-27040689 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 332

Conread position: 6-525
Cow position: chr14:28993123-28993654 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 160

Conread position: 6-525
Cow position: chr14:41446234-41445699 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 34

Conread position: 6-525
Cow position: chr14:48251226-48251755 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 149

Conread position: 6-529
Cow position: chr14:5532568-5532030 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 277

Conread position: 7-369
Cow position: chr14:14786089-14786465 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 179

Conread position: 7-524
Cow position: chr14:44555069-44554545 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 12

Conread position: 8-417
Cow position: chr14:42849391-42849798 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 23

Conread position: 10-360
Cow position: chr14:46225393-46225040 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 76

Conread position: 13-523
Cow position: chr14:35382277-35382778 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 173

Conread position: 13-525
Cow position: chr14:17690344-17689822 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 195

Conread position: 13-525
Cow position: chr14:46303128-46302599 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 272

Conread position: 29-332
Cow position: chr14:38016759-38016438 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 258

Conread position: 43-523
Cow position: chr14:47593544-47593049 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 119

Conread position: 47-536
Cow position: chr14:17756877-17757356 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 119

Conread position: 73-371
Cow position: chr14:34370692-34370382 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 143

Conread position: 73-511
Cow position: chr14:30738803-30738359 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 22

Conread position: 80-523
Cow position: chr14:30593131-30593564 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 30

Conread position: 95-525
Cow position: chr14:44772704-44773128 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 295
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 27, 145

Conread position: 120-375
Cow position: chr14:45067064-45066812 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 49

Conread position: 120-424
Cow position: chr14:48360782-48361070 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 49

Conread position: 120-522
Cow position: chr14:41219944-41220351 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 153

Conread position: 163-525
Cow position: chr14:16916671-16917033 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 105

Conread position: 163-525
Cow position: chr14:16996982-16997344 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 105

Conread position: 188-429
Cow position: chr14:33680149-33679905 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 183
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 188, 80

Conread position: 190-525
Cow position: chr14:50145257-50144920 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 78

Conread position: 196-525
Cow position: chr14:8900250-8900582 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 56

Conread position: 199-525
Cow position: chr14:13683586-13683260 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 69

Conread position: 219-525
Cow position: chr14:36289298-36288995 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 49

Conread position: 221-440
Cow position: chr14:33550433-33550651 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 171
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 204, 55

Conread position: 243-424
Cow position: chr14:45533345-45533522 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 140
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 25, 0

Conread position: 243-523
Cow position: chr14:46124085-46123816 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 251-527
Cow position: chr14:28208315-28208589 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 17

Conread position: 255-525
Cow position: chr14:20774127-20773859 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 13

Conread position: 276-421
Cow position: chr14:38380526-38380666 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 46, 0

Conread position: 282-525
Cow position: chr14:19325321-19325565 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 91

Show alignments to all cow chromosomes.