Cow genome map

Conread name: rcki31_m16.y1

Conread position: 1-149
Cow position:
Alignm length: 160
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 74, 0

Conread position: 1-150
Cow position:
Alignm length: 154
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 122, 75

Conread position: 1-235
Cow position:
Alignm length: 256
Alignm identity: 189
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 74, 32

Conread position: 1-259
Cow position:
Alignm length: 282
Alignm identity: 214
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 78, 185

Conread position: 1-292
Cow position:
Alignm length: 310
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 250

Conread position: 1-334
Cow position:
Alignm length: 342
Alignm identity: 240
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 74, 242

Conread position: 1-352
Cow position:
Alignm length: 375
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-402
Cow position:
Alignm length: 419
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-424
Cow position:
Alignm length: 445
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 283

Conread position: 1-475
Cow position:
Alignm length: 496
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-507
Cow position:
Alignm length: 533
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 181

Conread position: 1-508
Cow position:
Alignm length: 534
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 176

Conread position: 1-511
Cow position:
Alignm length: 532
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 277

Conread position: 1-511
Cow position:
Alignm length: 528
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 210

Conread position: 1-521
Cow position:
Alignm length: 537
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 122

Conread position: 1-522
Cow position:
Alignm length: 541
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 282

Conread position: 1-523
Cow position:
Alignm length: 540
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 62

Conread position: 1-523
Cow position:
Alignm length: 538
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 159

Conread position: 1-523
Cow position:
Alignm length: 544
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-524
Cow position:
Alignm length: 545
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 48

Conread position: 1-524
Cow position:
Alignm length: 562
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 185

Conread position: 1-525
Cow position:
Alignm length: 543
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 75

Conread position: 1-525
Cow position:
Alignm length: 544
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 18

Conread position: 1-525
Cow position:
Alignm length: 541
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 158

Conread position: 1-525
Cow position:
Alignm length: 547
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 284

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 284

Conread position: 1-525
Cow position:
Alignm length: 547
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 202

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 249

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-525
Cow position:
Alignm length: 550
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 268

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 208

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 24

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 284

Conread position: 1-525
Cow position:
Alignm length: 548
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 25

Conread position: 1-525
Cow position:
Alignm length: 548
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 202

Conread position: 1-525
Cow position:
Alignm length: 545
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 283

Conread position: 1-536
Cow position:
Alignm length: 564
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 294

Conread position: 1-538
Cow position:
Alignm length: 564
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 255

Conread position: 2-522
Cow position:
Alignm length: 544
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 283

Conread position: 3-394
Cow position:
Alignm length: 407
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 67

Conread position: 3-525
Cow position:
Alignm length: 540
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 173

Conread position: 5-425
Cow position:
Alignm length: 436
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 278

Conread position: 5-443
Cow position:
Alignm length: 461
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 176

Conread position: 5-525
Cow position:
Alignm length: 529
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 101

Conread position: 5-537
Cow position:
Alignm length: 553
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 272

Conread position: 6-234
Cow position:
Alignm length: 245
Alignm identity: 190
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 67, 211

Conread position: 6-284
Cow position:
Alignm length: 291
Alignm identity: 216
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 69, 91

Conread position: 6-325
Cow position:
Alignm length: 338
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 187

Conread position: 6-356
Cow position:
Alignm length: 363
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 258

Conread position: 6-424
Cow position:
Alignm length: 445
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 177

Conread position: 6-424
Cow position:
Alignm length: 443
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 155

Conread position: 6-450
Cow position:
Alignm length: 472
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 149

Conread position: 6-495
Cow position:
Alignm length: 511
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 279

Conread position: 6-506
Cow position:
Alignm length: 522
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 280

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 258

Conread position: 6-525
Cow position:
Alignm length: 542
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 280

Conread position: 6-525
Cow position:
Alignm length: 540
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 40

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 332

Conread position: 6-525
Cow position:
Alignm length: 538
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 160

Conread position: 6-525
Cow position:
Alignm length: 547
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 34

Conread position: 6-525
Cow position:
Alignm length: 542
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 149

Conread position: 6-529
Cow position:
Alignm length: 543
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 277

Conread position: 7-369
Cow position:
Alignm length: 380
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 179

Conread position: 7-524
Cow position:
Alignm length: 540
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 12

Conread position: 8-417
Cow position:
Alignm length: 425
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 23

Conread position: 10-360
Cow position:
Alignm length: 360
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 76

Conread position: 13-523
Cow position:
Alignm length: 528
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 173

Conread position: 13-525
Cow position:
Alignm length: 535
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 195

Conread position: 13-525
Cow position:
Alignm length: 535
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 272

Conread position: 29-332
Cow position:
Alignm length: 323
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 258

Conread position: 43-523
Cow position:
Alignm length: 508
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 119

Conread position: 47-536
Cow position:
Alignm length: 509
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 119

Conread position: 73-371
Cow position:
Alignm length: 314
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 143

Conread position: 73-511
Cow position:
Alignm length: 457
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 22

Conread position: 80-523
Cow position:
Alignm length: 452
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 30

Conread position: 95-525
Cow position:
Alignm length: 441
Alignm identity: 295
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 27, 145

Conread position: 120-375
Cow position:
Alignm length: 262
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 49

Conread position: 120-424
Cow position:
Alignm length: 311
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 49

Conread position: 120-522
Cow position:
Alignm length: 412
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 153

Conread position: 163-525
Cow position:
Alignm length: 367
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 105

Conread position: 163-525
Cow position:
Alignm length: 367
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 105

Conread position: 188-429
Cow position:
Alignm length: 246
Alignm identity: 183
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 188, 80

Conread position: 190-525
Cow position:
Alignm length: 342
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 78

Conread position: 196-525
Cow position:
Alignm length: 338
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 56

Conread position: 199-525
Cow position:
Alignm length: 331
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 69

Conread position: 219-525
Cow position:
Alignm length: 313
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 49

Conread position: 221-440
Cow position:
Alignm length: 224
Alignm identity: 171
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 204, 55

Conread position: 243-424
Cow position:
Alignm length: 182
Alignm identity: 140
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 25, 0

Conread position: 243-523
Cow position:
Alignm length: 281
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 251-527
Cow position:
Alignm length: 281
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 17

Conread position: 255-525
Cow position:
Alignm length: 277
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 13

Conread position: 276-421
Cow position:
Alignm length: 146
Alignm identity: 115
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 46, 0

Conread position: 282-525
Cow position:
Alignm length: 248
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 91

Show alignments to all cow chromosomes.