Cow genome map

Conread name: rcki31_m16.y1

Conread position: 1-156
Cow position:
Alignm length: 169
Alignm identity: 127
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 74, 162

Conread position: 1-218
Cow position:
Alignm length: 237
Alignm identity: 176
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 74, 0

Conread position: 1-266
Cow position:
Alignm length: 267
Alignm identity: 172
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 90, 144

Conread position: 1-309
Cow position:
Alignm length: 326
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-326
Cow position:
Alignm length: 344
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 285

Conread position: 1-335
Cow position:
Alignm length: 352
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-352
Cow position:
Alignm length: 367
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 177

Conread position: 1-357
Cow position:
Alignm length: 379
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 25

Conread position: 1-361
Cow position:
Alignm length: 377
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 283

Conread position: 1-391
Cow position:
Alignm length: 408
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-402
Cow position:
Alignm length: 420
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 285

Conread position: 1-411
Cow position:
Alignm length: 428
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 265

Conread position: 1-423
Cow position:
Alignm length: 440
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 218

Conread position: 1-425
Cow position:
Alignm length: 438
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 287

Conread position: 1-425
Cow position:
Alignm length: 436
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 96

Conread position: 1-436
Cow position:
Alignm length: 459
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 25

Conread position: 1-479
Cow position:
Alignm length: 502
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 286

Conread position: 1-498
Cow position:
Alignm length: 514
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 30

Conread position: 1-500
Cow position:
Alignm length: 518
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 209

Conread position: 1-504
Cow position:
Alignm length: 522
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 32

Conread position: 1-516
Cow position:
Alignm length: 526
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 30

Conread position: 1-523
Cow position:
Alignm length: 544
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-524
Cow position:
Alignm length: 546
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 148

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-525
Cow position:
Alignm length: 547
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 289

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 42

Conread position: 1-525
Cow position:
Alignm length: 541
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 162

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 277

Conread position: 1-525
Cow position:
Alignm length: 545
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 283

Conread position: 1-525
Cow position:
Alignm length: 544
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 72

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-525
Cow position:
Alignm length: 547
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 279

Conread position: 1-525
Cow position:
Alignm length: 547
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 286

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-525
Cow position:
Alignm length: 541
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 48

Conread position: 1-525
Cow position:
Alignm length: 542
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 18

Conread position: 1-525
Cow position:
Alignm length: 560
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 297

Conread position: 1-525
Cow position:
Alignm length: 549
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 182

Conread position: 1-530
Cow position:
Alignm length: 555
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 390

Conread position: 1-538
Cow position:
Alignm length: 553
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 269

Conread position: 1-539
Cow position:
Alignm length: 568
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 48

Conread position: 1-549
Cow position:
Alignm length: 570
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-578
Cow position:
Alignm length: 599
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 248

Conread position: 2-525
Cow position:
Alignm length: 545
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 283

Conread position: 5-294
Cow position:
Alignm length: 307
Alignm identity: 220
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 71, 259

Conread position: 5-371
Cow position:
Alignm length: 381
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 205

Conread position: 5-449
Cow position:
Alignm length: 467
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 175

Conread position: 6-323
Cow position:
Alignm length: 329
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 306

Conread position: 6-367
Cow position:
Alignm length: 381
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 175

Conread position: 6-374
Cow position:
Alignm length: 384
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 271

Conread position: 6-395
Cow position:
Alignm length: 408
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 175

Conread position: 6-425
Cow position:
Alignm length: 433
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 167

Conread position: 6-505
Cow position:
Alignm length: 522
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 385

Conread position: 6-515
Cow position:
Alignm length: 523
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 84

Conread position: 6-524
Cow position:
Alignm length: 540
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-524
Cow position:
Alignm length: 537
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 280

Conread position: 6-524
Cow position:
Alignm length: 547
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 285

Conread position: 6-524
Cow position:
Alignm length: 541
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 99

Conread position: 6-525
Cow position:
Alignm length: 542
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 175

Conread position: 6-525
Cow position:
Alignm length: 535
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 177

Conread position: 6-525
Cow position:
Alignm length: 530
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 82

Conread position: 6-525
Cow position:
Alignm length: 540
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 223

Conread position: 6-525
Cow position:
Alignm length: 545
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 243

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 539
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 270

Conread position: 6-525
Cow position:
Alignm length: 540
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 20

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 273

Conread position: 6-525
Cow position:
Alignm length: 538
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 99

Conread position: 6-537
Cow position:
Alignm length: 548
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 45

Conread position: 6-538
Cow position:
Alignm length: 552
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 172

Conread position: 6-538
Cow position:
Alignm length: 554
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 279

Conread position: 7-239
Cow position:
Alignm length: 247
Alignm identity: 181
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 47, 185

Conread position: 7-477
Cow position:
Alignm length: 492
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 187

Conread position: 7-523
Cow position:
Alignm length: 536
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 282

Conread position: 7-525
Cow position:
Alignm length: 545
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 277

Conread position: 7-525
Cow position:
Alignm length: 540
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 37

Conread position: 7-530
Cow position:
Alignm length: 549
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 197

Conread position: 8-484
Cow position:
Alignm length: 501
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 209

Conread position: 8-525
Cow position:
Alignm length: 542
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 17

Conread position: 9-453
Cow position:
Alignm length: 463
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 155

Conread position: 14-505
Cow position:
Alignm length: 506
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 62

Conread position: 15-404
Cow position:
Alignm length: 410
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 168

Conread position: 15-516
Cow position:
Alignm length: 517
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 80

Conread position: 15-525
Cow position:
Alignm length: 540
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 166

Conread position: 15-534
Cow position:
Alignm length: 533
Alignm identity: 341
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 59, 36

Conread position: 16-391
Cow position:
Alignm length: 396
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 158

Conread position: 16-477
Cow position:
Alignm length: 485
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 250

Conread position: 20-525
Cow position:
Alignm length: 523
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 261

Conread position: 29-544
Cow position:
Alignm length: 538
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 261

Conread position: 35-405
Cow position:
Alignm length: 375
Alignm identity: 263
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 88, 59

Conread position: 41-281
Cow position:
Alignm length: 258
Alignm identity: 194
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 34, 239

Conread position: 42-525
Cow position:
Alignm length: 505
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 154

Conread position: 44-524
Cow position:
Alignm length: 502
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 241

Conread position: 55-411
Cow position:
Alignm length: 369
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 120

Conread position: 57-334
Cow position:
Alignm length: 297
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 125

Conread position: 68-525
Cow position:
Alignm length: 477
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 215

Conread position: 87-525
Cow position:
Alignm length: 452
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 56

Conread position: 87-525
Cow position:
Alignm length: 450
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 187

Conread position: 103-525
Cow position:
Alignm length: 437
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 174

Conread position: 111-525
Cow position:
Alignm length: 423
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 94

Conread position: 120-270
Cow position:
Alignm length: 157
Alignm identity: 126
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 31, 49

Conread position: 120-522
Cow position:
Alignm length: 425
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 28

Conread position: 120-525
Cow position:
Alignm length: 416
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 49

Conread position: 120-525
Cow position:
Alignm length: 415
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 55

Conread position: 122-425
Cow position:
Alignm length: 309
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 116

Conread position: 122-523
Cow position:
Alignm length: 413
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 21

Conread position: 152-391
Cow position:
Alignm length: 240
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 0

Conread position: 152-481
Cow position:
Alignm length: 333
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 11

Conread position: 152-525
Cow position:
Alignm length: 378
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 17

Conread position: 152-525
Cow position:
Alignm length: 378
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 11

Conread position: 152-525
Cow position:
Alignm length: 378
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 11

Conread position: 163-506
Cow position:
Alignm length: 349
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 99

Conread position: 163-525
Cow position:
Alignm length: 367
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 111

Conread position: 163-525
Cow position:
Alignm length: 367
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 261, 105

Conread position: 163-525
Cow position:
Alignm length: 363
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 165-525
Cow position:
Alignm length: 365
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 103

Conread position: 173-525
Cow position:
Alignm length: 357
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 95

Conread position: 186-538
Cow position:
Alignm length: 358
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 15

Conread position: 205-383
Cow position:
Alignm length: 180
Alignm identity: 144
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 37, 64

Conread position: 220-525
Cow position:
Alignm length: 310
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 57

Conread position: 233-522
Cow position:
Alignm length: 294
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 36

Conread position: 238-440
Cow position:
Alignm length: 204
Alignm identity: 153
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 52, 31

Conread position: 243-525
Cow position:
Alignm length: 286
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 128

Conread position: 247-525
Cow position:
Alignm length: 287
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 130

Conread position: 263-525
Cow position:
Alignm length: 272
Alignm identity: 199
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 159, 51

Conread position: 266-525
Cow position:
Alignm length: 267
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 85

Conread position: 282-525
Cow position:
Alignm length: 248
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 91

Show alignments to all cow chromosomes.