Cow genome map

Conread name: rcki31_m16.y1

Conread position: 1-239
Cow position:
Alignm length: 253
Alignm identity: 191
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 28, 48

Conread position: 1-240
Cow position:
Alignm length: 249
Alignm identity: 174
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 72, 171

Conread position: 1-258
Cow position:
Alignm length: 274
Alignm identity: 199
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 74, 225

Conread position: 1-324
Cow position:
Alignm length: 342
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 273

Conread position: 1-327
Cow position:
Alignm length: 331
Alignm identity: 224
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 74, 113

Conread position: 1-330
Cow position:
Alignm length: 347
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 249

Conread position: 1-412
Cow position:
Alignm length: 429
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 18

Conread position: 1-422
Cow position:
Alignm length: 443
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 183

Conread position: 1-443
Cow position:
Alignm length: 465
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 179

Conread position: 1-461
Cow position:
Alignm length: 485
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 19

Conread position: 1-481
Cow position:
Alignm length: 499
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 176

Conread position: 1-508
Cow position:
Alignm length: 520
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 205

Conread position: 1-517
Cow position:
Alignm length: 530
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 76

Conread position: 1-522
Cow position:
Alignm length: 537
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 45

Conread position: 1-523
Cow position:
Alignm length: 540
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 54

Conread position: 1-524
Cow position:
Alignm length: 546
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 285

Conread position: 1-525
Cow position:
Alignm length: 547
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 279

Conread position: 1-525
Cow position:
Alignm length: 548
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 155

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-525
Cow position:
Alignm length: 541
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 162

Conread position: 1-525
Cow position:
Alignm length: 553
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 44

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 284

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-525
Cow position:
Alignm length: 547
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 20

Conread position: 1-525
Cow position:
Alignm length: 545
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 13

Conread position: 1-525
Cow position:
Alignm length: 547
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 25

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 179

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 60

Conread position: 1-525
Cow position:
Alignm length: 547
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 180

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 179

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 55

Conread position: 1-529
Cow position:
Alignm length: 553
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 286

Conread position: 1-556
Cow position:
Alignm length: 584
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 223

Conread position: 2-525
Cow position:
Alignm length: 545
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 17

Conread position: 3-149
Cow position:
Alignm length: 156
Alignm identity: 125
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 91, 73

Conread position: 3-352
Cow position:
Alignm length: 369
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 178

Conread position: 3-367
Cow position:
Alignm length: 382
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 46

Conread position: 5-525
Cow position:
Alignm length: 541
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 279

Conread position: 5-529
Cow position:
Alignm length: 541
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 153

Conread position: 5-530
Cow position:
Alignm length: 551
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 234

Conread position: 6-149
Cow position:
Alignm length: 154
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 69, 0

Conread position: 6-260
Cow position:
Alignm length: 263
Alignm identity: 195
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 69, 57

Conread position: 6-332
Cow position:
Alignm length: 344
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 14

Conread position: 6-338
Cow position:
Alignm length: 353
Alignm identity: 251
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 67, 45

Conread position: 6-353
Cow position:
Alignm length: 365
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-402
Cow position:
Alignm length: 414
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 38

Conread position: 6-405
Cow position:
Alignm length: 414
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 276

Conread position: 6-425
Cow position:
Alignm length: 437
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-445
Cow position:
Alignm length: 461
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 174

Conread position: 6-458
Cow position:
Alignm length: 482
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 34

Conread position: 6-467
Cow position:
Alignm length: 488
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 43

Conread position: 6-499
Cow position:
Alignm length: 516
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 242

Conread position: 6-514
Cow position:
Alignm length: 522
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 45

Conread position: 6-516
Cow position:
Alignm length: 533
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 280

Conread position: 6-521
Cow position:
Alignm length: 543
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 20

Conread position: 6-522
Cow position:
Alignm length: 539
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 279

Conread position: 6-524
Cow position:
Alignm length: 540
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 279

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 542
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 281

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 43

Conread position: 6-525
Cow position:
Alignm length: 544
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 282

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 198

Conread position: 6-525
Cow position:
Alignm length: 540
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 278

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 542
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 280

Conread position: 6-525
Cow position:
Alignm length: 537
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 274

Conread position: 6-525
Cow position:
Alignm length: 555
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 279

Conread position: 6-525
Cow position:
Alignm length: 548
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 286

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 272

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 534
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 85

Conread position: 6-529
Cow position:
Alignm length: 546
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 278

Conread position: 6-529
Cow position:
Alignm length: 541
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 170

Conread position: 6-530
Cow position:
Alignm length: 546
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 7-484
Cow position:
Alignm length: 488
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 105

Conread position: 7-522
Cow position:
Alignm length: 540
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 280

Conread position: 7-525
Cow position:
Alignm length: 542
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 181

Conread position: 7-525
Cow position:
Alignm length: 535
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 188

Conread position: 7-525
Cow position:
Alignm length: 544
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 107

Conread position: 7-525
Cow position:
Alignm length: 528
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 100

Conread position: 7-525
Cow position:
Alignm length: 532
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 69

Conread position: 7-529
Cow position:
Alignm length: 545
Alignm identity: 347
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 66, 90

Conread position: 8-578
Cow position:
Alignm length: 582
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 100

Conread position: 9-190
Cow position:
Alignm length: 199
Alignm identity: 150
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 66, 0

Conread position: 9-504
Cow position:
Alignm length: 514
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 31

Conread position: 10-393
Cow position:
Alignm length: 404
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 261

Conread position: 17-524
Cow position:
Alignm length: 521
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 59

Conread position: 27-525
Cow position:
Alignm length: 518
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 114

Conread position: 27-525
Cow position:
Alignm length: 518
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 148

Conread position: 45-525
Cow position:
Alignm length: 502
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 234

Conread position: 47-525
Cow position:
Alignm length: 505
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 134

Conread position: 54-495
Cow position:
Alignm length: 469
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 192

Conread position: 54-525
Cow position:
Alignm length: 481
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 39

Conread position: 58-525
Cow position:
Alignm length: 490
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 227

Conread position: 71-481
Cow position:
Alignm length: 416
Alignm identity: 282
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 236, 75

Conread position: 73-525
Cow position:
Alignm length: 475
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 7

Conread position: 78-525
Cow position:
Alignm length: 461
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 197

Conread position: 82-302
Cow position:
Alignm length: 227
Alignm identity: 175
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 70, 13

Conread position: 92-525
Cow position:
Alignm length: 445
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 184

Conread position: 95-525
Cow position:
Alignm length: 446
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 113

Conread position: 95-529
Cow position:
Alignm length: 458
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 180

Conread position: 96-525
Cow position:
Alignm length: 437
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 74

Conread position: 98-525
Cow position:
Alignm length: 438
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 17

Conread position: 120-323
Cow position:
Alignm length: 209
Alignm identity: 166
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 23, 48

Conread position: 120-525
Cow position:
Alignm length: 418
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 135

Conread position: 122-516
Cow position:
Alignm length: 405
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 51

Conread position: 142-525
Cow position:
Alignm length: 390
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 34

Conread position: 151-371
Cow position:
Alignm length: 226
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 12

Conread position: 152-525
Cow position:
Alignm length: 381
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 11

Conread position: 156-356
Cow position:
Alignm length: 220
Alignm identity: 162
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 36, 7

Conread position: 163-525
Cow position:
Alignm length: 367
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 78

Conread position: 182-414
Cow position:
Alignm length: 235
Alignm identity: 141
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 12, 57

Conread position: 189-523
Cow position:
Alignm length: 341
Alignm identity: 234
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 5, 89

Conread position: 201-405
Cow position:
Alignm length: 206
Alignm identity: 168
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 196, 67

Conread position: 209-500
Cow position:
Alignm length: 301
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 50

Conread position: 211-365
Cow position:
Alignm length: 156
Alignm identity: 136
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 10, 59

Conread position: 223-525
Cow position:
Alignm length: 308
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 45

Conread position: 247-493
Cow position:
Alignm length: 248
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 127

Conread position: 290-525
Cow position:
Alignm length: 240
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 32

Conread position: 291-529
Cow position:
Alignm length: 246
Alignm identity: 177
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 77, 73

Show alignments to all cow chromosomes.