Cow genome map

Conread name: rcki31_m16.y1

Conread position: 1-227
Cow position: chr17:2534357-2534125 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 74, 199

Conread position: 1-362
Cow position: chr17:7615240-7615613 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 267
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 70, 43

Conread position: 1-366
Cow position: chr17:21716913-21716532 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-387
Cow position: chr17:36284718-36284319 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-422
Cow position: chr17:4676858-4676444 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 264
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 73, 48

Conread position: 1-425
Cow position: chr17:18123226-18123657 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 24

Conread position: 1-440
Cow position: chr17:29471881-29471434 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 183

Conread position: 1-486
Cow position: chr17:16904030-16903534 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-490
Cow position: chr17:2177421-2176925 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 171

Conread position: 1-522
Cow position: chr17:14249658-14250200 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 70

Conread position: 1-522
Cow position: chr17:17221759-17221229 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 279

Conread position: 1-525
Cow position: chr17:184598-184057 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 180

Conread position: 1-525
Cow position: chr17:1456929-1457473 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 55

Conread position: 1-525
Cow position: chr17:4211383-4210839 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 183

Conread position: 1-525
Cow position: chr17:5638441-5638979 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 275

Conread position: 1-525
Cow position: chr17:5672069-5672607 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 275

Conread position: 1-525
Cow position: chr17:6071990-6071445 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 283

Conread position: 1-525
Cow position: chr17:15854184-15853640 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 282

Conread position: 1-525
Cow position: chr17:16447030-16447568 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 285

Conread position: 1-525
Cow position: chr17:20093714-20094246 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 224

Conread position: 1-525
Cow position: chr17:23320969-23321510 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 285

Conread position: 1-529
Cow position: chr17:43471140-43471684 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 2-389
Cow position: chr17:2201747-2201347 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 283

Conread position: 2-523
Cow position: chr17:1883690-1883171 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 16

Conread position: 5-202
Cow position: chr17:28539437-28539240 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 145
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 142, 28

Conread position: 6-148
Cow position: chr17:38617084-38616930 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 69, 0

Conread position: 6-266
Cow position: chr17:23884364-23884627 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 190
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 16, 33

Conread position: 6-293
Cow position: chr17:25551263-25551551 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 166

Conread position: 6-483
Cow position: chr17:4635345-4635823 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 9

Conread position: 6-522
Cow position: chr17:2839458-2838945 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 39

Conread position: 6-525
Cow position: chr17:4063777-4063250 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 52

Conread position: 6-525
Cow position: chr17:6263300-6262766 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 213

Conread position: 6-525
Cow position: chr17:8223152-8222615 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 280

Conread position: 6-525
Cow position: chr17:14243278-14242740 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 285

Conread position: 6-525
Cow position: chr17:16869852-16870357 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 9

Conread position: 6-525
Cow position: chr17:24026540-24027073 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 13

Conread position: 6-525
Cow position: chr17:40811162-40810661 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 419, 70

Conread position: 7-349
Cow position: chr17:36747077-36747434 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 24

Conread position: 7-525
Cow position: chr17:148353-147831 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 187

Conread position: 7-525
Cow position: chr17:16118026-16118543 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 91

Conread position: 7-525
Cow position: chr17:29079791-29079291 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 24

Conread position: 9-238
Cow position: chr17:12631432-12631666 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 157
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 66, 99

Conread position: 9-365
Cow position: chr17:38829321-38828954 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 22

Conread position: 13-515
Cow position: chr17:15374821-15374328 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 22

Conread position: 13-529
Cow position: chr17:22563584-22563051 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 272

Conread position: 14-522
Cow position: chr17:241724-241207 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 158

Conread position: 22-496
Cow position: chr17:11083705-11084196 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 263

Conread position: 22-523
Cow position: chr17:20033836-20033351 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 26

Conread position: 29-276
Cow position: chr17:42258293-42258038 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 195
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 44, 76

Conread position: 29-448
Cow position: chr17:1672720-1672287 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 255

Conread position: 76-450
Cow position: chr17:2583760-2583377 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 135

Conread position: 80-525
Cow position: chr17:18198718-18198264 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 93

Conread position: 80-525
Cow position: chr17:21767254-21766807 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 159

Conread position: 82-507
Cow position: chr17:31233032-31232607 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 29

Conread position: 87-309
Cow position: chr17:42313241-42313011 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 180
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 37, 86

Conread position: 87-522
Cow position: chr17:4085422-4084981 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 84

Conread position: 102-549
Cow position: chr17:1311421-1311874 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 158

Conread position: 120-313
Cow position: chr17:12290166-12290364 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 159
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 34, 49

Conread position: 120-525
Cow position: chr17:138922-138523 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 101

Conread position: 120-525
Cow position: chr17:29950532-29950125 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 153

Conread position: 151-320
Cow position: chr17:24876721-24876882 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 136
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 144, 12

Conread position: 153-445
Cow position: chr17:11337888-11338159 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 218
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 272, 16

Conread position: 160-413
Cow position: chr17:4570487-4570239 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 190
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 190, 92

Conread position: 163-317
Cow position: chr17:18421657-18421504 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 128
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 105, 0

Conread position: 165-523
Cow position: chr17:15351310-15350962 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 69

Conread position: 189-320
Cow position: chr17:37699465-37699589 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 63, 0

Conread position: 195-405
Cow position: chr17:42247624-42247816 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 161
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 57, 0

Conread position: 268-524
Cow position: chr17:16464246-16463994 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 13

Show alignments to all cow chromosomes.