Cow genome map
| Conread name: | rcki31_m16.y1 |
| Conread position: | 1-258 |
| Cow position: | chr18:8884775-8884516 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 150, 168 |
| Conread position: | 1-305 |
| Cow position: | chr18:7359091-7358775 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 178 |
| Conread position: | 1-306 |
| Cow position: | chr18:29059143-29059467 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 243 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 43, 55 |
| Conread position: | 1-339 |
| Cow position: | chr18:20151264-20150929 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 55 |
| Conread position: | 1-367 |
| Cow position: | chr18:45979039-45978674 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 48 |
| Conread position: | 1-425 |
| Cow position: | chr18:4949834-4949380 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 270 |
| Conread position: | 1-425 |
| Cow position: | chr18:16857459-16857025 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 285 |
| Conread position: | 1-438 |
| Cow position: | chr18:10221016-10221464 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 174 |
| Conread position: | 1-457 |
| Cow position: | chr18:42242667-42243149 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 42 |
| Conread position: | 1-525 |
| Cow position: | chr18:10896845-10896336 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 111 |
| Conread position: | 1-525 |
| Cow position: | chr18:23659217-23659762 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 281 |
| Conread position: | 1-525 |
| Cow position: | chr18:23701129-23701665 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 273 |
| Conread position: | 1-525 |
| Cow position: | chr18:33272286-33271771 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 30 |
| Conread position: | 1-535 |
| Cow position: | chr18:35057685-35057148 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 41 |
| Conread position: | 2-525 |
| Cow position: | chr18:6733297-6733829 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 71 |
| Conread position: | 2-525 |
| Cow position: | chr18:54065402-54065933 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 153 |
| Conread position: | 3-522 |
| Cow position: | chr18:16172944-16173476 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 46 |
| Conread position: | 3-525 |
| Cow position: | chr18:14127615-14128151 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 281 |
| Conread position: | 3-525 |
| Cow position: | chr18:29862936-29863471 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 278 |
| Conread position: | 5-376 |
| Cow position: | chr18:37692615-37693004 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 176 |
| Conread position: | 5-525 |
| Cow position: | chr18:17335071-17335602 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 176 |
| Conread position: | 6-192 |
| Cow position: | chr18:51713394-51713597 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 6-322 |
| Cow position: | chr18:36224103-36223780 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 175 |
| Conread position: | 6-349 |
| Cow position: | chr18:7050254-7049895 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 279 |
| Conread position: | 6-420 |
| Cow position: | chr18:4978201-4978615 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 43 |
| Conread position: | 6-424 |
| Cow position: | chr18:39002469-39002872 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 49 |
| Conread position: | 6-424 |
| Cow position: | chr18:41837421-41837852 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 279 |
| Conread position: | 6-429 |
| Cow position: | chr18:17944179-17943746 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 277 |
| Conread position: | 6-494 |
| Cow position: | chr18:43430667-43430171 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 43 |
| Conread position: | 6-501 |
| Cow position: | chr18:16094550-16094042 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 275 |
| Conread position: | 6-516 |
| Cow position: | chr18:28968620-28969147 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 279 |
| Conread position: | 6-522 |
| Cow position: | chr18:42080351-42080889 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 9 |
| Conread position: | 6-524 |
| Cow position: | chr18:89797-89305 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 13 |
| Conread position: | 6-524 |
| Cow position: | chr18:1144881-1145408 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 280 |
| Conread position: | 6-524 |
| Cow position: | chr18:8965961-8965450 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 176 |
| Conread position: | 6-524 |
| Cow position: | chr18:23802689-23802157 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 276 |
| Conread position: | 6-524 |
| Cow position: | chr18:36122189-36122705 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 283 |
| Conread position: | 6-525 |
| Cow position: | chr18:14419646-14419111 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 279 |
| Conread position: | 6-525 |
| Cow position: | chr18:25355184-25354651 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 20 |
| Conread position: | 6-525 |
| Cow position: | chr18:36512296-36511767 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 272 |
| Conread position: | 7-399 |
| Cow position: | chr18:48240966-48240615 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 349, 79 |
| Conread position: | 7-411 |
| Cow position: | chr18:33498305-33498719 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 265 |
| Conread position: | 7-425 |
| Cow position: | chr18:52457868-52458297 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 300 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 82, 42 |
| Conread position: | 7-442 |
| Cow position: | chr18:16045675-16046108 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 80 |
| Conread position: | 7-445 |
| Cow position: | chr18:33501316-33501770 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 33 |
| Conread position: | 7-508 |
| Cow position: | chr18:41238194-41237693 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 63 |
| Conread position: | 7-525 |
| Cow position: | chr18:5536639-5536106 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 37 |
| Conread position: | 7-525 |
| Cow position: | chr18:30876606-30877137 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 202 |
| Conread position: | 7-525 |
| Cow position: | chr18:38157878-38158409 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 69 |
| Conread position: | 7-535 |
| Cow position: | chr18:33607900-33607361 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 37 |
| Conread position: | 7-537 |
| Cow position: | chr18:17324043-17323509 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 174 |
| Conread position: | 8-525 |
| Cow position: | chr18:27990424-27989890 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 277 |
| Conread position: | 9-333 |
| Cow position: | chr18:52698292-52697957 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 66, 176 |
| Conread position: | 12-324 |
| Cow position: | chr18:29240981-29240656 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 168 |
| Conread position: | 12-445 |
| Cow position: | chr18:55137483-55137928 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 221 |
| Conread position: | 18-537 |
| Cow position: | chr18:15172493-15171979 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 26 |
| Conread position: | 26-515 |
| Cow position: | chr18:21797738-21797247 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 63 |
| Conread position: | 27-285 |
| Cow position: | chr18:42466704-42466970 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 145 |
| Conread position: | 37-525 |
| Cow position: | chr18:43284681-43285173 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 122 |
| Conread position: | 38-430 |
| Cow position: | chr18:36770903-36771300 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 89 |
| Conread position: | 47-525 |
| Cow position: | chr18:13508443-13508919 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 225 |
| Conread position: | 72-259 |
| Cow position: | chr18:21199508-21199705 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 80-425 |
| Cow position: | chr18:26335577-26335911 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 100 |
| Conread position: | 88-445 |
| Cow position: | chr18:52462497-52462859 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 256 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 95-411 |
| Cow position: | chr18:33851101-33850780 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 78 |
| Conread position: | 95-539 |
| Cow position: | chr18:28084619-28084165 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 78 |
| Conread position: | 96-525 |
| Cow position: | chr18:35293685-35293254 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 8 |
| Conread position: | 97-521 |
| Cow position: | chr18:29031090-29031524 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 299 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 26, 73 |
| Conread position: | 120-525 |
| Cow position: | chr18:33522761-33522360 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 122-357 |
| Cow position: | chr18:51464954-51465196 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 33, 166 |
| Conread position: | 122-514 |
| Cow position: | chr18:12201000-12201379 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 75 |
| Conread position: | 181-448 |
| Cow position: | chr18:52479529-52479271 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 248, 91 |
| Conread position: | 183-356 |
| Cow position: | chr18:27834351-27834525 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 26, 87 |
| Conread position: | 212-536 |
| Cow position: | chr18:6881796-6882132 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 12 |
| Conread position: | 251-425 |
| Cow position: | chr18:48500906-48500748 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 276-514 |
| Cow position: | chr18:42467181-42467411 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 78 |
Show alignments to all cow chromosomes.