Cow genome map

Conread name: rcki31_m16.y1

Conread position: 1-206
Cow position:
Alignm length: 220
Alignm identity: 162
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 77, 199

Conread position: 1-240
Cow position:
Alignm length: 246
Alignm identity: 167
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 119, 74

Conread position: 1-291
Cow position:
Alignm length: 296
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 154

Conread position: 1-302
Cow position:
Alignm length: 317
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 30

Conread position: 1-309
Cow position:
Alignm length: 332
Alignm identity: 234
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 50, 190

Conread position: 1-324
Cow position:
Alignm length: 341
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 284

Conread position: 1-335
Cow position:
Alignm length: 350
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 67

Conread position: 1-366
Cow position:
Alignm length: 383
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 48

Conread position: 1-393
Cow position:
Alignm length: 414
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 55

Conread position: 1-405
Cow position:
Alignm length: 422
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-413
Cow position:
Alignm length: 431
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 278

Conread position: 1-425
Cow position:
Alignm length: 448
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 181

Conread position: 1-438
Cow position:
Alignm length: 459
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 285

Conread position: 1-469
Cow position:
Alignm length: 490
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-473
Cow position:
Alignm length: 492
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 19

Conread position: 1-497
Cow position:
Alignm length: 521
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 25

Conread position: 1-501
Cow position:
Alignm length: 515
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 67

Conread position: 1-504
Cow position:
Alignm length: 524
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 48

Conread position: 1-511
Cow position:
Alignm length: 532
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-523
Cow position:
Alignm length: 542
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 232

Conread position: 1-523
Cow position:
Alignm length: 542
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 175

Conread position: 1-523
Cow position:
Alignm length: 539
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 75

Conread position: 1-524
Cow position:
Alignm length: 536
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 48

Conread position: 1-524
Cow position:
Alignm length: 542
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 44

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-525
Cow position:
Alignm length: 544
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 48

Conread position: 1-525
Cow position:
Alignm length: 549
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 18

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 24

Conread position: 1-525
Cow position:
Alignm length: 544
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 282

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 229

Conread position: 1-525
Cow position:
Alignm length: 547
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-525
Cow position:
Alignm length: 539
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 119

Conread position: 1-525
Cow position:
Alignm length: 543
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 181

Conread position: 1-525
Cow position:
Alignm length: 553
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 21

Conread position: 1-525
Cow position:
Alignm length: 545
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 251

Conread position: 1-525
Cow position:
Alignm length: 554
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 197

Conread position: 1-525
Cow position:
Alignm length: 547
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 246

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-525
Cow position:
Alignm length: 532
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 86

Conread position: 1-525
Cow position:
Alignm length: 540
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 55

Conread position: 1-525
Cow position:
Alignm length: 541
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 279

Conread position: 1-532
Cow position:
Alignm length: 550
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 64

Conread position: 1-538
Cow position:
Alignm length: 559
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-549
Cow position:
Alignm length: 560
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 50

Conread position: 2-515
Cow position:
Alignm length: 535
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 283

Conread position: 2-525
Cow position:
Alignm length: 542
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 279

Conread position: 2-525
Cow position:
Alignm length: 542
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 280

Conread position: 3-523
Cow position:
Alignm length: 553
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 198

Conread position: 3-525
Cow position:
Alignm length: 543
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 281

Conread position: 4-411
Cow position:
Alignm length: 426
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 281

Conread position: 5-302
Cow position:
Alignm length: 309
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 263

Conread position: 5-491
Cow position:
Alignm length: 510
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 21

Conread position: 5-525
Cow position:
Alignm length: 544
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 14

Conread position: 5-529
Cow position:
Alignm length: 539
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 140

Conread position: 5-544
Cow position:
Alignm length: 561
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 278

Conread position: 6-273
Cow position:
Alignm length: 293
Alignm identity: 212
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 69, 0

Conread position: 6-309
Cow position:
Alignm length: 321
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 143

Conread position: 6-316
Cow position:
Alignm length: 320
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 107

Conread position: 6-317
Cow position:
Alignm length: 325
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 151

Conread position: 6-427
Cow position:
Alignm length: 447
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 180

Conread position: 6-465
Cow position:
Alignm length: 477
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 38

Conread position: 6-491
Cow position:
Alignm length: 511
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 244

Conread position: 6-507
Cow position:
Alignm length: 522
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 279

Conread position: 6-511
Cow position:
Alignm length: 527
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 34

Conread position: 6-512
Cow position:
Alignm length: 529
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 181

Conread position: 6-516
Cow position:
Alignm length: 517
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 13

Conread position: 6-524
Cow position:
Alignm length: 542
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 38

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 279

Conread position: 6-525
Cow position:
Alignm length: 534
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 64

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 542
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 194

Conread position: 6-525
Cow position:
Alignm length: 542
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 273

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 149

Conread position: 6-529
Cow position:
Alignm length: 541
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 222

Conread position: 6-529
Cow position:
Alignm length: 542
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 19

Conread position: 6-530
Cow position:
Alignm length: 540
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 277

Conread position: 6-549
Cow position:
Alignm length: 564
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 172

Conread position: 7-425
Cow position:
Alignm length: 438
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 44

Conread position: 7-446
Cow position:
Alignm length: 457
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 49

Conread position: 7-524
Cow position:
Alignm length: 523
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 13

Conread position: 7-537
Cow position:
Alignm length: 555
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 279

Conread position: 7-537
Cow position:
Alignm length: 553
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 110

Conread position: 7-539
Cow position:
Alignm length: 547
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 52

Conread position: 7-549
Cow position:
Alignm length: 556
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 91

Conread position: 9-310
Cow position:
Alignm length: 318
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 36

Conread position: 9-525
Cow position:
Alignm length: 548
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 123

Conread position: 12-190
Cow position:
Alignm length: 199
Alignm identity: 145
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 63, 0

Conread position: 13-525
Cow position:
Alignm length: 534
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 12

Conread position: 13-525
Cow position:
Alignm length: 535
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 272

Conread position: 14-516
Cow position:
Alignm length: 528
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 17

Conread position: 15-336
Cow position:
Alignm length: 343
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 268

Conread position: 16-350
Cow position:
Alignm length: 355
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 163

Conread position: 27-500
Cow position:
Alignm length: 506
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 41

Conread position: 42-525
Cow position:
Alignm length: 504
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 242

Conread position: 42-525
Cow position:
Alignm length: 512
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 207

Conread position: 44-523
Cow position:
Alignm length: 499
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 138

Conread position: 45-313
Cow position:
Alignm length: 284
Alignm identity: 213
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 31, 142

Conread position: 45-313
Cow position:
Alignm length: 284
Alignm identity: 213
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 31, 142

Conread position: 46-395
Cow position:
Alignm length: 364
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 236

Conread position: 47-525
Cow position:
Alignm length: 502
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 135

Conread position: 51-381
Cow position:
Alignm length: 342
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 19

Conread position: 56-486
Cow position:
Alignm length: 452
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 229

Conread position: 65-523
Cow position:
Alignm length: 478
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 11

Conread position: 71-330
Cow position:
Alignm length: 272
Alignm identity: 206
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 16, 143

Conread position: 76-525
Cow position:
Alignm length: 467
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 199

Conread position: 80-472
Cow position:
Alignm length: 407
Alignm identity: 276
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 40, 93

Conread position: 92-523
Cow position:
Alignm length: 450
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 185

Conread position: 95-355
Cow position:
Alignm length: 276
Alignm identity: 207
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 29, 84

Conread position: 95-516
Cow position:
Alignm length: 443
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 127

Conread position: 96-436
Cow position:
Alignm length: 352
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 78

Conread position: 102-425
Cow position:
Alignm length: 334
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 71

Conread position: 110-525
Cow position:
Alignm length: 425
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 158

Conread position: 120-459
Cow position:
Alignm length: 346
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 31

Conread position: 120-494
Cow position:
Alignm length: 388
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 153

Conread position: 120-524
Cow position:
Alignm length: 414
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 258

Conread position: 120-525
Cow position:
Alignm length: 416
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 49

Conread position: 120-529
Cow position:
Alignm length: 414
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 28

Conread position: 120-550
Cow position:
Alignm length: 437
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 138

Conread position: 126-522
Cow position:
Alignm length: 413
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 75

Conread position: 152-387
Cow position:
Alignm length: 236
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 0

Conread position: 156-348
Cow position:
Alignm length: 193
Alignm identity: 150
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 45, 0

Conread position: 163-406
Cow position:
Alignm length: 245
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 105

Conread position: 177-525
Cow position:
Alignm length: 354
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 91

Conread position: 183-527
Cow position:
Alignm length: 357
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 85

Conread position: 189-549
Cow position:
Alignm length: 367
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 8

Conread position: 194-515
Cow position:
Alignm length: 326
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 74

Conread position: 195-506
Cow position:
Alignm length: 316
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 52

Conread position: 209-485
Cow position:
Alignm length: 281
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 32

Conread position: 210-525
Cow position:
Alignm length: 320
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 20

Conread position: 213-525
Cow position:
Alignm length: 317
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 55

Conread position: 232-511
Cow position:
Alignm length: 284
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 109

Conread position: 242-538
Cow position:
Alignm length: 303
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 25

Conread position: 245-524
Cow position:
Alignm length: 286
Alignm identity: 197
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 7, 47

Conread position: 249-525
Cow position:
Alignm length: 281
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 19

Conread position: 250-411
Cow position:
Alignm length: 162
Alignm identity: 134
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 123, 0

Conread position: 253-541
Cow position:
Alignm length: 294
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 15

Conread position: 263-525
Cow position:
Alignm length: 271
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 113

Conread position: 264-525
Cow position:
Alignm length: 266
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 109

Conread position: 264-525
Cow position:
Alignm length: 265
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 110

Conread position: 276-525
Cow position:
Alignm length: 256
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 96

Conread position: 279-425
Cow position:
Alignm length: 147
Alignm identity: 114
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 97, 0

Conread position: 282-530
Cow position:
Alignm length: 253
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 91

Show alignments to all cow chromosomes.