Cow genome map
| Conread name: | rcki31_m16.y1 |
| Conread position: | 1-325 |
| Cow position: | chr20:35036737-35037075 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 284 |
| Conread position: | 1-329 |
| Cow position: | chr20:19146270-19145931 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 248 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 74, 50 |
| Conread position: | 1-359 |
| Cow position: | chr20:35145414-35145074 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 254 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 74, 113 |
| Conread position: | 1-401 |
| Cow position: | chr20:29314492-29314084 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 63, 77 |
| Conread position: | 1-406 |
| Cow position: | chr20:6055080-6055499 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 279 |
| Conread position: | 1-425 |
| Cow position: | chr20:7994897-7995337 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 287 |
| Conread position: | 1-523 |
| Cow position: | chr20:12567677-12568212 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 214 |
| Conread position: | 1-523 |
| Cow position: | chr20:29806284-29806835 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 187 |
| Conread position: | 1-524 |
| Cow position: | chr20:28443706-28444245 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 186 |
| Conread position: | 1-524 |
| Cow position: | chr20:30479752-30479212 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 284 |
| Conread position: | 1-525 |
| Cow position: | chr20:5538787-5538284 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 131 |
| Conread position: | 1-525 |
| Cow position: | chr20:7597219-7597755 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 166 |
| Conread position: | 1-525 |
| Cow position: | chr20:12434757-12435296 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 284 |
| Conread position: | 1-525 |
| Cow position: | chr20:14210734-14211276 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 242 |
| Conread position: | 1-525 |
| Cow position: | chr20:17657590-17658130 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 25 |
| Conread position: | 1-525 |
| Cow position: | chr20:22209264-22208724 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 284 |
| Conread position: | 1-525 |
| Cow position: | chr20:24399223-24399763 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 179 |
| Conread position: | 1-525 |
| Cow position: | chr20:28294959-28294414 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 177 |
| Conread position: | 1-525 |
| Cow position: | chr20:29370777-29371316 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 280 |
| Conread position: | 1-529 |
| Cow position: | chr20:10686365-10685837 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 103 |
| Conread position: | 1-538 |
| Cow position: | chr20:9536539-9535995 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 181 |
| Conread position: | 1-578 |
| Cow position: | chr20:15117449-15116859 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 196 |
| Conread position: | 2-193 |
| Cow position: | chr20:26826220-26826420 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 75, 29 |
| Conread position: | 6-243 |
| Cow position: | chr20:16942006-16942255 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 93, 74 |
| Conread position: | 6-306 |
| Cow position: | chr20:35128602-35128284 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 280 |
| Conread position: | 6-371 |
| Cow position: | chr20:14326978-14327357 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 241 |
| Conread position: | 6-410 |
| Cow position: | chr20:33731383-33730978 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 167 |
| Conread position: | 6-425 |
| Cow position: | chr20:34597720-34598149 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 177 |
| Conread position: | 6-425 |
| Cow position: | chr20:37271909-37271477 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 9 |
| Conread position: | 6-499 |
| Cow position: | chr20:22221971-22222476 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 226 |
| Conread position: | 6-525 |
| Cow position: | chr20:6550360-6550896 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 279 |
| Conread position: | 6-525 |
| Cow position: | chr20:13955269-13954732 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 65 |
| Conread position: | 6-525 |
| Cow position: | chr20:15089735-15090273 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 278 |
| Conread position: | 6-525 |
| Cow position: | chr20:15295655-15295122 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 278 |
| Conread position: | 6-525 |
| Cow position: | chr20:19845399-19844879 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 42 |
| Conread position: | 6-525 |
| Cow position: | chr20:27877121-27876583 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 213 |
| Conread position: | 6-525 |
| Cow position: | chr20:30689510-30688977 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 223 |
| Conread position: | 6-537 |
| Cow position: | chr20:13653707-13654240 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 65 |
| Conread position: | 6-549 |
| Cow position: | chr20:14720721-14721295 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 172 |
| Conread position: | 7-149 |
| Cow position: | chr20:34776528-34776378 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 7-211 |
| Cow position: | chr20:10538273-10538053 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 68, 197 |
| Conread position: | 7-421 |
| Cow position: | chr20:23802787-23802360 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 278 |
| Conread position: | 7-516 |
| Cow position: | chr20:40256286-40255767 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 42 |
| Conread position: | 7-525 |
| Cow position: | chr20:18490586-18490050 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 192 |
| Conread position: | 7-538 |
| Cow position: | chr20:15527382-15526835 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 267 |
| Conread position: | 10-523 |
| Cow position: | chr20:12996610-12997164 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 168 |
| Conread position: | 12-324 |
| Cow position: | chr20:16526930-16526601 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 179 |
| Conread position: | 13-525 |
| Cow position: | chr20:14866761-14867281 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 279 |
| Conread position: | 22-525 |
| Cow position: | chr20:10921304-10921820 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 238 |
| Conread position: | 26-525 |
| Cow position: | chr20:14756639-14757168 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 30 |
| Conread position: | 70-525 |
| Cow position: | chr20:18608841-18608391 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 321 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 34, 105 |
| Conread position: | 76-525 |
| Cow position: | chr20:6239582-6240032 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 189 |
| Conread position: | 80-536 |
| Cow position: | chr20:35843880-35844339 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 94 |
| Conread position: | 95-523 |
| Cow position: | chr20:15068359-15067915 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 79 |
| Conread position: | 98-525 |
| Cow position: | chr20:7592921-7593350 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 81 |
| Conread position: | 102-338 |
| Cow position: | chr20:21338580-21338812 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 186 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 24, 52 |
| Conread position: | 105-425 |
| Cow position: | chr20:33246786-33247099 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 166 |
| Conread position: | 120-299 |
| Cow position: | chr20:6474672-6474502 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 120-525 |
| Cow position: | chr20:18092390-18092799 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 108 |
| Conread position: | 120-525 |
| Cow position: | chr20:19017900-19018302 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 49 |
| Conread position: | 152-522 |
| Cow position: | chr20:35020385-35020026 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 11 |
| Conread position: | 163-500 |
| Cow position: | chr20:34643473-34643144 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 99 |
| Conread position: | 163-525 |
| Cow position: | chr20:34968447-34968084 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 210 |
| Conread position: | 165-468 |
| Cow position: | chr20:29318680-29318411 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 243, 8 |
| Conread position: | 182-525 |
| Cow position: | chr20:33181049-33181396 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 90 |
| Conread position: | 230-525 |
| Cow position: | chr20:25845231-25845521 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 10 |
| Conread position: | 232-525 |
| Cow position: | chr20:32639406-32639111 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 36 |
| Conread position: | 233-525 |
| Cow position: | chr20:30737668-30737376 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 35 |
| Conread position: | 249-525 |
| Cow position: | chr20:23804496-23804778 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 132 |
| Conread position: | 253-463 |
| Cow position: | chr20:30816459-30816670 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 15 |
| Conread position: | 256-525 |
| Cow position: | chr20:16944869-16944616 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 135, 66 |
Show alignments to all cow chromosomes.