Cow genome map

Conread name: rcki31_m16.y1

Conread position: 1-325
Cow position:
Alignm length: 342
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-329
Cow position:
Alignm length: 347
Alignm identity: 248
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 74, 50

Conread position: 1-359
Cow position:
Alignm length: 363
Alignm identity: 254
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 74, 113

Conread position: 1-401
Cow position:
Alignm length: 415
Alignm identity: 268
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 63, 77

Conread position: 1-406
Cow position:
Alignm length: 431
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 279

Conread position: 1-425
Cow position:
Alignm length: 445
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 287

Conread position: 1-523
Cow position:
Alignm length: 544
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 214

Conread position: 1-523
Cow position:
Alignm length: 562
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 187

Conread position: 1-524
Cow position:
Alignm length: 547
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 186

Conread position: 1-524
Cow position:
Alignm length: 546
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-525
Cow position:
Alignm length: 534
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 131

Conread position: 1-525
Cow position:
Alignm length: 544
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 166

Conread position: 1-525
Cow position:
Alignm length: 547
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-525
Cow position:
Alignm length: 555
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 242

Conread position: 1-525
Cow position:
Alignm length: 548
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 25

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 179

Conread position: 1-525
Cow position:
Alignm length: 551
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 177

Conread position: 1-525
Cow position:
Alignm length: 547
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 280

Conread position: 1-529
Cow position:
Alignm length: 544
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 103

Conread position: 1-538
Cow position:
Alignm length: 559
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 181

Conread position: 1-578
Cow position:
Alignm length: 609
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 196

Conread position: 2-193
Cow position:
Alignm length: 204
Alignm identity: 146
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 75, 29

Conread position: 6-243
Cow position:
Alignm length: 252
Alignm identity: 189
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 93, 74

Conread position: 6-306
Cow position:
Alignm length: 320
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 280

Conread position: 6-371
Cow position:
Alignm length: 383
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 241

Conread position: 6-410
Cow position:
Alignm length: 415
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 167

Conread position: 6-425
Cow position:
Alignm length: 440
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 177

Conread position: 6-425
Cow position:
Alignm length: 442
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 9

Conread position: 6-499
Cow position:
Alignm length: 512
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 226

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 551
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 65

Conread position: 6-525
Cow position:
Alignm length: 543
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 278

Conread position: 6-525
Cow position:
Alignm length: 540
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 278

Conread position: 6-525
Cow position:
Alignm length: 533
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 42

Conread position: 6-525
Cow position:
Alignm length: 542
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 213

Conread position: 6-525
Cow position:
Alignm length: 542
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 223

Conread position: 6-537
Cow position:
Alignm length: 550
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 65

Conread position: 6-549
Cow position:
Alignm length: 584
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 172

Conread position: 7-149
Cow position:
Alignm length: 151
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 69, 0

Conread position: 7-211
Cow position:
Alignm length: 223
Alignm identity: 162
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 68, 197

Conread position: 7-421
Cow position:
Alignm length: 432
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 278

Conread position: 7-516
Cow position:
Alignm length: 530
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 42

Conread position: 7-525
Cow position:
Alignm length: 550
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 192

Conread position: 7-538
Cow position:
Alignm length: 553
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 267

Conread position: 10-523
Cow position:
Alignm length: 561
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 168

Conread position: 12-324
Cow position:
Alignm length: 332
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 179

Conread position: 13-525
Cow position:
Alignm length: 530
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 279

Conread position: 22-525
Cow position:
Alignm length: 524
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 238

Conread position: 26-525
Cow position:
Alignm length: 532
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 30

Conread position: 70-525
Cow position:
Alignm length: 472
Alignm identity: 321
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 34, 105

Conread position: 76-525
Cow position:
Alignm length: 462
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 189

Conread position: 80-536
Cow position:
Alignm length: 471
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 94

Conread position: 95-523
Cow position:
Alignm length: 452
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 79

Conread position: 98-525
Cow position:
Alignm length: 443
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 81

Conread position: 102-338
Cow position:
Alignm length: 241
Alignm identity: 186
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 24, 52

Conread position: 105-425
Cow position:
Alignm length: 324
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 166

Conread position: 120-299
Cow position:
Alignm length: 180
Alignm identity: 146
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 30, 0

Conread position: 120-525
Cow position:
Alignm length: 415
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 108

Conread position: 120-525
Cow position:
Alignm length: 416
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 49

Conread position: 152-522
Cow position:
Alignm length: 376
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 11

Conread position: 163-500
Cow position:
Alignm length: 342
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 99

Conread position: 163-525
Cow position:
Alignm length: 367
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 210

Conread position: 165-468
Cow position:
Alignm length: 307
Alignm identity: 226
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 243, 8

Conread position: 182-525
Cow position:
Alignm length: 352
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 90

Conread position: 230-525
Cow position:
Alignm length: 300
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 10

Conread position: 232-525
Cow position:
Alignm length: 300
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 36

Conread position: 233-525
Cow position:
Alignm length: 297
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 35

Conread position: 249-525
Cow position:
Alignm length: 286
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 132

Conread position: 253-463
Cow position:
Alignm length: 216
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 15

Conread position: 256-525
Cow position:
Alignm length: 275
Alignm identity: 214
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 135, 66

Show alignments to all cow chromosomes.