Cow genome map

Conread name: rcki31_m16.y1

Conread position: 1-221
Cow position: chr21:48108421-48108667 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 175
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 40, 189

Conread position: 1-285
Cow position: chr21:26829803-26830110 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 229
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 73, 281

Conread position: 1-288
Cow position: chr21:17207916-17207628 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 111

Conread position: 1-329
Cow position: chr21:13090049-13090372 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 43

Conread position: 1-350
Cow position: chr21:36892479-36892844 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-363
Cow position: chr21:18786761-18787134 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 179

Conread position: 1-369
Cow position: chr21:9010352-9010739 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 182

Conread position: 1-395
Cow position: chr21:28477048-28476648 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 187

Conread position: 1-423
Cow position: chr21:16278151-16277723 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 71

Conread position: 1-443
Cow position: chr21:8071343-8071802 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 281

Conread position: 1-445
Cow position: chr21:20910678-20911133 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 311
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 73, 227

Conread position: 1-462
Cow position: chr21:20243850-20244325 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 48

Conread position: 1-484
Cow position: chr21:33964979-33965466 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 25

Conread position: 1-490
Cow position: chr21:13302948-13302443 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 180

Conread position: 1-515
Cow position: chr21:31252751-31252212 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 191

Conread position: 1-521
Cow position: chr21:4559320-4559852 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 181

Conread position: 1-522
Cow position: chr21:23801689-23802216 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 112

Conread position: 1-525
Cow position: chr21:2537416-2537935 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 155

Conread position: 1-525
Cow position: chr21:2878089-2878623 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 48

Conread position: 1-525
Cow position: chr21:4732791-4733321 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 240

Conread position: 1-525
Cow position: chr21:10571023-10570499 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 79

Conread position: 1-525
Cow position: chr21:11509692-11509153 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 52

Conread position: 1-525
Cow position: chr21:22719349-22719883 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 35

Conread position: 1-525
Cow position: chr21:26756970-26757517 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-525
Cow position: chr21:27619767-27620288 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 237

Conread position: 1-525
Cow position: chr21:31512519-31513057 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 18

Conread position: 1-525
Cow position: chr21:33257309-33256768 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-525
Cow position: chr21:33316613-33317154 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-525
Cow position: chr21:36534459-36534996 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 280

Conread position: 1-525
Cow position: chr21:49655432-49655971 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 25

Conread position: 1-529
Cow position: chr21:28057038-28056522 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 343
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 73, 128

Conread position: 1-529
Cow position: chr21:28730369-28729846 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 112

Conread position: 1-538
Cow position: chr21:6623573-6623026 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 25

Conread position: 2-321
Cow position: chr21:42558526-42558191 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 283

Conread position: 2-525
Cow position: chr21:2768084-2768631 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 256

Conread position: 5-333
Cow position: chr21:2928126-2928469 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 174

Conread position: 5-374
Cow position: chr21:4567691-4567316 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 166

Conread position: 5-530
Cow position: chr21:7156126-7155601 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 58

Conread position: 6-190
Cow position: chr21:28625464-28625267 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 147
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 69, 171

Conread position: 6-349
Cow position: chr21:1058219-1057851 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 184

Conread position: 6-413
Cow position: chr21:34684778-34684377 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 157

Conread position: 6-418
Cow position: chr21:29423807-29423386 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 272

Conread position: 6-448
Cow position: chr21:33832228-33832690 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 284

Conread position: 6-481
Cow position: chr21:13735414-13735903 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 208

Conread position: 6-495
Cow position: chr21:18285553-18285047 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 174

Conread position: 6-525
Cow position: chr21:1196285-1195751 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 278

Conread position: 6-525
Cow position: chr21:4812594-4813125 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 281

Conread position: 6-525
Cow position: chr21:5020886-5020358 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 167

Conread position: 6-525
Cow position: chr21:9896089-9895575 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 48

Conread position: 6-525
Cow position: chr21:12153559-12153036 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 43

Conread position: 6-525
Cow position: chr21:25190403-25189860 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 283

Conread position: 6-525
Cow position: chr21:27287722-27287194 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 277

Conread position: 6-525
Cow position: chr21:27607945-27608488 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 288

Conread position: 6-525
Cow position: chr21:30595343-30595878 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 278

Conread position: 6-525
Cow position: chr21:43403690-43404225 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position: chr21:47649089-47648551 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 213

Conread position: 6-578
Cow position: chr21:27342664-27343239 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 86

Conread position: 7-302
Cow position: chr21:21216720-21217037 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 266

Conread position: 7-387
Cow position: chr21:471037-470639 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 255

Conread position: 7-425
Cow position: chr21:19967596-19967181 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 286
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 68, 174

Conread position: 7-454
Cow position: chr21:6765272-6765737 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 187

Conread position: 7-499
Cow position: chr21:3766020-3766529 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 177

Conread position: 7-525
Cow position: chr21:10854013-10853477 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 279

Conread position: 7-525
Cow position: chr21:13300556-13300039 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 44

Conread position: 7-550
Cow position: chr21:3047071-3046529 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 13

Conread position: 9-525
Cow position: chr21:32534557-32534051 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 88

Conread position: 10-525
Cow position: chr21:27065855-27066387 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 275

Conread position: 12-525
Cow position: chr21:25157022-25156514 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 55

Conread position: 13-525
Cow position: chr21:4079755-4079255 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 131

Conread position: 20-525
Cow position: chr21:17144422-17143901 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 260

Conread position: 36-525
Cow position: chr21:30565463-30564966 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 248

Conread position: 37-357
Cow position: chr21:18818927-18819255 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 76

Conread position: 42-308
Cow position: chr21:23585804-23585522 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 243

Conread position: 51-412
Cow position: chr21:29500234-29499867 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 54

Conread position: 60-500
Cow position: chr21:4189234-4188773 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 119

Conread position: 61-355
Cow position: chr21:6713962-6714263 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 193
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 17, 110

Conread position: 73-525
Cow position: chr21:24826457-24826922 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 202

Conread position: 87-425
Cow position: chr21:28881327-28880988 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 158

Conread position: 106-420
Cow position: chr21:27522194-27522499 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 14

Conread position: 108-477
Cow position: chr21:25987052-25986677 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 168

Conread position: 111-523
Cow position: chr21:26615260-26615657 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 253
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 82, 132

Conread position: 125-473
Cow position: chr21:27375723-27375369 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 148

Conread position: 144-350
Cow position: chr21:36892864-36893069 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 129
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 124, 0

Conread position: 152-356
Cow position: chr21:1284363-1284564 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 162
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 11, 0

Conread position: 152-525
Cow position: chr21:33420392-33420764 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 11

Conread position: 163-511
Cow position: chr21:26699094-26699439 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 105

Conread position: 164-528
Cow position: chr21:13315017-13314662 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 50

Conread position: 170-525
Cow position: chr21:3804214-3804568 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 98

Conread position: 228-529
Cow position: chr21:25603976-25604272 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 207
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 194, 27

Conread position: 281-479
Cow position: chr21:4283097-4283296 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 92

Conread position: 282-525
Cow position: chr21:13111942-13112179 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 86

Conread position: 282-525
Cow position: chr21:44762513-44762749 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 188
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 143, 69

Conread position: 298-524
Cow position: chr21:28476367-28476593 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 75

Show alignments to all cow chromosomes.