Cow genome map
| Conread name: | rcki31_m16.y1 |
| Conread position: | 1-212 |
| Cow position: | chr23:362069-362297 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 1-289 |
| Cow position: | chr23:29471738-29472040 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 179 |
| Conread position: | 1-347 |
| Cow position: | chr23:29446377-29446735 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 179 |
| Conread position: | 1-396 |
| Cow position: | chr23:24098699-24098291 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 23 |
| Conread position: | 1-411 |
| Cow position: | chr23:1535689-1535276 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 173 |
| Conread position: | 1-425 |
| Cow position: | chr23:671743-671308 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 24 |
| Conread position: | 1-509 |
| Cow position: | chr23:1310999-1311522 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 55 |
| Conread position: | 1-516 |
| Cow position: | chr23:16057263-16056753 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 81 |
| Conread position: | 1-525 |
| Cow position: | chr23:2408641-2409180 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 178 |
| Conread position: | 1-525 |
| Cow position: | chr23:2791201-2791733 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 58 |
| Conread position: | 1-525 |
| Cow position: | chr23:5624008-5624540 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 48 |
| Conread position: | 1-525 |
| Cow position: | chr23:11128584-11128046 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 29 |
| Conread position: | 1-525 |
| Cow position: | chr23:14265913-14265379 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 261 |
| Conread position: | 1-525 |
| Cow position: | chr23:16495703-16496230 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 277 |
| Conread position: | 1-525 |
| Cow position: | chr23:25357916-25357378 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 34 |
| Conread position: | 1-525 |
| Cow position: | chr23:29043357-29042815 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 392 |
| Conread position: | 3-525 |
| Cow position: | chr23:1048278-1048841 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 306 |
| Conread position: | 6-189 |
| Cow position: | chr23:5539568-5539767 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 69, 174 |
| Conread position: | 6-357 |
| Cow position: | chr23:12978313-12977948 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 62 |
| Conread position: | 6-401 |
| Cow position: | chr23:36308773-36308373 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 9 |
| Conread position: | 6-449 |
| Cow position: | chr23:11376750-11377209 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 9 |
| Conread position: | 6-486 |
| Cow position: | chr23:36027684-36028181 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 279 |
| Conread position: | 6-497 |
| Cow position: | chr23:8291019-8290506 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 43 |
| Conread position: | 6-507 |
| Cow position: | chr23:15180524-15180008 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 57 |
| Conread position: | 6-515 |
| Cow position: | chr23:30622932-30623455 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 209 |
| Conread position: | 6-522 |
| Cow position: | chr23:4437186-4436667 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 142 |
| Conread position: | 6-525 |
| Cow position: | chr23:1398671-1399179 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 15 |
| Conread position: | 6-525 |
| Cow position: | chr23:1959695-1959161 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 279 |
| Conread position: | 6-525 |
| Cow position: | chr23:2023520-2024052 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 275 |
| Conread position: | 6-525 |
| Cow position: | chr23:4636783-4637322 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 283 |
| Conread position: | 6-525 |
| Cow position: | chr23:11344061-11343529 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 275 |
| Conread position: | 6-525 |
| Cow position: | chr23:11782354-11781816 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 279 |
| Conread position: | 6-525 |
| Cow position: | chr23:15215282-15215802 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 116 |
| Conread position: | 6-525 |
| Cow position: | chr23:17000004-16999479 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 309 |
| Conread position: | 6-525 |
| Cow position: | chr23:19637339-19637849 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 169 |
| Conread position: | 6-525 |
| Cow position: | chr23:20152652-20153189 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 279 |
| Conread position: | 6-525 |
| Cow position: | chr23:22143742-22144276 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 280 |
| Conread position: | 6-525 |
| Cow position: | chr23:28915896-28915365 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 193 |
| Conread position: | 6-525 |
| Cow position: | chr23:30634029-30634562 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 276 |
| Conread position: | 6-529 |
| Cow position: | chr23:2761466-2760927 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 279 |
| Conread position: | 6-529 |
| Cow position: | chr23:37198943-37199486 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 15 |
| Conread position: | 7-413 |
| Cow position: | chr23:40890341-40889925 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 381 |
| Conread position: | 9-344 |
| Cow position: | chr23:40553576-40553909 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 86 |
| Conread position: | 9-525 |
| Cow position: | chr23:38027396-38027914 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 40 |
| Conread position: | 15-525 |
| Cow position: | chr23:4517089-4516573 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 251 |
| Conread position: | 16-538 |
| Cow position: | chr23:32007852-32008356 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 81 |
| Conread position: | 19-425 |
| Cow position: | chr23:19493402-19492985 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 264 |
| Conread position: | 26-357 |
| Cow position: | chr23:23192888-23193226 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 244 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 50, 150 |
| Conread position: | 37-252 |
| Cow position: | chr23:25411964-25412195 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 39, 143 |
| Conread position: | 42-425 |
| Cow position: | chr23:27313377-27312981 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 243 |
| Conread position: | 42-500 |
| Cow position: | chr23:1010021-1010487 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 118 |
| Conread position: | 80-468 |
| Cow position: | chr23:31833518-31833909 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 191 |
| Conread position: | 80-484 |
| Cow position: | chr23:34468923-34469326 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 44, 91 |
| Conread position: | 95-525 |
| Cow position: | chr23:34347348-34346906 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 80 |
| Conread position: | 100-349 |
| Cow position: | chr23:28546259-28546510 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 25, 13 |
| Conread position: | 106-525 |
| Cow position: | chr23:1325855-1326282 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 67 |
| Conread position: | 211-525 |
| Cow position: | chr23:13536770-13536464 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 58 |
| Conread position: | 253-419 |
| Cow position: | chr23:36331715-36331551 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 11, 121 |
| Conread position: | 282-425 |
| Cow position: | chr23:39389084-39388944 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 91, 0 |
Show alignments to all cow chromosomes.