Cow genome map
| Conread name: | rcki31_m16.y1 |
| Conread position: | 1-371 |
| Cow position: | chr25:35446304-35445928 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 274 |
| Conread position: | 1-407 |
| Cow position: | chr25:16801798-16801397 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 279 |
| Conread position: | 1-413 |
| Cow position: | chr25:20075835-20075419 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 175 |
| Conread position: | 1-424 |
| Cow position: | chr25:18486821-18486393 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 19 |
| Conread position: | 1-440 |
| Cow position: | chr25:41385740-41386181 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 88 |
| Conread position: | 1-515 |
| Cow position: | chr25:14756052-14756577 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 176 |
| Conread position: | 1-521 |
| Cow position: | chr25:17657975-17657448 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 107 |
| Conread position: | 1-525 |
| Cow position: | chr25:3172055-3172577 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 156 |
| Conread position: | 1-525 |
| Cow position: | chr25:26282387-26281847 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 267 |
| Conread position: | 1-525 |
| Cow position: | chr25:26353422-26353962 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 218 |
| Conread position: | 1-525 |
| Cow position: | chr25:28863232-28862693 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 48 |
| Conread position: | 1-525 |
| Cow position: | chr25:34673225-34673749 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 34 |
| Conread position: | 1-530 |
| Cow position: | chr25:33838736-33838195 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 177 |
| Conread position: | 2-469 |
| Cow position: | chr25:37593765-37593280 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 180 |
| Conread position: | 2-525 |
| Cow position: | chr25:41135389-41135921 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 243 |
| Conread position: | 3-523 |
| Cow position: | chr25:18886123-18886657 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 175 |
| Conread position: | 5-399 |
| Cow position: | chr25:17992788-17993189 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 176 |
| Conread position: | 5-523 |
| Cow position: | chr25:13429757-13430283 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 276 |
| Conread position: | 5-525 |
| Cow position: | chr25:11956184-11955653 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 10 |
| Conread position: | 5-538 |
| Cow position: | chr25:33687848-33688404 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 274 |
| Conread position: | 6-407 |
| Cow position: | chr25:34343552-34343962 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 20 |
| Conread position: | 6-413 |
| Cow position: | chr25:28275313-28275728 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 43 |
| Conread position: | 6-423 |
| Cow position: | chr25:16922437-16922861 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 46 |
| Conread position: | 6-424 |
| Cow position: | chr25:39386474-39386902 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 277 |
| Conread position: | 6-425 |
| Cow position: | chr25:4372356-4372764 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 108 |
| Conread position: | 6-425 |
| Cow position: | chr25:22151463-22151031 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 279 |
| Conread position: | 6-455 |
| Cow position: | chr25:27231705-27231251 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 43 |
| Conread position: | 6-523 |
| Cow position: | chr25:25510247-25509697 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 224 |
| Conread position: | 6-524 |
| Cow position: | chr25:35754887-35755420 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 149 |
| Conread position: | 6-525 |
| Cow position: | chr25:13787322-13786797 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 101 |
| Conread position: | 6-525 |
| Cow position: | chr25:23394220-23393695 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 172 |
| Conread position: | 6-525 |
| Cow position: | chr25:25826811-25826276 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 178 |
| Conread position: | 6-525 |
| Cow position: | chr25:37469159-37468669 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 367 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 71, 87 |
| Conread position: | 6-525 |
| Cow position: | chr25:41121359-41120831 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 276 |
| Conread position: | 6-525 |
| Cow position: | chr25:41356443-41356975 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 330 |
| Conread position: | 6-530 |
| Cow position: | chr25:12938849-12939390 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 279 |
| Conread position: | 6-539 |
| Cow position: | chr25:37648773-37648247 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 56 |
| Conread position: | 7-332 |
| Cow position: | chr25:41364613-41364950 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 63 |
| Conread position: | 7-486 |
| Cow position: | chr25:12082000-12082484 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 73 |
| Conread position: | 9-198 |
| Cow position: | chr25:24776707-24776505 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 66, 168 |
| Conread position: | 9-445 |
| Cow position: | chr25:40321934-40322386 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 277 |
| Conread position: | 9-525 |
| Cow position: | chr25:23325674-23326204 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 272 |
| Conread position: | 26-525 |
| Cow position: | chr25:10137151-10136645 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 155 |
| Conread position: | 27-455 |
| Cow position: | chr25:12756091-12756532 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 282 |
| Conread position: | 46-367 |
| Cow position: | chr25:23366985-23366647 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 135 |
| Conread position: | 59-467 |
| Cow position: | chr25:34668252-34667824 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 24 |
| Conread position: | 86-523 |
| Cow position: | chr25:33574471-33574903 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 22 |
| Conread position: | 92-443 |
| Cow position: | chr25:2507529-2507176 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 62, 48 |
| Conread position: | 98-270 |
| Cow position: | chr25:16308951-16309129 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 107-445 |
| Cow position: | chr25:18452543-18452204 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 236 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 16, 116 |
| Conread position: | 120-425 |
| Cow position: | chr25:2497967-2497669 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 224 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 34, 79 |
| Conread position: | 120-525 |
| Cow position: | chr25:32577430-32577840 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 153 |
| Conread position: | 124-522 |
| Cow position: | chr25:26931324-26930919 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 149 |
| Conread position: | 124-525 |
| Cow position: | chr25:20633988-20633589 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 117 |
| Conread position: | 153-469 |
| Cow position: | chr25:25039443-25039144 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 10 |
| Conread position: | 171-538 |
| Cow position: | chr25:28420527-28420889 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 203 |
| Conread position: | 190-525 |
| Cow position: | chr25:11896774-11896440 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 25 |
| Conread position: | 228-523 |
| Cow position: | chr25:21949917-21949626 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 40 |
Show alignments to all cow chromosomes.