Cow genome map
| Conread name: | rcki31_m16.y1 |
| Conread position: | 1-275 |
| Cow position: | chr27:2936396-2936106 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 77, 43 |
| Conread position: | 1-339 |
| Cow position: | chr27:526485-526155 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 141 |
| Conread position: | 1-355 |
| Cow position: | chr27:10306677-10306322 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 48 |
| Conread position: | 1-357 |
| Cow position: | chr27:25112740-25112364 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 185 |
| Conread position: | 1-368 |
| Cow position: | chr27:24055256-24054899 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 25 |
| Conread position: | 1-399 |
| Cow position: | chr27:15866733-15867132 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 176 |
| Conread position: | 1-443 |
| Cow position: | chr27:13317129-13316678 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 176 |
| Conread position: | 1-479 |
| Cow position: | chr27:15033318-15033812 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 34 |
| Conread position: | 1-511 |
| Cow position: | chr27:15871758-15872272 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 176 |
| Conread position: | 1-514 |
| Cow position: | chr27:13182716-13183219 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 227 |
| Conread position: | 1-524 |
| Cow position: | chr27:8959443-8959995 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 283 |
| Conread position: | 1-525 |
| Cow position: | chr27:344356-344890 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 284 |
| Conread position: | 1-525 |
| Cow position: | chr27:1189230-1188699 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 68 |
| Conread position: | 1-525 |
| Cow position: | chr27:2557420-2557958 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 267 |
| Conread position: | 1-525 |
| Cow position: | chr27:4982934-4982405 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 64 |
| Conread position: | 1-525 |
| Cow position: | chr27:8973016-8972477 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 48 |
| Conread position: | 1-525 |
| Cow position: | chr27:11434736-11434209 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 50 |
| Conread position: | 1-525 |
| Cow position: | chr27:25800637-25801172 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 262 |
| Conread position: | 1-525 |
| Cow position: | chr27:26330506-26329966 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 284 |
| Conread position: | 1-525 |
| Cow position: | chr27:26856614-26856091 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 180 |
| Conread position: | 1-525 |
| Cow position: | chr27:27557372-27556839 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 176 |
| Conread position: | 1-525 |
| Cow position: | chr27:30306692-30307235 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 287 |
| Conread position: | 1-535 |
| Cow position: | chr27:26785386-26784846 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 39 |
| Conread position: | 5-425 |
| Cow position: | chr27:13901693-13901261 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 279 |
| Conread position: | 6-413 |
| Cow position: | chr27:2332069-2331652 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 20 |
| Conread position: | 6-423 |
| Cow position: | chr27:2682091-2681660 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 177 |
| Conread position: | 6-495 |
| Cow position: | chr27:15349204-15348725 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 20 |
| Conread position: | 6-523 |
| Cow position: | chr27:15633774-15634306 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 247 |
| Conread position: | 6-525 |
| Cow position: | chr27:1081607-1082129 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 68 |
| Conread position: | 6-525 |
| Cow position: | chr27:5925831-5925306 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 9 |
| Conread position: | 6-525 |
| Cow position: | chr27:5990486-5991011 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 39 |
| Conread position: | 6-525 |
| Cow position: | chr27:8201505-8200972 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 280 |
| Conread position: | 6-525 |
| Cow position: | chr27:8427427-8426890 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 165 |
| Conread position: | 6-525 |
| Cow position: | chr27:11481500-11480964 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 279 |
| Conread position: | 6-525 |
| Cow position: | chr27:24295691-24296236 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 288 |
| Conread position: | 6-529 |
| Cow position: | chr27:15406188-15405673 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 74 |
| Conread position: | 6-537 |
| Cow position: | chr27:8291418-8290861 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 183 |
| Conread position: | 7-218 |
| Cow position: | chr27:13273120-13272907 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 114, 12 |
| Conread position: | 7-349 |
| Cow position: | chr27:12239635-12239278 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 277 |
| Conread position: | 7-506 |
| Cow position: | chr27:27930769-27930259 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 19 |
| Conread position: | 7-525 |
| Cow position: | chr27:21452014-21451478 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 177 |
| Conread position: | 9-317 |
| Cow position: | chr27:30583345-30583660 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 114, 22 |
| Conread position: | 10-223 |
| Cow position: | chr27:28293857-28294076 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 44, 165 |
| Conread position: | 10-498 |
| Cow position: | chr27:30783477-30782965 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 284 |
| Conread position: | 62-525 |
| Cow position: | chr27:19423866-19424345 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 216 |
| Conread position: | 70-461 |
| Cow position: | chr27:29467430-29467029 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 157 |
| Conread position: | 82-525 |
| Cow position: | chr27:14380788-14380354 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 91 |
| Conread position: | 120-525 |
| Cow position: | chr27:25799701-25799290 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 49 |
| Conread position: | 122-425 |
| Cow position: | chr27:15870579-15870873 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 85 |
| Conread position: | 122-525 |
| Cow position: | chr27:27045615-27045216 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 80 |
| Conread position: | 126-321 |
| Cow position: | chr27:24205697-24205896 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 27, 43 |
| Conread position: | 151-461 |
| Cow position: | chr27:15697749-15697447 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 12 |
| Conread position: | 229-510 |
| Cow position: | chr27:27666338-27666056 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 219 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 98, 31 |
Show alignments to all cow chromosomes.