Cow genome map

Conread name: rcki31_m16.y1

Conread position: 1-319
Cow position:
Alignm length: 329
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 51

Conread position: 1-330
Cow position:
Alignm length: 346
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 230

Conread position: 1-382
Cow position:
Alignm length: 400
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 48

Conread position: 1-389
Cow position:
Alignm length: 398
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 62

Conread position: 1-398
Cow position:
Alignm length: 412
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 176

Conread position: 1-436
Cow position:
Alignm length: 455
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 180

Conread position: 1-443
Cow position:
Alignm length: 463
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 57

Conread position: 1-472
Cow position:
Alignm length: 505
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 39

Conread position: 1-497
Cow position:
Alignm length: 521
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 180

Conread position: 1-523
Cow position:
Alignm length: 546
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 39

Conread position: 1-523
Cow position:
Alignm length: 544
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 44

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 241

Conread position: 1-525
Cow position:
Alignm length: 547
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 285

Conread position: 1-525
Cow position:
Alignm length: 549
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 291

Conread position: 1-525
Cow position:
Alignm length: 541
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 279

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-525
Cow position:
Alignm length: 541
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 93

Conread position: 1-525
Cow position:
Alignm length: 547
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 25

Conread position: 1-525
Cow position:
Alignm length: 543
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 48

Conread position: 1-525
Cow position:
Alignm length: 547
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 285

Conread position: 1-525
Cow position:
Alignm length: 547
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 285

Conread position: 1-525
Cow position:
Alignm length: 551
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 246

Conread position: 1-525
Cow position:
Alignm length: 545
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 178

Conread position: 1-525
Cow position:
Alignm length: 547
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 285

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-529
Cow position:
Alignm length: 549
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 182

Conread position: 1-546
Cow position:
Alignm length: 576
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 176

Conread position: 2-318
Cow position:
Alignm length: 330
Alignm identity: 233
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 69, 21

Conread position: 3-525
Cow position:
Alignm length: 544
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 23

Conread position: 4-261
Cow position:
Alignm length: 278
Alignm identity: 205
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 71, 179

Conread position: 5-411
Cow position:
Alignm length: 411
Alignm identity: 277
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 117, 71

Conread position: 5-491
Cow position:
Alignm length: 508
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 175

Conread position: 5-525
Cow position:
Alignm length: 539
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 172

Conread position: 6-321
Cow position:
Alignm length: 324
Alignm identity: 235
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 71, 91

Conread position: 6-404
Cow position:
Alignm length: 417
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 280

Conread position: 6-445
Cow position:
Alignm length: 462
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 280

Conread position: 6-464
Cow position:
Alignm length: 477
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 42

Conread position: 6-486
Cow position:
Alignm length: 498
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 34

Conread position: 6-509
Cow position:
Alignm length: 522
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 9

Conread position: 6-512
Cow position:
Alignm length: 521
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 43

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 38

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 262

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 279

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 551
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 175

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 543
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 174

Conread position: 7-482
Cow position:
Alignm length: 502
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 105

Conread position: 7-525
Cow position:
Alignm length: 539
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 277

Conread position: 7-525
Cow position:
Alignm length: 531
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 18

Conread position: 7-540
Cow position:
Alignm length: 556
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 48

Conread position: 8-525
Cow position:
Alignm length: 541
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 279

Conread position: 8-529
Cow position:
Alignm length: 537
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 375

Conread position: 12-413
Cow position:
Alignm length: 409
Alignm identity: 263
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 12, 107

Conread position: 13-525
Cow position:
Alignm length: 532
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 81

Conread position: 18-371
Cow position:
Alignm length: 379
Alignm identity: 270
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 52, 176

Conread position: 18-538
Cow position:
Alignm length: 540
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 263

Conread position: 19-525
Cow position:
Alignm length: 530
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 260

Conread position: 36-525
Cow position:
Alignm length: 510
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 143

Conread position: 71-515
Cow position:
Alignm length: 467
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 110

Conread position: 76-309
Cow position:
Alignm length: 244
Alignm identity: 178
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 28, 202

Conread position: 77-542
Cow position:
Alignm length: 480
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 18

Conread position: 78-525
Cow position:
Alignm length: 461
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 24

Conread position: 120-493
Cow position:
Alignm length: 381
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 49

Conread position: 120-525
Cow position:
Alignm length: 415
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 153

Conread position: 122-469
Cow position:
Alignm length: 357
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 159

Conread position: 163-529
Cow position:
Alignm length: 371
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 92

Conread position: 167-499
Cow position:
Alignm length: 337
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 64

Conread position: 183-371
Cow position:
Alignm length: 191
Alignm identity: 147
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 139, 118

Conread position: 200-525
Cow position:
Alignm length: 335
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 17

Conread position: 202-525
Cow position:
Alignm length: 326
Alignm identity: 219
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 48, 75

Conread position: 205-525
Cow position:
Alignm length: 323
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 64

Conread position: 210-387
Cow position:
Alignm length: 179
Alignm identity: 145
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 140, 58

Conread position: 210-525
Cow position:
Alignm length: 322
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 15

Conread position: 253-516
Cow position:
Alignm length: 275
Alignm identity: 191
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 48, 16

Conread position: 263-525
Cow position:
Alignm length: 269
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 110

Conread position: 265-525
Cow position:
Alignm length: 265
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 63

Show alignments to all cow chromosomes.