Cow genome map
| Conread name: | rcki31_m16.y1 |
| Conread position: | 1-319 |
| Cow position: | chr28:5817219-5816907 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 51 |
| Conread position: | 1-330 |
| Cow position: | chr28:6319531-6319872 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 230 |
| Conread position: | 1-382 |
| Cow position: | chr28:5768567-5768174 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 48 |
| Conread position: | 1-389 |
| Cow position: | chr28:19300643-19300276 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 62 |
| Conread position: | 1-398 |
| Cow position: | chr28:23868854-23868448 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 176 |
| Conread position: | 1-436 |
| Cow position: | chr28:34878830-34879267 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 180 |
| Conread position: | 1-443 |
| Cow position: | chr28:10578476-10578934 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 57 |
| Conread position: | 1-472 |
| Cow position: | chr28:23615773-23615275 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 39 |
| Conread position: | 1-497 |
| Cow position: | chr28:1383833-1384348 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 180 |
| Conread position: | 1-523 |
| Cow position: | chr28:6473639-6474171 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 39 |
| Conread position: | 1-523 |
| Cow position: | chr28:17392053-17391514 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 284 |
| Conread position: | 1-525 |
| Cow position: | chr28:445019-444487 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 44 |
| Conread position: | 1-525 |
| Cow position: | chr28:1956983-1956448 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 241 |
| Conread position: | 1-525 |
| Cow position: | chr28:7005648-7005106 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 285 |
| Conread position: | 1-525 |
| Cow position: | chr28:7744724-7744182 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 291 |
| Conread position: | 1-525 |
| Cow position: | chr28:8717338-8717874 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 279 |
| Conread position: | 1-525 |
| Cow position: | chr28:9287773-9288314 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 284 |
| Conread position: | 1-525 |
| Cow position: | chr28:10295410-10294892 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 93 |
| Conread position: | 1-525 |
| Cow position: | chr28:10772696-10772162 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 25 |
| Conread position: | 1-525 |
| Cow position: | chr28:14666756-14666224 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 48 |
| Conread position: | 1-525 |
| Cow position: | chr28:15916906-15917446 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 285 |
| Conread position: | 1-525 |
| Cow position: | chr28:18516525-18517066 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 285 |
| Conread position: | 1-525 |
| Cow position: | chr28:23793956-23794487 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 246 |
| Conread position: | 1-525 |
| Cow position: | chr28:26923011-26923551 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 178 |
| Conread position: | 1-525 |
| Cow position: | chr28:29036031-29036573 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 285 |
| Conread position: | 1-525 |
| Cow position: | chr28:33640188-33639649 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 284 |
| Conread position: | 1-529 |
| Cow position: | chr28:29435185-29435719 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 182 |
| Conread position: | 1-546 |
| Cow position: | chr28:5825465-5824897 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 176 |
| Conread position: | 2-318 |
| Cow position: | chr28:22307793-22307478 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 69, 21 |
| Conread position: | 3-525 |
| Cow position: | chr28:33255934-33255400 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 23 |
| Conread position: | 4-261 |
| Cow position: | chr28:13473227-13472953 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 71, 179 |
| Conread position: | 5-411 |
| Cow position: | chr28:16543116-16543502 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 117, 71 |
| Conread position: | 5-491 |
| Cow position: | chr28:10642928-10643410 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 175 |
| Conread position: | 5-525 |
| Cow position: | chr28:6047407-6046875 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 172 |
| Conread position: | 6-321 |
| Cow position: | chr28:1214189-1214497 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 235 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 71, 91 |
| Conread position: | 6-404 |
| Cow position: | chr28:23544238-23543830 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 280 |
| Conread position: | 6-445 |
| Cow position: | chr28:12935658-12936115 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 280 |
| Conread position: | 6-464 |
| Cow position: | chr28:24487780-24488245 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 42 |
| Conread position: | 6-486 |
| Cow position: | chr28:10473568-10473085 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 34 |
| Conread position: | 6-509 |
| Cow position: | chr28:5773021-5772516 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 9 |
| Conread position: | 6-512 |
| Cow position: | chr28:15600160-15600645 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 43 |
| Conread position: | 6-525 |
| Cow position: | chr28:786273-785746 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 38 |
| Conread position: | 6-525 |
| Cow position: | chr28:5211736-5211201 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 262 |
| Conread position: | 6-525 |
| Cow position: | chr28:5941101-5940565 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 279 |
| Conread position: | 6-525 |
| Cow position: | chr28:13463578-13463042 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 279 |
| Conread position: | 6-525 |
| Cow position: | chr28:17663334-17663870 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 279 |
| Conread position: | 6-525 |
| Cow position: | chr28:25409245-25408709 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 175 |
| Conread position: | 6-525 |
| Cow position: | chr28:29823800-29823265 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 279 |
| Conread position: | 6-525 |
| Cow position: | chr28:30098491-30097957 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 279 |
| Conread position: | 6-525 |
| Cow position: | chr28:30870688-30870159 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 174 |
| Conread position: | 7-482 |
| Cow position: | chr28:12406563-12407057 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 105 |
| Conread position: | 7-525 |
| Cow position: | chr28:5111110-5111642 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 277 |
| Conread position: | 7-525 |
| Cow position: | chr28:32785826-32786347 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 18 |
| Conread position: | 7-540 |
| Cow position: | chr28:4817371-4816840 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 48 |
| Conread position: | 8-525 |
| Cow position: | chr28:6959844-6959308 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 279 |
| Conread position: | 8-529 |
| Cow position: | chr28:600576-601109 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 375 |
| Conread position: | 12-413 |
| Cow position: | chr28:20774279-20774671 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 12, 107 |
| Conread position: | 13-525 |
| Cow position: | chr28:32300992-32301508 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 81 |
| Conread position: | 18-371 |
| Cow position: | chr28:2417393-2417029 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 270 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 52, 176 |
| Conread position: | 18-538 |
| Cow position: | chr28:11501623-11502152 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 263 |
| Conread position: | 19-525 |
| Cow position: | chr28:21104377-21104892 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 260 |
| Conread position: | 36-525 |
| Cow position: | chr28:10479314-10479809 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 143 |
| Conread position: | 71-515 |
| Cow position: | chr28:4457873-4457412 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 110 |
| Conread position: | 76-309 |
| Cow position: | chr28:17131598-17131840 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 28, 202 |
| Conread position: | 77-542 |
| Cow position: | chr28:7784688-7785159 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 18 |
| Conread position: | 78-525 |
| Cow position: | chr28:25701414-25701857 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 24 |
| Conread position: | 120-493 |
| Cow position: | chr28:15687780-15687412 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 49 |
| Conread position: | 120-525 |
| Cow position: | chr28:20934923-20935333 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 153 |
| Conread position: | 122-469 |
| Cow position: | chr28:24620377-24620727 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 159 |
| Conread position: | 163-529 |
| Cow position: | chr28:6471999-6472362 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 92 |
| Conread position: | 167-499 |
| Cow position: | chr28:23025809-23025479 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 64 |
| Conread position: | 183-371 |
| Cow position: | chr28:34200623-34200812 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 139, 118 |
| Conread position: | 200-525 |
| Cow position: | chr28:30533656-30533981 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 17 |
| Conread position: | 202-525 |
| Cow position: | chr28:7654230-7654539 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 48, 75 |
| Conread position: | 205-525 |
| Cow position: | chr28:16041264-16041575 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 64 |
| Conread position: | 210-387 |
| Cow position: | chr28:28340249-28340077 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 140, 58 |
| Conread position: | 210-525 |
| Cow position: | chr28:22229939-22230253 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 15 |
| Conread position: | 253-516 |
| Cow position: | chr28:12047189-12047448 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 48, 16 |
| Conread position: | 263-525 |
| Cow position: | chr28:1197470-1197206 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 110 |
| Conread position: | 265-525 |
| Cow position: | chr28:23839354-23839099 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 63 |
Show alignments to all cow chromosomes.