Cow genome map
| Conread name: | rcki31_m16.y1 |
| Conread position: | 1-249 |
| Cow position: | chr29:31786063-31785813 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 75, 19 |
| Conread position: | 1-301 |
| Cow position: | chr29:27814367-27814067 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 48 |
| Conread position: | 1-309 |
| Cow position: | chr29:14116402-14116084 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 48 |
| Conread position: | 1-352 |
| Cow position: | chr29:1743090-1742728 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 166 |
| Conread position: | 1-356 |
| Cow position: | chr29:35076721-35076344 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 14 |
| Conread position: | 1-357 |
| Cow position: | chr29:7290135-7289768 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 190 |
| Conread position: | 1-442 |
| Cow position: | chr29:29550110-29549661 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 179 |
| Conread position: | 1-481 |
| Cow position: | chr29:9638947-9639436 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 64 |
| Conread position: | 1-485 |
| Cow position: | chr29:16614932-16615418 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 165 |
| Conread position: | 1-523 |
| Cow position: | chr29:44878-45409 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 279 |
| Conread position: | 1-524 |
| Cow position: | chr29:9079213-9079748 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 121 |
| Conread position: | 1-525 |
| Cow position: | chr29:5240986-5240444 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 202 |
| Conread position: | 1-525 |
| Cow position: | chr29:6218226-6218756 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 197 |
| Conread position: | 1-525 |
| Cow position: | chr29:7427550-7428092 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 285 |
| Conread position: | 1-525 |
| Cow position: | chr29:13058294-13057793 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 135 |
| Conread position: | 1-525 |
| Cow position: | chr29:16065300-16064761 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 284 |
| Conread position: | 1-525 |
| Cow position: | chr29:16347802-16347256 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 145 |
| Conread position: | 1-525 |
| Cow position: | chr29:19619678-19620218 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 284 |
| Conread position: | 1-525 |
| Cow position: | chr29:19657472-19656950 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 284 |
| Conread position: | 1-525 |
| Cow position: | chr29:22279963-22279424 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 277 |
| Conread position: | 1-525 |
| Cow position: | chr29:26161244-26161787 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 229 |
| Conread position: | 1-525 |
| Cow position: | chr29:40498289-40498825 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 280 |
| Conread position: | 1-529 |
| Cow position: | chr29:43327106-43326560 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 285 |
| Conread position: | 1-536 |
| Cow position: | chr29:30432604-30433152 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 180 |
| Conread position: | 1-537 |
| Cow position: | chr29:13027794-13027258 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 48 |
| Conread position: | 1-548 |
| Cow position: | chr29:32732689-32732129 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 182 |
| Conread position: | 2-522 |
| Cow position: | chr29:11365607-11365074 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 180 |
| Conread position: | 3-495 |
| Cow position: | chr29:38229592-38229087 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 278 |
| Conread position: | 5-363 |
| Cow position: | chr29:108965-108597 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 173 |
| Conread position: | 5-371 |
| Cow position: | chr29:34806249-34806617 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 197 |
| Conread position: | 5-525 |
| Cow position: | chr29:8623629-8624146 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 44 |
| Conread position: | 6-219 |
| Cow position: | chr29:41183595-41183825 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 6-374 |
| Cow position: | chr29:42940557-42940183 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 91 |
| Conread position: | 6-375 |
| Cow position: | chr29:43729423-43729043 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 233 |
| Conread position: | 6-517 |
| Cow position: | chr29:14207982-14208502 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 224 |
| Conread position: | 6-523 |
| Cow position: | chr29:35273453-35273987 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 279 |
| Conread position: | 6-524 |
| Cow position: | chr29:21255548-21255009 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 291 |
| Conread position: | 6-525 |
| Cow position: | chr29:2103427-2102897 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 272 |
| Conread position: | 6-525 |
| Cow position: | chr29:6935069-6934542 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 274 |
| Conread position: | 6-525 |
| Cow position: | chr29:10820129-10820665 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 279 |
| Conread position: | 6-525 |
| Cow position: | chr29:19514753-19515294 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 285 |
| Conread position: | 6-525 |
| Cow position: | chr29:28696794-28697328 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 278 |
| Conread position: | 6-525 |
| Cow position: | chr29:32543719-32543187 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 9 |
| Conread position: | 6-525 |
| Cow position: | chr29:39076133-39076668 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 279 |
| Conread position: | 6-525 |
| Cow position: | chr29:45208085-45207561 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 40 |
| Conread position: | 6-525 |
| Cow position: | chr29:45462817-45462283 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 214 |
| Conread position: | 6-529 |
| Cow position: | chr29:2837750-2838290 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 279 |
| Conread position: | 6-529 |
| Cow position: | chr29:34794273-34794817 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 278 |
| Conread position: | 7-450 |
| Cow position: | chr29:14037269-14037722 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 246 |
| Conread position: | 7-466 |
| Cow position: | chr29:5977747-5978209 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 149 |
| Conread position: | 7-516 |
| Cow position: | chr29:38349777-38350296 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 212 |
| Conread position: | 7-525 |
| Cow position: | chr29:10643830-10644361 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 240 |
| Conread position: | 7-525 |
| Cow position: | chr29:23980290-23979761 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 273 |
| Conread position: | 7-525 |
| Cow position: | chr29:42807567-42807041 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 35 |
| Conread position: | 8-525 |
| Cow position: | chr29:7811612-7812147 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 278 |
| Conread position: | 8-525 |
| Cow position: | chr29:10452235-10452765 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 41 |
| Conread position: | 11-537 |
| Cow position: | chr29:7664421-7664963 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 168 |
| Conread position: | 37-536 |
| Cow position: | chr29:4200944-4200419 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 140 |
| Conread position: | 42-458 |
| Cow position: | chr29:5961553-5961122 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 243 |
| Conread position: | 47-525 |
| Cow position: | chr29:35002129-35002607 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 238 |
| Conread position: | 71-424 |
| Cow position: | chr29:27259364-27259730 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 108 |
| Conread position: | 72-481 |
| Cow position: | chr29:16170030-16170452 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 209 |
| Conread position: | 82-525 |
| Cow position: | chr29:36633857-36634300 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 91 |
| Conread position: | 85-525 |
| Cow position: | chr29:27858050-27857622 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 17 |
| Conread position: | 92-525 |
| Cow position: | chr29:3584726-3585159 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 182 |
| Conread position: | 101-517 |
| Cow position: | chr29:6871800-6872216 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 73 |
| Conread position: | 120-498 |
| Cow position: | chr29:40954434-40954818 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 154 |
| Conread position: | 120-524 |
| Cow position: | chr29:35280656-35281064 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 220 |
| Conread position: | 121-392 |
| Cow position: | chr29:24951928-24951657 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 203 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 32, 57 |
| Conread position: | 163-525 |
| Cow position: | chr29:16101706-16102067 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 105 |
| Conread position: | 164-525 |
| Cow position: | chr29:34331017-34331379 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 105 |
| Conread position: | 198-412 |
| Cow position: | chr29:2184780-2184578 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 198, 42 |
| Conread position: | 204-297 |
| Cow position: | chr29:21325789-21325881 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 81 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 204-523 |
| Cow position: | chr29:407903-408212 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 53 |
| Conread position: | 226-525 |
| Cow position: | chr29:2463523-2463821 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 42 |
| Conread position: | 232-525 |
| Cow position: | chr29:9331240-9330967 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 268, 36 |
| Conread position: | 233-525 |
| Cow position: | chr29:31094243-31094536 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 35 |
| Conread position: | 234-425 |
| Cow position: | chr29:29571363-29571178 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 141, 35 |
| Conread position: | 241-478 |
| Cow position: | chr29:10652089-10651853 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 174, 119 |
| Conread position: | 250-525 |
| Cow position: | chr29:19397813-19397541 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 18 |
| Conread position: | 253-525 |
| Cow position: | chr29:10846278-10846006 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 15 |
Show alignments to all cow chromosomes.