Cow genome map

Conread name: rcki31_m16.y1

Conread position: 1-249
Cow position:
Alignm length: 261
Alignm identity: 189
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 75, 19

Conread position: 1-301
Cow position:
Alignm length: 309
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 48

Conread position: 1-309
Cow position:
Alignm length: 324
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 48

Conread position: 1-352
Cow position:
Alignm length: 367
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 166

Conread position: 1-356
Cow position:
Alignm length: 380
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 14

Conread position: 1-357
Cow position:
Alignm length: 378
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 190

Conread position: 1-442
Cow position:
Alignm length: 462
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 179

Conread position: 1-481
Cow position:
Alignm length: 495
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 64

Conread position: 1-485
Cow position:
Alignm length: 501
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 165

Conread position: 1-523
Cow position:
Alignm length: 539
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 279

Conread position: 1-524
Cow position:
Alignm length: 543
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 121

Conread position: 1-525
Cow position:
Alignm length: 548
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 202

Conread position: 1-525
Cow position:
Alignm length: 542
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 197

Conread position: 1-525
Cow position:
Alignm length: 547
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 285

Conread position: 1-525
Cow position:
Alignm length: 537
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 135

Conread position: 1-525
Cow position:
Alignm length: 545
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-525
Cow position:
Alignm length: 555
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 145

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-525
Cow position:
Alignm length: 542
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 277

Conread position: 1-525
Cow position:
Alignm length: 550
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 229

Conread position: 1-525
Cow position:
Alignm length: 543
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 280

Conread position: 1-529
Cow position:
Alignm length: 551
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 285

Conread position: 1-536
Cow position:
Alignm length: 558
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 180

Conread position: 1-537
Cow position:
Alignm length: 553
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 48

Conread position: 1-548
Cow position:
Alignm length: 570
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 182

Conread position: 2-522
Cow position:
Alignm length: 545
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 180

Conread position: 3-495
Cow position:
Alignm length: 510
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 278

Conread position: 5-363
Cow position:
Alignm length: 374
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 173

Conread position: 5-371
Cow position:
Alignm length: 385
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 197

Conread position: 5-525
Cow position:
Alignm length: 538
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 44

Conread position: 6-219
Cow position:
Alignm length: 231
Alignm identity: 169
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 69, 0

Conread position: 6-374
Cow position:
Alignm length: 383
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 91

Conread position: 6-375
Cow position:
Alignm length: 385
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 233

Conread position: 6-517
Cow position:
Alignm length: 529
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 224

Conread position: 6-523
Cow position:
Alignm length: 539
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-524
Cow position:
Alignm length: 551
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 291

Conread position: 6-525
Cow position:
Alignm length: 540
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 272

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 274

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 548
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 285

Conread position: 6-525
Cow position:
Alignm length: 540
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 278

Conread position: 6-525
Cow position:
Alignm length: 542
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 9

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 535
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 40

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 214

Conread position: 6-529
Cow position:
Alignm length: 545
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-529
Cow position:
Alignm length: 549
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 278

Conread position: 7-450
Cow position:
Alignm length: 468
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 246

Conread position: 7-466
Cow position:
Alignm length: 477
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 149

Conread position: 7-516
Cow position:
Alignm length: 532
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 212

Conread position: 7-525
Cow position:
Alignm length: 540
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 240

Conread position: 7-525
Cow position:
Alignm length: 535
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 273

Conread position: 7-525
Cow position:
Alignm length: 540
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 35

Conread position: 8-525
Cow position:
Alignm length: 540
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 278

Conread position: 8-525
Cow position:
Alignm length: 539
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 41

Conread position: 11-537
Cow position:
Alignm length: 552
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 168

Conread position: 37-536
Cow position:
Alignm length: 533
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 140

Conread position: 42-458
Cow position:
Alignm length: 438
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 243

Conread position: 47-525
Cow position:
Alignm length: 496
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 238

Conread position: 71-424
Cow position:
Alignm length: 372
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 108

Conread position: 72-481
Cow position:
Alignm length: 429
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 209

Conread position: 82-525
Cow position:
Alignm length: 460
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 91

Conread position: 85-525
Cow position:
Alignm length: 451
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 17

Conread position: 92-525
Cow position:
Alignm length: 453
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 182

Conread position: 101-517
Cow position:
Alignm length: 429
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 73

Conread position: 120-498
Cow position:
Alignm length: 389
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 154

Conread position: 120-524
Cow position:
Alignm length: 427
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 220

Conread position: 121-392
Cow position:
Alignm length: 278
Alignm identity: 203
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 32, 57

Conread position: 163-525
Cow position:
Alignm length: 367
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 105

Conread position: 164-525
Cow position:
Alignm length: 367
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 105

Conread position: 198-412
Cow position:
Alignm length: 219
Alignm identity: 159
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 198, 42

Conread position: 204-297
Cow position:
Alignm length: 94
Alignm identity: 81
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 64, 0

Conread position: 204-523
Cow position:
Alignm length: 324
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 53

Conread position: 226-525
Cow position:
Alignm length: 304
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 42

Conread position: 232-525
Cow position:
Alignm length: 298
Alignm identity: 217
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 268, 36

Conread position: 233-525
Cow position:
Alignm length: 298
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 35

Conread position: 234-425
Cow position:
Alignm length: 193
Alignm identity: 140
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 141, 35

Conread position: 241-478
Cow position:
Alignm length: 242
Alignm identity: 169
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 174, 119

Conread position: 250-525
Cow position:
Alignm length: 281
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 18

Conread position: 253-525
Cow position:
Alignm length: 277
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 15

Show alignments to all cow chromosomes.