Cow genome map

Conread name: rcki31_m16.y1

Conread position: 1-242
Cow position:
Alignm length: 251
Alignm identity: 183
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 74, 116

Conread position: 1-259
Cow position:
Alignm length: 281
Alignm identity: 214
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 74, 268

Conread position: 1-273
Cow position:
Alignm length: 286
Alignm identity: 189
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 54, 0

Conread position: 1-290
Cow position:
Alignm length: 302
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 174

Conread position: 1-328
Cow position:
Alignm length: 346
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 285

Conread position: 1-330
Cow position:
Alignm length: 347
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 255

Conread position: 1-335
Cow position:
Alignm length: 353
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 247

Conread position: 1-346
Cow position:
Alignm length: 362
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 283

Conread position: 1-353
Cow position:
Alignm length: 366
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 280

Conread position: 1-354
Cow position:
Alignm length: 371
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 262

Conread position: 1-358
Cow position:
Alignm length: 375
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 216

Conread position: 1-411
Cow position:
Alignm length: 425
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 75

Conread position: 1-411
Cow position:
Alignm length: 431
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 211

Conread position: 1-418
Cow position:
Alignm length: 429
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 33

Conread position: 1-424
Cow position:
Alignm length: 441
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-523
Cow position:
Alignm length: 543
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 283

Conread position: 1-523
Cow position:
Alignm length: 533
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 68

Conread position: 1-523
Cow position:
Alignm length: 544
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 284

Conread position: 1-523
Cow position:
Alignm length: 544
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 44

Conread position: 1-523
Cow position:
Alignm length: 547
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 181

Conread position: 1-524
Cow position:
Alignm length: 546
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 32

Conread position: 1-525
Cow position:
Alignm length: 548
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 215

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 48

Conread position: 1-525
Cow position:
Alignm length: 550
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 288

Conread position: 1-525
Cow position:
Alignm length: 547
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-525
Cow position:
Alignm length: 543
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 77

Conread position: 1-525
Cow position:
Alignm length: 561
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-525
Cow position:
Alignm length: 540
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 109

Conread position: 1-525
Cow position:
Alignm length: 538
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 280

Conread position: 1-525
Cow position:
Alignm length: 548
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 205

Conread position: 1-525
Cow position:
Alignm length: 542
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 73

Conread position: 1-525
Cow position:
Alignm length: 545
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 283

Conread position: 1-525
Cow position:
Alignm length: 543
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 281

Conread position: 1-525
Cow position:
Alignm length: 547
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 180

Conread position: 1-525
Cow position:
Alignm length: 545
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 25

Conread position: 1-525
Cow position:
Alignm length: 542
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 24

Conread position: 1-525
Cow position:
Alignm length: 545
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 188

Conread position: 1-525
Cow position:
Alignm length: 561
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 55

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 79

Conread position: 1-525
Cow position:
Alignm length: 541
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 59

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 229

Conread position: 1-525
Cow position:
Alignm length: 547
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 283

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-525
Cow position:
Alignm length: 543
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 176

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 284

Conread position: 1-530
Cow position:
Alignm length: 552
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 213

Conread position: 1-539
Cow position:
Alignm length: 559
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 54

Conread position: 2-445
Cow position:
Alignm length: 461
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 36

Conread position: 2-475
Cow position:
Alignm length: 495
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 282

Conread position: 2-496
Cow position:
Alignm length: 516
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 283

Conread position: 2-524
Cow position:
Alignm length: 536
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 43

Conread position: 2-525
Cow position:
Alignm length: 545
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 217

Conread position: 3-208
Cow position:
Alignm length: 221
Alignm identity: 165
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 73, 0

Conread position: 3-460
Cow position:
Alignm length: 487
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 11

Conread position: 3-523
Cow position:
Alignm length: 541
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 195

Conread position: 5-335
Cow position:
Alignm length: 348
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 175

Conread position: 5-349
Cow position:
Alignm length: 356
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 44

Conread position: 5-516
Cow position:
Alignm length: 539
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 189

Conread position: 5-525
Cow position:
Alignm length: 527
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 82

Conread position: 5-525
Cow position:
Alignm length: 540
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 176

Conread position: 5-525
Cow position:
Alignm length: 550
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 180

Conread position: 6-330
Cow position:
Alignm length: 342
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 274

Conread position: 6-365
Cow position:
Alignm length: 379
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 38

Conread position: 6-383
Cow position:
Alignm length: 393
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 172

Conread position: 6-404
Cow position:
Alignm length: 415
Alignm identity: 286
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 34, 88

Conread position: 6-412
Cow position:
Alignm length: 429
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 51

Conread position: 6-424
Cow position:
Alignm length: 429
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 90

Conread position: 6-449
Cow position:
Alignm length: 464
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 195

Conread position: 6-486
Cow position:
Alignm length: 506
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 8

Conread position: 6-514
Cow position:
Alignm length: 530
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 279

Conread position: 6-515
Cow position:
Alignm length: 536
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 20

Conread position: 6-522
Cow position:
Alignm length: 539
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 175

Conread position: 6-522
Cow position:
Alignm length: 539
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 53

Conread position: 6-522
Cow position:
Alignm length: 529
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 64

Conread position: 6-523
Cow position:
Alignm length: 538
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 20

Conread position: 6-523
Cow position:
Alignm length: 536
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 201

Conread position: 6-525
Cow position:
Alignm length: 545
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 180

Conread position: 6-525
Cow position:
Alignm length: 536
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 88

Conread position: 6-525
Cow position:
Alignm length: 539
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 272

Conread position: 6-525
Cow position:
Alignm length: 542
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 175

Conread position: 6-525
Cow position:
Alignm length: 536
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 362

Conread position: 6-525
Cow position:
Alignm length: 543
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 178

Conread position: 6-525
Cow position:
Alignm length: 533
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 109

Conread position: 6-525
Cow position:
Alignm length: 542
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 551
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 45

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 538
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 43

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 204

Conread position: 6-525
Cow position:
Alignm length: 545
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 49

Conread position: 6-525
Cow position:
Alignm length: 534
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 94

Conread position: 7-283
Cow position:
Alignm length: 293
Alignm identity: 172
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 37, 65

Conread position: 7-294
Cow position:
Alignm length: 305
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 216

Conread position: 7-316
Cow position:
Alignm length: 325
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 149

Conread position: 7-330
Cow position:
Alignm length: 344
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 19

Conread position: 7-363
Cow position:
Alignm length: 373
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 171

Conread position: 7-425
Cow position:
Alignm length: 443
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 58

Conread position: 7-475
Cow position:
Alignm length: 488
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 175

Conread position: 7-506
Cow position:
Alignm length: 521
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 278

Conread position: 7-513
Cow position:
Alignm length: 527
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 271

Conread position: 7-525
Cow position:
Alignm length: 526
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 49

Conread position: 7-525
Cow position:
Alignm length: 540
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 162

Conread position: 7-525
Cow position:
Alignm length: 540
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 278

Conread position: 7-525
Cow position:
Alignm length: 540
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 214

Conread position: 8-356
Cow position:
Alignm length: 364
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 43

Conread position: 8-424
Cow position:
Alignm length: 431
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 173

Conread position: 8-525
Cow position:
Alignm length: 532
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 30

Conread position: 10-523
Cow position:
Alignm length: 547
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 178

Conread position: 13-393
Cow position:
Alignm length: 392
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 100

Conread position: 13-525
Cow position:
Alignm length: 529
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 262

Conread position: 15-525
Cow position:
Alignm length: 533
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 270

Conread position: 32-374
Cow position:
Alignm length: 362
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 24

Conread position: 34-296
Cow position:
Alignm length: 272
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 42-425
Cow position:
Alignm length: 397
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 134

Conread position: 42-525
Cow position:
Alignm length: 504
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 225

Conread position: 42-525
Cow position:
Alignm length: 494
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 107

Conread position: 46-317
Cow position:
Alignm length: 290
Alignm identity: 214
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 29, 197

Conread position: 46-525
Cow position:
Alignm length: 495
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 128

Conread position: 71-525
Cow position:
Alignm length: 474
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 106

Conread position: 83-525
Cow position:
Alignm length: 457
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 90

Conread position: 95-419
Cow position:
Alignm length: 337
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 80

Conread position: 110-423
Cow position:
Alignm length: 320
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 59

Conread position: 120-525
Cow position:
Alignm length: 415
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 153

Conread position: 120-525
Cow position:
Alignm length: 416
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 54

Conread position: 122-525
Cow position:
Alignm length: 423
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 53

Conread position: 122-538
Cow position:
Alignm length: 423
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 43

Conread position: 151-497
Cow position:
Alignm length: 351
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 12

Conread position: 152-536
Cow position:
Alignm length: 394
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 11

Conread position: 154-303
Cow position:
Alignm length: 150
Alignm identity: 116
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 9, 0

Conread position: 163-525
Cow position:
Alignm length: 371
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 105

Conread position: 163-525
Cow position:
Alignm length: 367
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 105

Conread position: 164-524
Cow position:
Alignm length: 365
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 261, 105

Conread position: 176-538
Cow position:
Alignm length: 374
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 11

Conread position: 178-365
Cow position:
Alignm length: 188
Alignm identity: 152
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 90, 0

Conread position: 183-507
Cow position:
Alignm length: 330
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 86

Conread position: 185-525
Cow position:
Alignm length: 341
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 187-489
Cow position:
Alignm length: 307
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 81

Conread position: 189-525
Cow position:
Alignm length: 342
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 66

Conread position: 194-529
Cow position:
Alignm length: 337
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 23

Conread position: 211-472
Cow position:
Alignm length: 266
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 57

Conread position: 219-462
Cow position:
Alignm length: 248
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 49

Conread position: 233-524
Cow position:
Alignm length: 302
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 35

Conread position: 233-525
Cow position:
Alignm length: 297
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 35

Conread position: 247-455
Cow position:
Alignm length: 219
Alignm identity: 173
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 6, 0

Conread position: 251-524
Cow position:
Alignm length: 278
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 17

Conread position: 252-443
Cow position:
Alignm length: 198
Alignm identity: 144
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 16, 160

Conread position: 252-525
Cow position:
Alignm length: 278
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 16

Conread position: 254-525
Cow position:
Alignm length: 283
Alignm identity: 213
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 151, 14

Conread position: 263-409
Cow position:
Alignm length: 148
Alignm identity: 116
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 20, 114

Conread position: 267-391
Cow position:
Alignm length: 125
Alignm identity: 101
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 54, 0

Conread position: 276-525
Cow position:
Alignm length: 255
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 57

Conread position: 282-525
Cow position:
Alignm length: 248
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 91

Show alignments to all cow chromosomes.