Cow genome map

Conread name: rcki31_m16.y1

Conread position: 1-149
Cow position:
Alignm length: 159
Alignm identity: 124
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 74, 0

Conread position: 1-236
Cow position:
Alignm length: 251
Alignm identity: 189
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 76, 176

Conread position: 1-285
Cow position:
Alignm length: 298
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 25

Conread position: 1-362
Cow position:
Alignm length: 382
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 181

Conread position: 1-365
Cow position:
Alignm length: 379
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 280

Conread position: 1-365
Cow position:
Alignm length: 384
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 190

Conread position: 1-412
Cow position:
Alignm length: 423
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 50

Conread position: 1-422
Cow position:
Alignm length: 435
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 39

Conread position: 1-425
Cow position:
Alignm length: 442
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-425
Cow position:
Alignm length: 445
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 287

Conread position: 1-445
Cow position:
Alignm length: 463
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 176

Conread position: 1-486
Cow position:
Alignm length: 507
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 18

Conread position: 1-494
Cow position:
Alignm length: 508
Alignm identity: 341
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 147, 74

Conread position: 1-514
Cow position:
Alignm length: 523
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 109

Conread position: 1-515
Cow position:
Alignm length: 538
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 30

Conread position: 1-522
Cow position:
Alignm length: 539
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 205

Conread position: 1-522
Cow position:
Alignm length: 543
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 264

Conread position: 1-523
Cow position:
Alignm length: 546
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 286

Conread position: 1-523
Cow position:
Alignm length: 544
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-525
Cow position:
Alignm length: 538
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 175

Conread position: 1-525
Cow position:
Alignm length: 547
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 75

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-525
Cow position:
Alignm length: 544
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 285

Conread position: 1-525
Cow position:
Alignm length: 549
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 182

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-525
Cow position:
Alignm length: 550
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 218

Conread position: 1-525
Cow position:
Alignm length: 544
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 281

Conread position: 1-525
Cow position:
Alignm length: 543
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 276

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 81

Conread position: 1-525
Cow position:
Alignm length: 543
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 176

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 219

Conread position: 1-530
Cow position:
Alignm length: 558
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 43

Conread position: 1-536
Cow position:
Alignm length: 548
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 191

Conread position: 1-537
Cow position:
Alignm length: 544
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 70

Conread position: 2-525
Cow position:
Alignm length: 544
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 282

Conread position: 5-525
Cow position:
Alignm length: 532
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 119

Conread position: 5-525
Cow position:
Alignm length: 542
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 280

Conread position: 6-348
Cow position:
Alignm length: 374
Alignm identity: 269
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 97, 65

Conread position: 6-350
Cow position:
Alignm length: 367
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 46

Conread position: 6-357
Cow position:
Alignm length: 378
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 288

Conread position: 6-371
Cow position:
Alignm length: 379
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 38

Conread position: 6-404
Cow position:
Alignm length: 411
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 157

Conread position: 6-422
Cow position:
Alignm length: 434
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 43

Conread position: 6-425
Cow position:
Alignm length: 435
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 187

Conread position: 6-522
Cow position:
Alignm length: 530
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 38

Conread position: 6-523
Cow position:
Alignm length: 539
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 279

Conread position: 6-523
Cow position:
Alignm length: 536
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 277

Conread position: 6-524
Cow position:
Alignm length: 540
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 544
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 67

Conread position: 6-525
Cow position:
Alignm length: 534
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 19

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 279

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 279

Conread position: 6-525
Cow position:
Alignm length: 538
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 19

Conread position: 6-525
Cow position:
Alignm length: 542
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 43

Conread position: 6-525
Cow position:
Alignm length: 540
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 280

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 543
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 281

Conread position: 6-525
Cow position:
Alignm length: 537
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 275

Conread position: 6-530
Cow position:
Alignm length: 544
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 277

Conread position: 7-218
Cow position:
Alignm length: 220
Alignm identity: 157
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 23, 110

Conread position: 7-362
Cow position:
Alignm length: 380
Alignm identity: 254
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 58, 178

Conread position: 7-523
Cow position:
Alignm length: 537
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 149

Conread position: 7-525
Cow position:
Alignm length: 535
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 31

Conread position: 7-529
Cow position:
Alignm length: 549
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 76

Conread position: 7-530
Cow position:
Alignm length: 535
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 144

Conread position: 8-383
Cow position:
Alignm length: 379
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 40

Conread position: 8-525
Cow position:
Alignm length: 539
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 277

Conread position: 13-525
Cow position:
Alignm length: 534
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 272

Conread position: 13-530
Cow position:
Alignm length: 534
Alignm identity: 351
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 57, 82

Conread position: 14-525
Cow position:
Alignm length: 533
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 272

Conread position: 15-293
Cow position:
Alignm length: 286
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 79

Conread position: 17-525
Cow position:
Alignm length: 528
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 53

Conread position: 21-372
Cow position:
Alignm length: 365
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 138

Conread position: 32-535
Cow position:
Alignm length: 521
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 74

Conread position: 33-425
Cow position:
Alignm length: 405
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 149

Conread position: 34-430
Cow position:
Alignm length: 404
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 34-506
Cow position:
Alignm length: 489
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 37

Conread position: 41-525
Cow position:
Alignm length: 508
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 246

Conread position: 45-481
Cow position:
Alignm length: 455
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 27

Conread position: 47-523
Cow position:
Alignm length: 487
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 147

Conread position: 61-525
Cow position:
Alignm length: 491
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 124

Conread position: 65-522
Cow position:
Alignm length: 481
Alignm identity: 315
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 86, 40

Conread position: 87-525
Cow position:
Alignm length: 449
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 187

Conread position: 89-522
Cow position:
Alignm length: 438
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 336, 32

Conread position: 95-525
Cow position:
Alignm length: 447
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 79

Conread position: 96-397
Cow position:
Alignm length: 307
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 59

Conread position: 96-403
Cow position:
Alignm length: 318
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 77

Conread position: 104-523
Cow position:
Alignm length: 431
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 171

Conread position: 119-517
Cow position:
Alignm length: 409
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 154

Conread position: 120-525
Cow position:
Alignm length: 416
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 49

Conread position: 120-525
Cow position:
Alignm length: 416
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 49

Conread position: 122-525
Cow position:
Alignm length: 415
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 125

Conread position: 122-544
Cow position:
Alignm length: 433
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 150

Conread position: 152-332
Cow position:
Alignm length: 181
Alignm identity: 151
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 152-423
Cow position:
Alignm length: 272
Alignm identity: 203
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 11, 0

Conread position: 152-525
Cow position:
Alignm length: 379
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 11

Conread position: 163-496
Cow position:
Alignm length: 338
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 105

Conread position: 163-525
Cow position:
Alignm length: 367
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 105

Conread position: 176-413
Cow position:
Alignm length: 240
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 94

Conread position: 183-523
Cow position:
Alignm length: 347
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 85

Conread position: 198-534
Cow position:
Alignm length: 341
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 27

Conread position: 203-391
Cow position:
Alignm length: 190
Alignm identity: 157
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 99, 65

Conread position: 210-349
Cow position:
Alignm length: 141
Alignm identity: 115
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 43, 10

Conread position: 217-368
Cow position:
Alignm length: 152
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 227-507
Cow position:
Alignm length: 286
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 29

Conread position: 232-525
Cow position:
Alignm length: 300
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 36

Conread position: 233-525
Cow position:
Alignm length: 297
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 35

Conread position: 247-428
Cow position:
Alignm length: 183
Alignm identity: 139
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 161, 21

Conread position: 264-498
Cow position:
Alignm length: 239
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 77

Conread position: 281-405
Cow position:
Alignm length: 125
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 74, 0

Conread position: 292-525
Cow position:
Alignm length: 239
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 80

Show alignments to all cow chromosomes.