Cow genome map

Conread name: rcki31_m16.y1

Conread position: 1-153
Cow position:
Alignm length: 165
Alignm identity: 123
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 76, 0

Conread position: 1-179
Cow position:
Alignm length: 189
Alignm identity: 137
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 66, 17

Conread position: 1-213
Cow position:
Alignm length: 226
Alignm identity: 163
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 74, 51

Conread position: 1-266
Cow position:
Alignm length: 278
Alignm identity: 201
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 74, 161

Conread position: 1-355
Cow position:
Alignm length: 372
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 205

Conread position: 1-425
Cow position:
Alignm length: 438
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 25

Conread position: 1-426
Cow position:
Alignm length: 443
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-465
Cow position:
Alignm length: 502
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 189

Conread position: 1-469
Cow position:
Alignm length: 489
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 48

Conread position: 1-478
Cow position:
Alignm length: 502
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 48

Conread position: 1-478
Cow position:
Alignm length: 499
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-498
Cow position:
Alignm length: 519
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 299

Conread position: 1-514
Cow position:
Alignm length: 535
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 259

Conread position: 1-516
Cow position:
Alignm length: 537
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-523
Cow position:
Alignm length: 542
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 25

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-525
Cow position:
Alignm length: 543
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 96

Conread position: 1-525
Cow position:
Alignm length: 559
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 257

Conread position: 1-525
Cow position:
Alignm length: 558
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 216

Conread position: 1-525
Cow position:
Alignm length: 544
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 176

Conread position: 1-525
Cow position:
Alignm length: 550
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 296

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 221

Conread position: 1-525
Cow position:
Alignm length: 552
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 252

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 285

Conread position: 1-525
Cow position:
Alignm length: 548
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 293

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-530
Cow position:
Alignm length: 549
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 48

Conread position: 5-514
Cow position:
Alignm length: 547
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 216

Conread position: 5-525
Cow position:
Alignm length: 558
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 46

Conread position: 6-384
Cow position:
Alignm length: 398
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 175

Conread position: 6-384
Cow position:
Alignm length: 393
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 276

Conread position: 6-386
Cow position:
Alignm length: 394
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 38

Conread position: 6-423
Cow position:
Alignm length: 436
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 279

Conread position: 6-425
Cow position:
Alignm length: 436
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 43

Conread position: 6-450
Cow position:
Alignm length: 460
Alignm identity: 303
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 68, 32

Conread position: 6-518
Cow position:
Alignm length: 527
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 25

Conread position: 6-523
Cow position:
Alignm length: 542
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 63

Conread position: 6-525
Cow position:
Alignm length: 542
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 214

Conread position: 6-525
Cow position:
Alignm length: 537
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 275

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 279

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 174

Conread position: 6-525
Cow position:
Alignm length: 543
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 279

Conread position: 6-525
Cow position:
Alignm length: 543
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 9

Conread position: 6-525
Cow position:
Alignm length: 538
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 5

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 548
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 283

Conread position: 6-525
Cow position:
Alignm length: 544
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 231

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 13

Conread position: 6-525
Cow position:
Alignm length: 542
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 43

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 36

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 200

Conread position: 6-525
Cow position:
Alignm length: 538
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 276

Conread position: 6-525
Cow position:
Alignm length: 536
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 219

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 279

Conread position: 6-525
Cow position:
Alignm length: 540
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 19

Conread position: 6-525
Cow position:
Alignm length: 538
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 278

Conread position: 6-525
Cow position:
Alignm length: 540
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 211

Conread position: 6-549
Cow position:
Alignm length: 561
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 20

Conread position: 7-260
Cow position:
Alignm length: 270
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 7-358
Cow position:
Alignm length: 365
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 97

Conread position: 7-489
Cow position:
Alignm length: 504
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 45

Conread position: 7-500
Cow position:
Alignm length: 501
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 45

Conread position: 7-525
Cow position:
Alignm length: 552
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 219

Conread position: 7-525
Cow position:
Alignm length: 536
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 224

Conread position: 7-525
Cow position:
Alignm length: 542
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 279

Conread position: 7-525
Cow position:
Alignm length: 542
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 280

Conread position: 10-420
Cow position:
Alignm length: 422
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 77

Conread position: 11-461
Cow position:
Alignm length: 468
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 33

Conread position: 12-525
Cow position:
Alignm length: 538
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 273

Conread position: 13-424
Cow position:
Alignm length: 430
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 36

Conread position: 13-506
Cow position:
Alignm length: 510
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 146

Conread position: 13-524
Cow position:
Alignm length: 527
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 165

Conread position: 15-525
Cow position:
Alignm length: 556
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 390

Conread position: 15-525
Cow position:
Alignm length: 537
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 267

Conread position: 16-523
Cow position:
Alignm length: 534
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 56

Conread position: 42-525
Cow position:
Alignm length: 505
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 243

Conread position: 46-525
Cow position:
Alignm length: 503
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 136

Conread position: 47-365
Cow position:
Alignm length: 326
Alignm identity: 217
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 28, 106

Conread position: 61-516
Cow position:
Alignm length: 475
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 196

Conread position: 71-525
Cow position:
Alignm length: 470
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 109

Conread position: 76-356
Cow position:
Alignm length: 296
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 207

Conread position: 77-353
Cow position:
Alignm length: 287
Alignm identity: 201
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 16, 161

Conread position: 82-525
Cow position:
Alignm length: 451
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 88

Conread position: 87-412
Cow position:
Alignm length: 335
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 155

Conread position: 91-423
Cow position:
Alignm length: 343
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 151

Conread position: 92-516
Cow position:
Alignm length: 435
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 182

Conread position: 95-366
Cow position:
Alignm length: 283
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 79

Conread position: 95-524
Cow position:
Alignm length: 440
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 111

Conread position: 116-525
Cow position:
Alignm length: 414
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 309, 146

Conread position: 119-404
Cow position:
Alignm length: 293
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 20

Conread position: 120-352
Cow position:
Alignm length: 240
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 49

Conread position: 120-525
Cow position:
Alignm length: 417
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 49

Conread position: 120-525
Cow position:
Alignm length: 415
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 153

Conread position: 120-529
Cow position:
Alignm length: 430
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 157

Conread position: 122-508
Cow position:
Alignm length: 396
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 253

Conread position: 122-525
Cow position:
Alignm length: 416
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 47

Conread position: 152-492
Cow position:
Alignm length: 345
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 116

Conread position: 152-525
Cow position:
Alignm length: 377
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 152-525
Cow position:
Alignm length: 381
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 11

Conread position: 152-525
Cow position:
Alignm length: 381
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 11

Conread position: 152-525
Cow position:
Alignm length: 381
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 11

Conread position: 152-525
Cow position:
Alignm length: 380
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 11

Conread position: 153-420
Cow position:
Alignm length: 268
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 160-371
Cow position:
Alignm length: 212
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 0

Conread position: 163-513
Cow position:
Alignm length: 351
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 163-523
Cow position:
Alignm length: 365
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 105

Conread position: 163-525
Cow position:
Alignm length: 363
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 0

Conread position: 163-537
Cow position:
Alignm length: 385
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 165

Conread position: 174-342
Cow position:
Alignm length: 169
Alignm identity: 130
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 94, 0

Conread position: 175-525
Cow position:
Alignm length: 357
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 39

Conread position: 180-525
Cow position:
Alignm length: 350
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 50

Conread position: 181-525
Cow position:
Alignm length: 350
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 6

Conread position: 186-449
Cow position:
Alignm length: 269
Alignm identity: 182
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 98, 47

Conread position: 187-525
Cow position:
Alignm length: 344
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 118

Conread position: 188-526
Cow position:
Alignm length: 340
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 80

Conread position: 189-358
Cow position:
Alignm length: 172
Alignm identity: 129
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 19, 81

Conread position: 205-343
Cow position:
Alignm length: 139
Alignm identity: 108
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 63, 0

Conread position: 215-467
Cow position:
Alignm length: 257
Alignm identity: 183
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 212, 41

Conread position: 225-525
Cow position:
Alignm length: 305
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 43

Conread position: 225-550
Cow position:
Alignm length: 330
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 36

Conread position: 232-525
Cow position:
Alignm length: 299
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 36

Conread position: 244-525
Cow position:
Alignm length: 286
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 24

Conread position: 251-514
Cow position:
Alignm length: 269
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 17

Conread position: 252-393
Cow position:
Alignm length: 144
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 123

Conread position: 276-463
Cow position:
Alignm length: 192
Alignm identity: 148
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 149, 97

Conread position: 282-525
Cow position:
Alignm length: 249
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 91

Conread position: 282-525
Cow position:
Alignm length: 248
Alignm identity: 186
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 143, 94

Conread position: 303-525
Cow position:
Alignm length: 235
Alignm identity: 185
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 123, 58

Show alignments to all cow chromosomes.